Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005054.1

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Forward (+)

6173 .. 6655

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005054.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggcatcaacttcttcactgcttctctcttcttcttcttcttcttcttcctcctccattttcaacccgttttcgacttcttcaccgaaagcgggaagcgtaattcgacaacaacggaggtccagaattgttgcatcgagtagaaaagaagcgcatgatcaccaccagaactacagcagcaggctcgtggatgagaacatgatcgttttgaggaagaaaatccacgagatgaagatggtagagaggaactacgaacctccggcggagtggatggactgggagaagaggtactacaccagctacgactcgttcatatgccaagtcatgggtttgttgcagtcgcagttgatgaacaccaggccgagcttggctctcgcattcatggctttgatccttttgagcgtcccggcctcgacgttcatggtgttctcccatttgctggagatcacaaaaggagcattgaccagtggttttggtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.0

Weight (kDa)

9.56

Isoelectric Point (pI)

64.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	325, 439
AciI	CCGC	2 cut(s)	92, 263
AclWI	GGATC	1 cut(s)	385
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	92, 325, 439
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	300, 366
AluI	AGCT	2 cut(s)	300, 366
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	359, 408
ApeKI	GCWGC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	75, 152
AvaII	GGWCC	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BauI	CACGAG	2 cut(s)	185, 224
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	229, 265
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	358
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	358, 407
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	358, 407
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	2 cut(s)	14, 143
BmuI	ACTGGG	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 325, 439
Bse1I	ACTGG	2 cut(s)	281, 465
BseBI	CCWGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	196, 276
BseLI	CCNNNNNNNGG	3 cut(s)	92, 325, 439
BseNI	ACTGG	2 cut(s)	281, 465
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	2 cut(s)	361, 410
BsiSI	CCGG	2 cut(s)	260, 407
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	92, 325, 439
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	361, 410
Bsp143I	GATC	4 cut(s)	157, 201, 390, 444
BspACI	CCGC	2 cut(s)	92, 263
BspANI	GGCC	2 cut(s)	361, 410
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	281, 465
BssMI	GATC	4 cut(s)	157, 201, 390, 444
BssSI	CACGAG	2 cut(s)	185, 224
Bst2BI	CACGAG	2 cut(s)	185, 224
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	34, 278
BstC8I	GCNNGC	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	196, 276
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	160, 204, 393, 447
BstMBI	GATC	4 cut(s)	157, 201, 390, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	356, 405
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	361, 410
BtsCI	GGATG	2 cut(s)	196, 276
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	17, 472
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	5 cut(s)	155, 199, 325, 382, 421
CviJI	RGCY	7 cut(s)	184, 300, 361, 366, 371, 386, 410
CviKI_1	RGCY	7 cut(s)	184, 300, 361, 366, 371, 386, 410
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	4 cut(s)	159, 203, 392, 446
DpnII	GATC	4 cut(s)	157, 201, 390, 444
Eam1104I	CTCTTC	2 cut(s)	34, 278
EarI	CTCTTC	2 cut(s)	34, 278
EciI	GGCGGA	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	5 cut(s)	158, 202, 328, 385, 424
FaiI	YATR	8 cut(s)	156, 200, 314, 316, 326, 383, 422, 481
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	5 cut(s)	154, 198, 324, 381, 420
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	2 cut(s)	203, 283
Fsp4HI	GCNGC	1 cut(s)	178
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	361, 410
HapII	CCGG	2 cut(s)	260, 407
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	158, 202, 328, 385, 424
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	2 cut(s)	260, 407
HphI	GGTGA	2 cut(s)	75, 152
Hpy188III	TCNNGA	1 cut(s)	123
Hpy99I	CGWCG	1 cut(s)	418
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	2 cut(s)	134, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	5 cut(s)	158, 202, 328, 385, 424
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	157, 201, 390, 444
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	14, 143
MaeII	ACGT	1 cut(s)	416
MalI	GATC	4 cut(s)	159, 203, 392, 446
MboI	GATC	4 cut(s)	157, 201, 390, 444
MluCI	AATT	2 cut(s)	102, 126
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	61, 64, 111, 204, 237, 267, 279, 421
MspI	CCGG	2 cut(s)	260, 407
MspR9I	CCNGG	2 cut(s)	358, 407
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	407
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	4 cut(s)	157, 201, 390, 444
NlaIII	CATG	5 cut(s)	158, 202, 328, 385, 424
NmeAIII	GCCGAG	1 cut(s)	387
PctI	GAATGC	1 cut(s)	377
PflMI	CCANNNNNTGG	2 cut(s)	325, 439
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	120
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	4 cut(s)	157, 201, 390, 444
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	358, 407
SetI	ASST	6 cut(s)	122, 259, 290, 302, 368, 419
SfaNI	GCATC	2 cut(s)	14, 143
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	2 cut(s)	102, 126
SsiI	CCGC	2 cut(s)	92, 263
StyD4I	CCNGG	2 cut(s)	356, 405
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	4 cut(s)	74, 106, 137, 413
TasI	AATT	2 cut(s)	102, 126
TscAI	CASTG	2 cut(s)	24, 472
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	5 cut(s)	245, 301, 365, 370, 409
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	24, 472
Van91I	CCANNNNNTGG	2 cut(s)	325, 439
VpaK11BI	GGWCC	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.