Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

30947989 .. 30949103

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCATCAACTTCTGCACTACTCCTCTCTTCTTCTTCTTCTTCCCCCGTCTTCAACCCGTTTTCGAGTTCTTCATCAAAAGCAGGAACCCTAATTCGACCGAGGTCTAGAATTGTTGCATCGAGTAGAAAAGAAGCGCACGATCACCACCAGAACTACAGCAGCAGGCTGGTGGATGAGAACATGATCGTTCTGAGAAAGAGAATCCACGAGATGAAGATGGTGGAGAGGAACTACGAGCCTCCGGCGGAGTGGATGGACTGGGAGAAGAGGTACTACACCAGCTACGACTCGATCATATGCCAAGCCATGGGTCTGTTGCAGTCGCAGTTAATGAACACCAGGCCGAGCTTGGCTCTCGCATTCATGGCTTTGATCGTTTTTAGTGTTCCGGCCTCGACGTTCATGGTGTTCTCCCATTTGCTGGAGATCACGAAAGGGGCCTTGACCGGTGGTTTTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

9.41

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	310, 424
AciI	CCGC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	310, 424
AgeI	ACCGGT	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	285, 351
AluI	AGCT	2 cut(s)	285, 351
AoxI	GGCC	3 cut(s)	344, 393, 441
ApeKI	GCWGC	1 cut(s)	162
AsiGI	ACCGGT	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	2 cut(s)	214, 250
BciT130I	CCWGG	1 cut(s)	343
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	88, 442
BmrFI	CCNGG	1 cut(s)	343
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	2 cut(s)	14, 128
BmuI	ACTGGG	1 cut(s)	271
BoxI	GACNNNNGTC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	101, 309
BsaWI	WCCGGW	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 424
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	101, 309
BseGI	GGATG	2 cut(s)	181, 261
BseLI	CCNNNNNNNGG	2 cut(s)	310, 424
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	3 cut(s)	346, 395, 443
BshTI	ACCGGT	1 cut(s)	449
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	245, 392, 450
BslI	CCNNNNNNNGG	2 cut(s)	310, 424
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	3 cut(s)	346, 395, 443
Bsp143I	GATC	5 cut(s)	142, 186, 294, 375, 429
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	346, 395, 443
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	88, 442
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	101, 309
BssMI	GATC	5 cut(s)	142, 186, 294, 375, 429
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	343
Bst6I	CTCTTC	2 cut(s)	34, 263
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	181, 261
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	5 cut(s)	145, 189, 297, 378, 432
BstMBI	GATC	5 cut(s)	142, 186, 294, 375, 429
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	343
BstPAI	GACNNNNGTC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	346, 395, 443
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	181, 261
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	274
CspAI	ACCGGT	1 cut(s)	449
CviAII	CATG	4 cut(s)	184, 310, 367, 406
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	5 cut(s)	144, 188, 296, 377, 431
DpnII	GATC	5 cut(s)	142, 186, 294, 375, 429
Eam1104I	CTCTTC	2 cut(s)	34, 263
EarI	CTCTTC	2 cut(s)	34, 263
EciI	GGCGGA	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	4 cut(s)	187, 313, 370, 409
FaiI	YATR	7 cut(s)	185, 299, 301, 311, 368, 407, 466
FatI	CATG	4 cut(s)	183, 309, 366, 405
FauNDI	CATATG	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	2 cut(s)	188, 268
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	3 cut(s)	346, 395, 443
HapII	CCGG	3 cut(s)	245, 392, 450
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	187, 313, 370, 409
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	2 cut(s)	204, 290
HpaII	CCGG	3 cut(s)	245, 392, 450
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	108, 433
Hpy99I	CGWCG	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	17, 119, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	4 cut(s)	187, 313, 370, 409
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	5 cut(s)	142, 186, 294, 375, 429
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	2 cut(s)	14, 128
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	401
MalI	GATC	5 cut(s)	144, 188, 296, 377, 431
MboI	GATC	5 cut(s)	142, 186, 294, 375, 429
MboII	GAAGA	9 cut(s)	21, 24, 27, 30, 33, 43, 63, 229, 280
MluCI	AATT	2 cut(s)	93, 111
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	6 cut(s)	35, 96, 222, 252, 264, 406
MseI	TTAA	1 cut(s)	332
MspI	CCGG	3 cut(s)	245, 392, 450
MspR9I	CCNGG	1 cut(s)	343
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	5 cut(s)	142, 186, 294, 375, 429
NlaIII	CATG	4 cut(s)	187, 313, 370, 409
NlaIV	GGNNCC	2 cut(s)	88, 442
NmeAIII	GCCGAG	1 cut(s)	372
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	204
PflMI	CCANNNNNTGG	2 cut(s)	310, 424
PinAI	ACCGGT	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PshAI	GACNNNNGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	88, 442
PspPI	GGNCC	1 cut(s)	441
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	5 cut(s)	142, 186, 294, 375, 429
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	343
SetI	ASST	5 cut(s)	107, 275, 287, 353, 404
SfaNI	GCATC	2 cut(s)	14, 128
SfcI	CTRYAG	1 cut(s)	157
Sse9I	AATT	2 cut(s)	93, 111
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	5 cut(s)	65, 97, 122, 293, 398
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	93, 111
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	5 cut(s)	63, 230, 350, 355, 394
Van91I	CCANNNNNTGG	2 cut(s)	310, 424
XbaI	TCTAGA	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.