Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

61648356 .. 61649257

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCGTCAACTTCTTCACTGCTCCTCTCTTCTTCTTCTTCTTCCTCCTCCTTTTTCAACCCGTTTTCGACCTCTTCACCGAAAGCGGGAACCGTAATTCGACAACAACGGAGGTCTAGAATTGTTGCATCGAGTAGAAAAGAAGCGCACGATCACCACCAGAACTACAGCAGCAGGCTCGTGGATGAGAACATGATCGTTTTGAGGAAGAAAATCCACGAGATGAAGATGGTGGAGAGGAACTACGAGCCTCCGGCGGAGTGGATGGACTGGGAGAAGAGGTACTACACCAGCTACGACTCGTTCATATGCCAAGTCATGGGTTTGTTGCAGTCGCAGTTGATGAACACCAGGCCGAGCTTGGATTCCATTGAACTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.69

Weight (kDa)

9.16

Isoelectric Point (pI)

73.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	2 cut(s)	86, 257
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	86, 319
AgsI	TTSAA	2 cut(s)	58, 374
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	294, 360
AluI	AGCT	2 cut(s)	294, 360
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	69, 146
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BauI	CACGAG	2 cut(s)	179, 218
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	223, 259
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	352
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	352
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 319
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	190, 270
BseLI	CCNNNNNNNGG	2 cut(s)	86, 319
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	2 cut(s)	14, 37
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	86, 319
BsnI	GGCC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	151, 195
BspACI	CCGC	2 cut(s)	86, 257
BspANI	GGCC	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	151, 195
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	2 cut(s)	179, 218
Bst2BI	CACGAG	2 cut(s)	179, 218
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	3 cut(s)	34, 79, 272
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	190, 270
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	154, 198
BstMBI	GATC	2 cut(s)	151, 195
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	190, 270
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	380
CfoI	GCGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	193, 319, 381
CviJI	RGCY	5 cut(s)	178, 250, 294, 355, 360
CviKI_1	RGCY	5 cut(s)	178, 250, 294, 355, 360
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	2 cut(s)	153, 197
DpnII	GATC	2 cut(s)	151, 195
Eam1104I	CTCTTC	3 cut(s)	34, 79, 272
EarI	CTCTTC	3 cut(s)	34, 79, 272
EciI	GGCGGA	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	350
FaeI	CATG	3 cut(s)	196, 322, 384
FaiI	YATR	5 cut(s)	194, 308, 310, 320, 382
FatI	CATG	3 cut(s)	192, 318, 380
FauI	CCCGC	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	2 cut(s)	197, 277
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	196, 322, 384
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	299, 365
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	69, 146
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	117, 381
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	128, 331
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	196, 322, 384
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	151, 195
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	7 cut(s)	160, 173, 256, 267, 304, 337, 364
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	117
MalI	GATC	2 cut(s)	153, 197
MboI	GATC	2 cut(s)	151, 195
MluCI	AATT	2 cut(s)	96, 120
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	35, 55, 58, 82, 105, 198, 231, 261, 273
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	151, 195
NlaIII	CATG	3 cut(s)	196, 322, 384
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	2 cut(s)	151, 195
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	5 cut(s)	74, 116, 284, 296, 362
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	96, 120
SsiI	CCGC	2 cut(s)	86, 257
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	3 cut(s)	68, 100, 131
TasI	AATT	2 cut(s)	96, 120
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	4 cut(s)	239, 295, 359, 369
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.