Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

30831798 .. 30833355

Gene Structure 1558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G322400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCATCAACTTCACTCCTTTCTTCTTCTTCTTCTTCCATTGTCTCGTTTAACCCATTTTCAGGCATAGATCGACATCAAAAGCGAGCTGCACGGTCTGCTACAAGGGTATTTGCGTCAAGCAGAAAAGAAGCGGATCATGAGCGGTACCGGCAAAACTTCTATAGGAGCAGGCTGGTGGATGAGAACATGATTGTTCTGAGGAAAAGGGTTCATGAGATGAAGATGGTGGAGAGGAACTACGAGCCTCCCTCTGACTGGCTCGACTGGGAGAAGCGCTATTACACCACCTACGATTCTTCTATATGCCAACTCATGGGTCTCTTGCAGTCTCAGTTGATGAACACCAGACCAAGCTTCGCTTTGGCAACCATGGCTTTGATCATCTTGAGCCTGCCCACCTCAACACTTTTGCTTTTCTTCCATTTACTTGATCTCACAAAGGGGGTCCTAACTCTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.85

Weight (kDa)

9.71

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	2 cut(s)	134, 145
AclWI	GGATC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	149
AfeI	AGCGCT	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	62, 258, 316
AluBI	AGCT	2 cut(s)	89, 357
AluI	AGCT	2 cut(s)	89, 357
Alw26I	GTCTC	3 cut(s)	49, 326, 336
AlwI	GGATC	1 cut(s)	144
Aor51HI	AGCGCT	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	147
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	220
BclI	TGATCA	1 cut(s)	381
BcoDI	GTCTC	3 cut(s)	49, 326, 336
BfaI	CTAG	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	280
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	149, 449
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpuEI	CTTGAG	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 258, 316
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	263, 272
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	62, 258, 316
BseMII	CTCAG	2 cut(s)	191, 347
BseNI	ACTGG	2 cut(s)	263, 272
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	62, 258, 316
BsmAI	GTCTC	3 cut(s)	49, 326, 336
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	4 cut(s)	70, 136, 381, 433
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	2 cut(s)	134, 145
BspCNI	CTCAG	2 cut(s)	192, 346
BspHI	TCATGA	2 cut(s)	139, 214
BspLI	GGNNCC	2 cut(s)	149, 449
BspPI	GGATC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	263, 272
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	4 cut(s)	70, 136, 381, 433
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	87, 173, 395
BstDEI	CTNAG	2 cut(s)	200, 333
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	73, 139, 384, 436
BstMAI	GTCTC	3 cut(s)	49, 326, 336
BstMBI	GATC	4 cut(s)	70, 136, 381, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 151, 374
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	87, 173, 395
CciI	TCATGA	2 cut(s)	139, 214
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	5 cut(s)	140, 190, 215, 316, 373
CviJI	RGCY	7 cut(s)	89, 175, 247, 262, 357, 377, 393
CviKI_1	RGCY	7 cut(s)	89, 175, 247, 262, 357, 377, 393
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	200, 333
DpnI	GATC	4 cut(s)	72, 138, 383, 435
DpnII	GATC	4 cut(s)	70, 136, 381, 433
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	448
Eco47III	AGCGCT	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	5 cut(s)	143, 193, 218, 319, 376
FaiI	YATR	9 cut(s)	68, 141, 165, 191, 216, 305, 307, 317, 374
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FatI	CATG	5 cut(s)	139, 189, 214, 315, 372
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	463
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	280
HapII	CCGG	1 cut(s)	151
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	143, 193, 218, 319, 376
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	201, 256
Hpy188III	TCNNGA	3 cut(s)	140, 215, 388
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	92, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 151, 374
HpyF3I	CTNAG	2 cut(s)	200, 333
Hsp92II	CATG	5 cut(s)	143, 193, 218, 319, 376
HspAI	GCGC	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	70, 136, 381, 433
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	8 cut(s)	48, 157, 161, 164, 244, 253, 361, 407
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	463
MalI	GATC	4 cut(s)	72, 138, 383, 435
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	4 cut(s)	70, 136, 381, 433
MboII	GAAGA	8 cut(s)	15, 18, 21, 24, 27, 235, 291, 412
MnlI	CCTC	5 cut(s)	195, 228, 258, 262, 412
MseI	TTAA	2 cut(s)	51, 459
MspI	CCGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	98, 151, 374
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	4 cut(s)	70, 136, 381, 433
NlaIII	CATG	5 cut(s)	143, 193, 218, 319, 376
NlaIV	GGNNCC	2 cut(s)	149, 449
PagI	TCATGA	2 cut(s)	139, 214
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	149, 449
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	51, 459
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	70, 136, 381, 433
Sau96I	GGNCC	1 cut(s)	448
SetI	ASST	4 cut(s)	91, 293, 359, 404
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SsiI	CCGC	2 cut(s)	134, 145
SspMI	CTAG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	73, 264
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	51, 459
Tru9I	TTAA	2 cut(s)	51, 459
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	203, 236, 356
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	448
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.