Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Reverse (-)

33264520 .. 33265017

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1259700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAAGCAACTTGTCTATGTTCCTCCTCACTTCTTCCTTTGCCATTTTTGCCTGCAGGCAAATCTCAGTGCACCAGAACTGGATTACTGCACAGGAGAACAATGCCAAAGAGATCATCAAGTGCTAGTGCCGGCACTACCGGTCTTGTCATTGTAGCAGCTGCGAGAGACAACCGCGAAGGGCCATGGCGATCTGTGGTCGATGAGAGCTTGATCGTTCTGAGAAAACGCATTCACGAGATGAAAATGGTGGAGAGGAACTACGAGCCTCCTCAGGAATGGATGCATTGGGAGAAGCAGTGTTACGCAAGTTATGATGACCATGTTTGTAACATGGTGGGTTGTCTTCAATCGTGCCTCATGAACACCAGGCCTAGTGTAGCCCTTTCTGTGCTACTTCTATTCGCCGTCAGCGTCCCGGCATCAACGGCCATGATCTTGCTACGGTTCATGGAGGTGGCTAATGGGGTTCTGTCTACCATTCATCATTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.35

Weight (kDa)

8.77

Isoelectric Point (pI)

67.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	476
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	429
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	161, 210
AluI	AGCT	2 cut(s)	161, 210
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	162
Alw44I	GTGCAC	1 cut(s)	70
AoxI	GGCC	3 cut(s)	182, 371, 429
ApaLI	GTGCAC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	158, 161
AsiGI	ACCGGT	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	148, 170
BceAI	ACGGC	2 cut(s)	392, 444
BciT130I	CCWGG	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	2 cut(s)	126, 375
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme1390I	CCNGG	2 cut(s)	370, 419
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	370, 419
BmsI	GCATC	2 cut(s)	273, 431
BpiI	GAAGAC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bse118I	RCCGGY	2 cut(s)	131, 140
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	80, 212, 287
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	16, 261
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	148, 170
BsgI	GTGCAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	184, 373, 431
BshTI	ACCGGT	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	132, 141, 419
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	184, 373, 431
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	113, 191, 213, 435
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	3 cut(s)	184, 373, 431
BspCNI	CTCAG	3 cut(s)	79, 213, 286
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	58
BsrFI	RCCGGY	2 cut(s)	131, 140
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	2 cut(s)	131, 140
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	4 cut(s)	113, 191, 213, 435
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	447
BstC8I	GCNNGC	3 cut(s)	54, 58, 133
BstDEI	CTNAG	3 cut(s)	66, 221, 273
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	4 cut(s)	116, 194, 216, 438
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	113, 191, 213, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 428
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	368, 417
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	148, 170
BstV2I	GAAGAC	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	184, 373, 431
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	288
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	74, 305
Cac8I	GCNNGC	3 cut(s)	54, 58, 133
CciI	TCATGA	1 cut(s)	360
Cfr10I	RCCGGY	2 cut(s)	131, 140
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	403
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	6 cut(s)	186, 323, 334, 361, 433, 451
CviJI	RGCY	8 cut(s)	161, 184, 210, 268, 373, 383, 431, 461
CviKI_1	RGCY	8 cut(s)	161, 184, 210, 268, 373, 383, 431, 461
DdeI	CTNAG	3 cut(s)	66, 221, 273
DpnI	GATC	4 cut(s)	115, 193, 215, 437
DpnII	GATC	4 cut(s)	113, 191, 213, 435
EaeI	YGGCCR	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	6 cut(s)	189, 326, 337, 364, 436, 454
FaiI	YATR	8 cut(s)	19, 187, 315, 324, 335, 362, 434, 452
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	6 cut(s)	185, 322, 333, 360, 432, 450
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	2 cut(s)	159, 162
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	159, 162
FspBI	CTAG	2 cut(s)	126, 375
GluI	GCNGC	2 cut(s)	159, 162
HaeIII	GGCC	3 cut(s)	184, 373, 431
HapII	CCGG	3 cut(s)	132, 141, 419
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	6 cut(s)	189, 326, 337, 364, 436, 454
HpaII	CCGG	3 cut(s)	132, 141, 419
Hpy166II	GTNNAC	2 cut(s)	72, 477
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	236, 275, 361
Hpy8I	GTNNAC	2 cut(s)	72, 477
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4V	TGCA	4 cut(s)	56, 72, 91, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 428
HpyF3I	CTNAG	3 cut(s)	66, 221, 273
Hsp92II	CATG	6 cut(s)	189, 326, 337, 364, 436, 454
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	113, 191, 213, 435
Lsp1109I	GCAGC	2 cut(s)	148, 170
LweI	GCATC	2 cut(s)	273, 431
MaeI	CTAG	2 cut(s)	126, 375
MaeIII	GTNAC	2 cut(s)	302, 329
MalI	GATC	4 cut(s)	115, 193, 215, 437
MboI	GATC	4 cut(s)	113, 191, 213, 435
MboII	GAAGA	2 cut(s)	26, 338
MhlI	GDGCHC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	34, 37, 249, 279, 282, 368, 448
Mph1103I	ATGCAT	1 cut(s)	288
MroNI	GCCGGC	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	132, 141, 419
MspR9I	CCNGG	2 cut(s)	370, 419
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	49, 428
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	419
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	113, 191, 213, 435
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	6 cut(s)	189, 326, 337, 364, 436, 454
NsiI	ATGCAT	1 cut(s)	288
PagI	TCATGA	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	160, 163
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	455
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	4 cut(s)	113, 191, 213, 435
Sau96I	GGNCC	1 cut(s)	182
SbfI	CCTGCAGG	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	370, 419
SdaI	CCTGCAGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	3 cut(s)	163, 212, 459
SfaNI	GCATC	2 cut(s)	273, 431
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	455
Sse8387I	CCTGCAGG	1 cut(s)	58
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	2 cut(s)	126, 375
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	2 cut(s)	368, 417
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	74, 305
TseI	GCWGC	2 cut(s)	158, 161
TspDTI	ATGAA	4 cut(s)	257, 377, 439, 473
TspRI	CASTG	2 cut(s)	74, 305
VneI	GTGCAC	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	476
XspI	CTAG	2 cut(s)	126, 375
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.