Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

17959316 .. 17959813

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAAGCAACTTGTCTACGTTCCTCCTCACTTGTTCCCTTGCCATTTTTGCCTGCAGGCAAATCTCAGTGCACAAGAACTGGATTACTGCACAGGAGAACAATGCCAAGGAGATCATCAAGTGCAAGTACCGGCACTACCGGGCTTGTCGTTGTAGCAGCTGCGAGGGACAACCGCGAAGGGCCATCGCGATCCGTGGTCGATGAGAGCTTGATCGTTCTGAGAAAACGCATTCACGAGATGAAAATGGTGGAGAGGAACTACGAGCCTCCTCAGGAATGGATGCTTTGGGAGAAGCAGTGTTACGCAAGTTATGATGACCATGTTTGTAACATGGTGGGTTGTCTTCAATCGTGTCTCATGAACACCAGGCCTAGTGTAGCCCTTTCTGTGCTACTTCTCTTCGCCGTCAGCGTCCCGGCATCGACGGCCATGATTTTGCTACGGTTCATGGAGGTGGCTAATGGGGTTCTATCTACCGTTCATCATTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.3

Weight (kDa)

9.07

Isoelectric Point (pI)

72.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	2 cut(s)	177, 190
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	429
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	161, 210
AluI	AGCT	2 cut(s)	161, 210
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	362
Alw44I	GTGCAC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	3 cut(s)	182, 371, 429
ApaLI	GTGCAC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	158, 161
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	2 cut(s)	142, 419
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	148, 170
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	392, 444
BciT130I	CCWGG	1 cut(s)	370
BcnI	CCSGG	2 cut(s)	142, 419
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme1390I	CCNGG	3 cut(s)	142, 370, 419
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	3 cut(s)	142, 370, 419
BmsI	GCATC	2 cut(s)	273, 431
BpiI	GAAGAC	1 cut(s)	338
BpuMI	CCSGG	2 cut(s)	142, 419
BsaJI	CCNNGG	2 cut(s)	107, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	107, 195
BseGI	GGATG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	80, 212, 287
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	16, 261
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	148, 170
BsgI	GTGCAG	1 cut(s)	74
Bsh1236I	CGCG	2 cut(s)	177, 190
BshFI	GGCC	3 cut(s)	184, 373, 431
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	132, 141, 419
BslFI	GGGAC	2 cut(s)	182, 401
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	182, 401
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	184, 373, 431
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	113, 191, 213
Bsp68I	TCGCGA	1 cut(s)	190
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	3 cut(s)	184, 373, 431
BspCNI	CTCAG	3 cut(s)	79, 213, 286
BspFNI	CGCG	2 cut(s)	177, 190
BspHI	TCATGA	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	107, 195
BssMI	GATC	3 cut(s)	113, 191, 213
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	107
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	447, 481
Bst6I	CTCTTC	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	54, 58
BstDEI	CTNAG	3 cut(s)	66, 221, 273
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	2 cut(s)	177, 190
BstKTI	GATC	3 cut(s)	116, 194, 216
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	3 cut(s)	113, 191, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 428
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	3 cut(s)	140, 368, 417
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	74
BstUI	CGCG	2 cut(s)	177, 190
BstV1I	GCAGC	2 cut(s)	148, 170
BstV2I	GAAGAC	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	184, 373, 431
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	288
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	74, 305
BtuMI	TCGCGA	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	54, 58
CciI	TCATGA	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	5 cut(s)	323, 334, 361, 433, 451
CviJI	RGCY	9 cut(s)	145, 161, 184, 210, 268, 373, 383, 431, 461
CviKI_1	RGCY	9 cut(s)	145, 161, 184, 210, 268, 373, 383, 431, 461
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	66, 221, 273
DpnI	GATC	3 cut(s)	115, 193, 215
DpnII	GATC	3 cut(s)	113, 191, 213
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	5 cut(s)	326, 337, 364, 436, 454
FaiI	YATR	6 cut(s)	315, 324, 335, 362, 434, 452
FaqI	GGGAC	2 cut(s)	182, 401
FatI	CATG	5 cut(s)	322, 333, 360, 432, 450
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	159, 162
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	159, 162
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	2 cut(s)	159, 162
HaeIII	GGCC	3 cut(s)	184, 373, 431
HapII	CCGG	3 cut(s)	132, 141, 419
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	5 cut(s)	326, 337, 364, 436, 454
HpaII	CCGG	3 cut(s)	132, 141, 419
Hpy166II	GTNNAC	2 cut(s)	17, 72
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	4 cut(s)	189, 236, 275, 361
Hpy8I	GTNNAC	2 cut(s)	17, 72
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	447, 481
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	56, 72, 91, 125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 428
HpyF3I	CTNAG	3 cut(s)	66, 221, 273
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	5 cut(s)	326, 337, 364, 436, 454
Kzo9I	GATC	3 cut(s)	113, 191, 213
Lsp1109I	GCAGC	2 cut(s)	148, 170
LweI	GCATC	2 cut(s)	273, 431
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	302, 329
MalI	GATC	3 cut(s)	115, 193, 215
MboI	GATC	3 cut(s)	113, 191, 213
MboII	GAAGA	2 cut(s)	338, 394
MhlI	GDGCHC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	34, 37, 159, 249, 279, 282, 448
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	132, 141, 419
MspR9I	CCNGG	3 cut(s)	142, 370, 419
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	2 cut(s)	177, 190
MwoI	GCNNNNNNNGC	2 cut(s)	49, 428
NciI	CCSGG	2 cut(s)	142, 419
NdeII	GATC	3 cut(s)	113, 191, 213
NlaIII	CATG	5 cut(s)	326, 337, 364, 436, 454
NruI	TCGCGA	1 cut(s)	190
PagI	TCATGA	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	160, 163
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	161
RruI	TCGCGA	1 cut(s)	190
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	455
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	3 cut(s)	113, 191, 213
Sau96I	GGNCC	1 cut(s)	182
SbfI	CCTGCAGG	1 cut(s)	58
ScrFI	CCNGG	3 cut(s)	142, 370, 419
SdaI	CCTGCAGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	4 cut(s)	22, 163, 212, 459
SfaNI	GCATC	2 cut(s)	273, 431
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	455
Sse8387I	CCTGCAGG	1 cut(s)	58
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	140, 368, 417
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	447, 481
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	201, 425
TscAI	CASTG	2 cut(s)	74, 305
TseI	GCWGC	2 cut(s)	158, 161
TspDTI	ATGAA	4 cut(s)	257, 377, 439, 473
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	74, 305
VneI	GTGCAC	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.