Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

59937974 .. 59938693

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G032820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCATCAACTTCTTCACTGCTTCTCTCTTCTTCTTCTTCTTCCTCCTCCATTTTCAACCCGTTTTCGACTTCTTCACCGAAAGCGGGAAGCGTAATTCGACAACAACGGAGGTCTAGAATTGTTGCATCGAGTAGAAAAGAAGCGCATGATCACCACCAGAACTACAGCAGCAGGCTCGTGGATGAGAACATGATCGTTTTGAGGAAGAAAATCCACGAGATGAAGATGGTAGAGAGGAACTACGAACCTCCGGCGGAGTGGATGGACTGGGAGAAGAGGTACTACACCAGCTACGACTCGTTCATATGCCAAGTCATGGGTTTGTTGCAGTCGCAGTTGATGAACACCAGGCCGAGCTTGGCTCTCGCATTCATGGCTTTGATCCTTTTGAGCGTCCCGGCCTCGACGTTCATGGTGTTCTCCCATTTGCTGGAGATCACAAAAGGAGCATTGACCAGTGGTTTTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.83

Weight (kDa)

9.56

Isoelectric Point (pI)

62.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	319, 433
AciI	CCGC	2 cut(s)	86, 257
AclWI	GGATC	1 cut(s)	379
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	3 cut(s)	86, 319, 433
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	294, 360
AluI	AGCT	2 cut(s)	294, 360
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	353, 402
ApeKI	GCWGC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	69, 146
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BauI	CACGAG	2 cut(s)	179, 218
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	223, 259
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	352
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	352, 401
BmrFI	CCNGG	2 cut(s)	352, 401
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	14, 137
BmuI	ACTGGG	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpmI	CTGGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 319, 433
Bse1I	ACTGG	2 cut(s)	275, 459
BseBI	CCWGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	190, 270
BseLI	CCNNNNNNNGG	3 cut(s)	86, 319, 433
BseNI	ACTGG	2 cut(s)	275, 459
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	2 cut(s)	355, 404
BsiSI	CCGG	2 cut(s)	254, 401
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	86, 319, 433
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	355, 404
Bsp143I	GATC	4 cut(s)	151, 195, 384, 438
BspACI	CCGC	2 cut(s)	86, 257
BspANI	GGCC	2 cut(s)	355, 404
BspPI	GGATC	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	275, 459
BssMI	GATC	4 cut(s)	151, 195, 384, 438
BssSI	CACGAG	2 cut(s)	179, 218
Bst2BI	CACGAG	2 cut(s)	179, 218
Bst2UI	CCWGG	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	34, 272
BstC8I	GCNNGC	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	190, 270
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	154, 198, 387, 441
BstMBI	GATC	4 cut(s)	151, 195, 384, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	350, 399
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	355, 404
BtsCI	GGATG	2 cut(s)	190, 270
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	17, 466
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	148
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	5 cut(s)	149, 193, 319, 376, 415
CviJI	RGCY	7 cut(s)	178, 294, 355, 360, 365, 380, 404
CviKI_1	RGCY	7 cut(s)	178, 294, 355, 360, 365, 380, 404
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	4 cut(s)	153, 197, 386, 440
DpnII	GATC	4 cut(s)	151, 195, 384, 438
Eam1104I	CTCTTC	2 cut(s)	34, 272
EarI	CTCTTC	2 cut(s)	34, 272
EciI	GGCGGA	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	350
FaeI	CATG	5 cut(s)	152, 196, 322, 379, 418
FaiI	YATR	8 cut(s)	150, 194, 308, 310, 320, 377, 416, 475
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	5 cut(s)	148, 192, 318, 375, 414
FauI	CCCGC	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	2 cut(s)	197, 277
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	355, 404
HapII	CCGG	2 cut(s)	254, 401
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	5 cut(s)	152, 196, 322, 379, 418
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	2 cut(s)	254, 401
HphI	GGTGA	2 cut(s)	69, 146
Hpy188III	TCNNGA	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	128, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	5 cut(s)	152, 196, 322, 379, 418
HspAI	GCGC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	151, 195, 384, 438
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	14, 137
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	410
MalI	GATC	4 cut(s)	153, 197, 386, 440
MboI	GATC	4 cut(s)	151, 195, 384, 438
MluCI	AATT	2 cut(s)	96, 120
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	8 cut(s)	55, 58, 105, 198, 231, 261, 273, 415
MspI	CCGG	2 cut(s)	254, 401
MspR9I	CCNGG	2 cut(s)	352, 401
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	401
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	4 cut(s)	151, 195, 384, 438
NlaIII	CATG	5 cut(s)	152, 196, 322, 379, 418
NmeAIII	GCCGAG	1 cut(s)	381
PctI	GAATGC	1 cut(s)	371
PflMI	CCANNNNNTGG	2 cut(s)	319, 433
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	4 cut(s)	151, 195, 384, 438
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	352, 401
SetI	ASST	6 cut(s)	116, 253, 284, 296, 362, 413
SfaNI	GCATC	2 cut(s)	14, 137
SfcI	CTRYAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	96, 120
SsiI	CCGC	2 cut(s)	86, 257
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	350, 399
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	4 cut(s)	68, 100, 131, 407
TasI	AATT	2 cut(s)	96, 120
TscAI	CASTG	2 cut(s)	24, 466
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	5 cut(s)	239, 295, 359, 364, 403
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	2 cut(s)	24, 466
Van91I	CCANNNNNTGG	2 cut(s)	319, 433
XbaI	TCTAGA	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.