Prupe.3G151400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0009102
Physical Location & Seq
Reverse (-)
16565781 .. 16566242
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G151400.1

Sequence Viewer

Length: 462 bp
ATGGAAGCAAATTGTCTTTGTTCATCGCCACTTCCTCCTCCGCCATTTTTCTCTGGTCAATCTCAATGTCCAAAACTTGGATTTGGGCACAGAAGATCAAAGCGATCAACTGCTAGAACTGGCATGGTTGTTGTAGCTGCTACAAGGGACCATTACGGAGGGCGATCTACCGTCGACGAGAGCTTGATTGTTCTGAGAAAACGTATTCATGAGATGAAAATGGTGGAGAGGAACTACGAGCCTCCTCAACATTGGATGCATTGGGAGAAGCAATGCTACGCAAGTTATGATGAGTATATTTGCAATTTGGTCGGTTGTCTTCAATCATATCTCATGAACACTAGGCCTAGTTTAGCTCTCTCCATGATGCTTCTCGTCACCGTGAGCGTCCCAGCGTCGACGGTCATGATCTTGCTGCGTTTCATGGAGGTGGCTAATGGCGCCGTTCATCATCTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

9.0

Isoelectric Point (pI)

72.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 2 cut(s) 174, 398
AciI CCGC 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 3 cut(s) 137, 183, 356
AluI AGCT 3 cut(s) 137, 183, 356
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 137, 415
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 90
BanI GGYRCC 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 124, 402
BceAI ACGGC 1 cut(s) 428
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BfaI CTAG 3 cut(s) 114, 342, 348
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 2 cut(s) 138, 416
BlsI GCNGC 2 cut(s) 139, 417
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 149, 442
BmsI GCATC 2 cut(s) 246, 357
BpiI GAAGAC 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 278
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 27, 234
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 2 cut(s) 124, 402
BseYI CCCAGC 1 cut(s) 391
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 440
BslFI GGGAC 2 cut(s) 161, 374
BslI CCNNNNNNNGG 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 161, 374
BsnI GGCC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 4 cut(s) 95, 104, 164, 408
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 186
BspHI TCATGA 3 cut(s) 208, 333, 405
BspLI GGNNCC 2 cut(s) 149, 442
BspT107I GGYRCC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 124
BssMI GATC 4 cut(s) 95, 104, 164, 408
BssNI GRCGYC 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 172, 382, 403
BstACI GRCGYC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 194, 455
BstF5I GGATG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 4 cut(s) 98, 107, 167, 411
BstMBI GATC 4 cut(s) 95, 104, 164, 408
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 124, 402
BstV2I GAAGAC 1 cut(s) 311
BsuRI GGCC 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 261
CciI TCATGA 3 cut(s) 208, 333, 405
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 2 cut(s) 376, 384
CviAII CATG 6 cut(s) 124, 209, 334, 364, 406, 424
CviJI RGCY 6 cut(s) 137, 183, 241, 346, 356, 434
CviKI_1 RGCY 6 cut(s) 137, 183, 241, 346, 356, 434
DdeI CTNAG 2 cut(s) 194, 455
DinI GGCGCC 1 cut(s) 442
DpnI GATC 4 cut(s) 97, 106, 166, 410
DpnII GATC 4 cut(s) 95, 104, 164, 408
EciI GGCGGA 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 261
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
FaeI CATG 6 cut(s) 127, 212, 337, 367, 409, 427
FaiI YATR 9 cut(s) 125, 210, 288, 297, 328, 335, 365, 407, 425
FaqI GGGAC 2 cut(s) 161, 374
FatI CATG 6 cut(s) 123, 208, 333, 363, 405, 423
FblI GTMKAC 2 cut(s) 174, 398
Fnu4HI GCNGC 2 cut(s) 138, 416
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 138, 416
FspBI CTAG 3 cut(s) 114, 342, 348
GlaI GCGC 1 cut(s) 442
GluI GCNGC 2 cut(s) 138, 416
GsaI CCCAGC 1 cut(s) 395
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 1 cut(s) 346
HgaI GACGC 2 cut(s) 376, 384
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 6 cut(s) 127, 212, 337, 367, 409, 427
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 2 cut(s) 175, 399
HindII GTYRAC 2 cut(s) 175, 399
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 175, 399
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 3 cut(s) 209, 334, 406
Hpy8I GTNNAC 2 cut(s) 175, 399
Hpy99I CGWCG 4 cut(s) 176, 179, 400, 403
HpyCH4III ACNGT 3 cut(s) 172, 382, 403
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 259, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 2 cut(s) 194, 455
HpySE526I ACGT 1 cut(s) 202
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 6 cut(s) 127, 212, 337, 367, 409, 427
HspAI GCGC 1 cut(s) 441
KasI GGCGCC 1 cut(s) 440
Kzo9I GATC 4 cut(s) 95, 104, 164, 408
LpnPI CCDG 3 cut(s) 39, 105, 405
Lsp1109I GCAGC 2 cut(s) 124, 402
LweI GCATC 2 cut(s) 246, 357
MaeI CTAG 3 cut(s) 114, 342, 348
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 376
MalI GATC 4 cut(s) 97, 106, 166, 410
MboI GATC 4 cut(s) 95, 104, 164, 408
MboII GAAGA 2 cut(s) 105, 311
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 2 cut(s) 10, 304
Mly113I GGCGCC 1 cut(s) 441
MnlI CCTC 7 cut(s) 45, 48, 152, 222, 252, 255, 421
Mph1103I ATGCAT 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 440
NarI GGCGCC 1 cut(s) 441
NdeII GATC 4 cut(s) 95, 104, 164, 408
NlaIII CATG 6 cut(s) 127, 212, 337, 367, 409, 427
NlaIV GGNNCC 2 cut(s) 149, 442
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 261
PagI TCATGA 3 cut(s) 208, 333, 405
PceI AGGCCT 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 2 cut(s) 139, 417
PluTI GGCGCC 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 391
PspN4I GGNNCC 2 cut(s) 149, 442
PspPI GGNCC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 428
SalI GTCGAC 2 cut(s) 173, 397
SatI GCNGC 2 cut(s) 138, 416
Sau3AI GATC 4 cut(s) 95, 104, 164, 408
Sau96I GGNCC 1 cut(s) 148
SduI GDGCHC 1 cut(s) 90
SetI ASST 5 cut(s) 139, 185, 205, 358, 432
SfaNI GCATC 2 cut(s) 246, 357
SfoI GGCGCC 1 cut(s) 442
SgrDI CGTCGACG 2 cut(s) 173, 397
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 2 cut(s) 10, 304
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 1 cut(s) 41
SspDI GGCGCC 1 cut(s) 440
SspMI CTAG 3 cut(s) 114, 342, 348
StuI AGGCCT 1 cut(s) 346
TaaI ACNGT 3 cut(s) 172, 382, 403
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 174, 398
TasI AATT 2 cut(s) 10, 304
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 137, 415
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 6 cut(s) 12, 197, 230, 350, 412, 437
TspGWI ACGGA 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 148
XmiI GTMKAC 2 cut(s) 174, 398
XspI CTAG 3 cut(s) 114, 342, 348
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.