Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

151057 .. 151971

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAGCTACACTGTTTTCTTCACCGCCTTCGATTTCACCACTCCGATTCCATCCACTGGTTCTTTCTCAAAGAGCCATCATTCCCAAGAAGAAGAAGATGACGATGAGAGTCTCTGCTGCGGCGTCATCAGGAAAAGATCATTACTATGGAGGAGGAAGATTGGTGGACGAGAACATGATCGTTCTTAGGAAACGTATCCACGAGATGAAGATGGTCGAGCGTAACTACGAGCCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTTTACAACAGCTACGACTCTGTTATCTGCGACTCCGTTGGTCTTCTTCAGAGCTTCCTCATGAACTCTCGACCCACTGTAGCAATCGCGACGCTGCTTTTCCTCCTCGTCAGCGTTCCCGTTTCCTCCACGGTGATCGCGTTTCGCCTTATTGATCTTTTGCATTGGCTTCTCGCAGCCGCAACATCAGCCCACGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.62

Weight (kDa)

9.67

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccII	CGCG	2 cut(s)	356, 407
AciI	CCGC	3 cut(s)	26, 122, 447
AclI	AACGTT	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	299
AcvI	CACGTG	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	8, 279, 321
AluI	AGCT	3 cut(s)	8, 279, 321
Alw26I	GTCTC	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	119, 361, 443
AsuHPI	GGTGA	3 cut(s)	15, 30, 412
BauI	CACGAG	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	106, 348, 455
BccI	CCATC	4 cut(s)	60, 86, 208, 244
BciVI	GTATCC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	5 cut(s)	120, 123, 362, 444, 447
BlsI	GCNGC	5 cut(s)	121, 124, 363, 445, 448
BpiI	GAAGAC	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	463
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	63, 251
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	52, 255
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	2 cut(s)	63, 251
BseRI	GAGGAG	2 cut(s)	168, 362
BseXI	GCAGC	3 cut(s)	106, 348, 455
Bsh1236I	CGCG	2 cut(s)	356, 407
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	118
Bsp143I	GATC	4 cut(s)	139, 180, 402, 421
Bsp68I	TCGCGA	1 cut(s)	356
BspACI	CCGC	3 cut(s)	26, 122, 447
BspFNI	CGCG	2 cut(s)	356, 407
BspHI	TCATGA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	63, 251
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	4 cut(s)	139, 180, 402, 421
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	15, 346, 400
BstACI	GRCGYC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	463
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	52, 255
BstFNI	CGCG	2 cut(s)	356, 407
BstKTI	GATC	4 cut(s)	142, 183, 405, 424
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	4 cut(s)	139, 180, 402, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 464
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	2 cut(s)	356, 407
BstV1I	GCAGC	3 cut(s)	106, 348, 455
BstV2I	GAAGAC	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	52, 255
BtsIMutI	CAGTG	4 cut(s)	11, 56, 244, 342
BtuMI	TCGCGA	1 cut(s)	356
CciI	TCATGA	1 cut(s)	327
CseI	GACGC	2 cut(s)	114, 367
CspCI	CAANNNNNGTGG	1 cut(s)	449
CviAII	CATG	2 cut(s)	178, 328
CviJI	RGCY	9 cut(s)	8, 77, 235, 279, 321, 436, 446, 458, 467
CviKI_1	RGCY	9 cut(s)	8, 77, 235, 279, 321, 436, 446, 458, 467
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	4 cut(s)	141, 182, 404, 423
DpnII	GATC	4 cut(s)	139, 180, 402, 421
Eco57I	CTGAAG	1 cut(s)	299
Eco72I	CACGTG	1 cut(s)	463
FaeI	CATG	2 cut(s)	181, 331
FaiI	YATR	3 cut(s)	150, 179, 329
FatI	CATG	2 cut(s)	177, 327
Fnu4HI	GCNGC	5 cut(s)	120, 123, 362, 444, 447
FokI	GGATG	2 cut(s)	39, 262
Fsp4HI	GCNGC	5 cut(s)	120, 123, 362, 444, 447
GluI	GCNGC	5 cut(s)	120, 123, 362, 444, 447
HgaI	GACGC	2 cut(s)	114, 367
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	181, 331
HinfI	GANTC	4 cut(s)	48, 111, 284, 299
HphI	GGTGA	3 cut(s)	15, 30, 412
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	47, 318
Hpy188III	TCNNGA	4 cut(s)	132, 328, 336, 355
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	39, 249
HpyCH4III	ACNGT	3 cut(s)	15, 346, 400
HpyCH4IV	ACGT	3 cut(s)	196, 265, 462
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 464
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	3 cut(s)	196, 265, 462
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	181, 331
Kzo9I	GATC	4 cut(s)	139, 180, 402, 421
LpnPI	CCDG	3 cut(s)	44, 117, 232
Lsp1109I	GCAGC	3 cut(s)	106, 348, 455
MaeII	ACGT	3 cut(s)	196, 265, 462
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	4 cut(s)	141, 182, 404, 423
MboI	GATC	4 cut(s)	139, 180, 402, 421
MboII	GAAGA	8 cut(s)	12, 103, 106, 109, 171, 223, 302, 305
MlyI	GAGTC	3 cut(s)	120, 278, 293
MnlI	CCTC	7 cut(s)	146, 149, 246, 335, 380, 383, 403
MslI	CAYNNNNRTG	1 cut(s)	147
MvnI	CGCG	2 cut(s)	356, 407
MwoI	GCNNNNNNNGC	2 cut(s)	455, 464
NdeII	GATC	4 cut(s)	139, 180, 402, 421
NlaIII	CATG	2 cut(s)	181, 331
NruI	TCGCGA	1 cut(s)	356
PagI	TCATGA	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	5 cut(s)	121, 124, 363, 445, 448
PleI	GAGTC	3 cut(s)	119, 278, 293
PmaCI	CACGTG	1 cut(s)	463
PmlI	CACGTG	1 cut(s)	463
PpsI	GAGTC	3 cut(s)	119, 278, 293
Ppu21I	YACGTR	1 cut(s)	463
Psp1406I	AACGTT	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	463
RruI	TCGCGA	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	5 cut(s)	120, 123, 362, 444, 447
Sau3AI	GATC	4 cut(s)	139, 180, 402, 421
SchI	GAGTC	3 cut(s)	120, 278, 293
SetI	ASST	6 cut(s)	10, 199, 268, 281, 323, 465
SfcI	CTRYAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	147
SsiI	CCGC	3 cut(s)	26, 122, 447
TaaI	ACNGT	3 cut(s)	15, 346, 400
TaiI	ACGT	3 cut(s)	199, 268, 465
TaqI	TCGA	3 cut(s)	32, 219, 337
TauI	GCSGC	2 cut(s)	125, 449
TfiI	GAWTC	1 cut(s)	48
TscAI	CASTG	4 cut(s)	18, 63, 251, 349
TseI	GCWGC	3 cut(s)	119, 361, 443
TspDTI	ATGAA	2 cut(s)	224, 344
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	4 cut(s)	18, 63, 251, 349
Van91I	CCANNNNNTGG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.