Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007287

Physical Location & Seq

Genomic Coordinates Reverse (-)

8273423 .. 8275350

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGGTTGGGTGTGAAAACTCGAAGAAATCAGACAGTGGTTCGAACGAAGACAAGAGCTTGTCCGATGACATCATCAATCTTGATCAAGGAGATCCTACGGCGTTTCAAGAGTATTGGATGAAGAAAAAGGACAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAGCGACACGAAGAACGTGTGTTGGTTCCTAGAGCCAGAGCTTGAGAAGGCGATCAAGGCGTTGCATGGTGCAATCGGTAACGCAGCGACCGAGGAACGCTACATCGTGGTGGGGACTGGCTCTTCACAGCTTTGTCAGGCCGCTTTGTTTGCACTTTCATCGCTCTCTGAGGTCAAACCTGTCAGCATCGTCGCAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGCATCGTATCTTCAATCGACGCTATACAAATGGGAAGGAGACGCAAGGACGTTCGACAAAAAGGGACCGTACATCGAGTTGGTGACGTCACCGAACAACCCTGATGGGATCATGAGAGAGCCGGTGGTGAATCGTAGGGAGGGTGGGAAAGTGATCCACGACTTGGCGTATTACTGGCCACACTACACTCCCATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACCGGCCACGCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAGAGGTGGCTAAGAAGATGGTGCACTACTTAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCACCACAATTCTAAACGAACTGACAAAAACATGTAGGACACAATCGGAGAGCTTCTTCGAGTATGGCTACGAGAAGATGAAGTCACGGTGGGAGAGGCTACGTGAGGTAGTCGAATCCGGTGACGCATTCACTCTCCCTAATTACCCTCAAGACTTCTGCAACTTCTTTGGCAAAACCCTCTCCACTTCTCCTGCGTTTGCGTGGTTGGGGTATAAAGAGGAAAGAGATCTCGGAAGTCTCTTGAAGGAGAAGAAGGTTTTGACGAGAGGAGGAGACCGATGTGGTTGTAACAAGAGGTACGTCCGTGTCAGCATGCTTAGCCGCGACGATGACTTTGACGTCTCTCTCCAAAGACTCGCTACCATCAAGGATCTCAAATGCGTCGAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008483 GO:0016740 GO:0016769 GO:0050362 GO:0070529 GO:0080097

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

388

Amino Acids

44.06

Weight (kDa)

6.36

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	24 - 366	1.8e-11	Aminotransferase class I and II
Alliinase_C	PF04864	26 - 380	4.8e-167	Allinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23320 AT1G70560
fragaria_vesca	FvH4_4g25850
malus_domestica	MD13G1097300.v1.1 MD16G1098400.v1.1
prunus_persica	Prupe.1G248200_v2.0.a1 Prupe.1G248300_v2.0.a1
pyrus_communis	pycom16g08370
rosa_chinensis	RchiOBHm_Chr4g0433291
rosa_laevigata	RLG00000006766
rosa_multiflora	Rmu_co8104156.1_g000001 Rmu_sc0000354.1_g000004 Rmu_sc0002512.1_g000004
rosa_roxburghii	Rroxscaffold_5G00374850 Rroxscaffold_5G00381590
rosa_rugosa	Rorug04G0267700 Rorug04G0267700 Rorug04G0267800
rosa_samantha	Rh4AG322400 Rh4BG329700 Rh4BG329800 Rh4CG345000 Rh4CG345200 Rh4DG326500
rosa_wichuraiana	Rw4G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1112
AatII	GACGTC	2 cut(s)	497, 1116
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccII	CGCG	1 cut(s)	1098
AciI	CCGC	3 cut(s)	321, 377, 1096
AclWI	GGATC	5 cut(s)	89, 171, 524, 556, 1152
AcoI	YGGCCR	2 cut(s)	584, 655
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	2 cut(s)	494, 1113
AfaI	GTAC	3 cut(s)	142, 479, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	571
AflIII	ACRYGT	2 cut(s)	195, 803
AgsI	TTSAA	3 cut(s)	110, 422, 1018
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	60, 220, 310, 825
AluI	AGCT	4 cut(s)	60, 220, 310, 825
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	4 cut(s)	441, 1016, 1041, 1120
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	5 cut(s)	89, 171, 524, 556, 1152
Ama87I	CYCGRG	1 cut(s)	768
AoxI	GGCC	3 cut(s)	318, 584, 655
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	263, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	1091, 1123
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	7 cut(s)	160, 489, 502, 547, 628, 643, 905
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	768
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	723
BaeI	ACNNNNGTAYC	2 cut(s)	1063, 1096
BalI	TGGCCA	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	275, 386
BccI	CCATC	4 cut(s)	506, 608, 709, 1145
BceAI	ACGGC	2 cut(s)	117, 594
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	4 cut(s)	441, 1016, 1041, 1120
BfaI	CTAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	1000
BisI	GCNGC	4 cut(s)	264, 321, 375, 1096
BlpI	GCTNAGC	1 cut(s)	1091
BlsI	GCNGC	4 cut(s)	265, 322, 376, 1097
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	3 cut(s)	206, 381, 474
BmsI	GCATC	2 cut(s)	375, 419
BpiI	GAAGAC	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	1091
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	242, 906
BsaAI	YACGTR	2 cut(s)	400, 875
BsaHI	GRCGYC	2 cut(s)	494, 1113
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	890
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse118I	RCCGGY	2 cut(s)	529, 653
Bse1I	ACTGG	2 cut(s)	301, 587
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	301, 587
BseRI	GAGGAG	3 cut(s)	419, 1056, 1059
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	275, 386
BseYI	CCCAGC	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	1098
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	320, 586, 657
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	723
BsiHKCI	CYCGRG	1 cut(s)	768
BsiSI	CCGG	3 cut(s)	530, 654, 891
BslFI	GGGAC	2 cut(s)	307, 486
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	4 cut(s)	441, 1016, 1041, 1120
BsmBI	CGTCTC	2 cut(s)	441, 1120
BsmFI	GGGAC	2 cut(s)	307, 486
BsmI	GAATGC	1 cut(s)	899
BsnI	GGCC	3 cut(s)	320, 586, 657
Bso31I	GGTCTC	1 cut(s)	1041
BsoBI	CYCGRG	1 cut(s)	768
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
Bsp1720I	GCTNAGC	1 cut(s)	1091
BspACI	CCGC	3 cut(s)	321, 377, 1096
BspANI	GGCC	3 cut(s)	320, 586, 657
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	1098
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	206, 381, 474
BspPI	GGATC	5 cut(s)	89, 171, 524, 556, 1152
BspQI	GCTCTTC	2 cut(s)	307, 638
BspT104I	TTCGAA	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	1041
BsrFI	RCCGGY	2 cut(s)	529, 653
BsrI	ACTGG	2 cut(s)	301, 587
BssAI	RCCGGY	2 cut(s)	529, 653
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
BssNI	GRCGYC	2 cut(s)	494, 1113
Bst4CI	ACNGT	4 cut(s)	38, 145, 477, 861
Bst6I	CTCTTC	2 cut(s)	307, 638
BstACI	GRCGYC	2 cut(s)	494, 1113
BstBAI	YACGTR	2 cut(s)	400, 875
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	1088
BstDEI	CTNAG	3 cut(s)	348, 708, 1091
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	1098
BstKTI	GATC	8 cut(s)	88, 97, 166, 234, 519, 564, 1003, 1147
BstMAI	GTCTC	4 cut(s)	441, 1016, 1041, 1120
BstMBI	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 329, 1092
BstNSI	RCATGY	2 cut(s)	807, 1090
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	1 cut(s)	1098
BstV1I	GCAGC	2 cut(s)	275, 386
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	4 cut(s)	94, 163, 1000, 1144
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	4 cut(s)	94, 163, 1000, 1144
BsuRI	GGCC	3 cut(s)	320, 586, 657
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	1088
CciI	TCATGA	1 cut(s)	519
Cfr10I	RCCGGY	2 cut(s)	529, 653
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	4 cut(s)	436, 458, 905, 1144
Csp6I	GTAC	3 cut(s)	141, 478, 1072
CviAII	CATG	6 cut(s)	159, 245, 520, 620, 804, 1087
CviQI	GTAC	3 cut(s)	141, 478, 1072
DdeI	CTNAG	3 cut(s)	348, 708, 1091
DpnI	GATC	8 cut(s)	87, 96, 165, 233, 518, 563, 1002, 1146
DpnII	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
DrdI	GACNNNNNNGTC	1 cut(s)	1112
DseDI	GACNNNNNNGTC	1 cut(s)	1112
EaeI	YGGCCR	2 cut(s)	584, 655
Eam1104I	CTCTTC	2 cut(s)	307, 638
EarI	CTCTTC	2 cut(s)	307, 638
Eco31I	GGTCTC	1 cut(s)	1041
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	768
Esp3I	CGTCTC	2 cut(s)	441, 1120
FaeI	CATG	6 cut(s)	162, 248, 523, 623, 807, 1090
FaqI	GGGAC	2 cut(s)	307, 486
FatI	CATG	6 cut(s)	158, 244, 519, 619, 803, 1086
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	264, 321, 375, 1096
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	4 cut(s)	264, 321, 375, 1096
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	4 cut(s)	264, 321, 375, 1096
GsaI	CCCAGC	1 cut(s)	666
HaeIII	GGCC	3 cut(s)	320, 586, 657
HapII	CCGG	3 cut(s)	530, 654, 891
HgaI	GACGC	4 cut(s)	436, 458, 905, 1144
Hin1I	GRCGYC	2 cut(s)	494, 1113
Hin1II	CATG	6 cut(s)	162, 248, 523, 623, 807, 1090
HinfI	GANTC	4 cut(s)	538, 758, 887, 1128
HpaII	CCGG	3 cut(s)	530, 654, 891
HphI	GGTGA	7 cut(s)	160, 489, 502, 547, 628, 643, 905
Hpy166II	GTNNAC	2 cut(s)	141, 721
Hpy188I	TCNGA	6 cut(s)	34, 67, 168, 349, 820, 1007
Hpy188III	TCNNGA	6 cut(s)	83, 110, 520, 614, 923, 1015
Hpy8I	GTNNAC	2 cut(s)	141, 721
Hpy99I	CGWCG	4 cut(s)	374, 430, 1103, 1160
HpyAV	CCTTC	7 cut(s)	220, 437, 649, 685, 748, 1012, 1021
HpyCH4III	ACNGT	4 cut(s)	38, 145, 477, 861
HpyCH4IV	ACGT	7 cut(s)	195, 399, 458, 494, 874, 1074, 1113
HpyCH4V	TGCA	5 cut(s)	244, 251, 332, 721, 933
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 329, 1092
HpyF3I	CTNAG	3 cut(s)	348, 708, 1091
HpySE526I	ACGT	7 cut(s)	195, 399, 458, 494, 874, 1074, 1113
Hsp92I	GRCGYC	2 cut(s)	494, 1113
Hsp92II	CATG	6 cut(s)	162, 248, 523, 623, 807, 1090
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
LguI	GCTCTTC	2 cut(s)	307, 638
Lsp1109I	GCAGC	2 cut(s)	275, 386
LweI	GCATC	2 cut(s)	375, 419
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	7 cut(s)	195, 399, 458, 494, 874, 1074, 1113
MaeIII	GTNAC	9 cut(s)	173, 257, 490, 495, 666, 759, 855, 893, 1061
MalI	GATC	8 cut(s)	87, 96, 165, 233, 518, 563, 1002, 1146
MboI	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
MflI	RGATCY	4 cut(s)	94, 163, 1000, 1144
MhlI	GDGCHC	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	586
MluCI	AATT	2 cut(s)	780, 913
MluNI	TGGCCA	1 cut(s)	586
MlyI	GAGTC	2 cut(s)	767, 1122
Mox20I	TGGCCA	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	586
MseI	TTAA	1 cut(s)	728
MslI	CAYNNNNRTG	4 cut(s)	287, 398, 701, 746
Msp20I	TGGCCA	1 cut(s)	586
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	3 cut(s)	530, 654, 891
Mva1269I	GAATGC	1 cut(s)	899
MvnI	CGCG	1 cut(s)	1098
MwoI	GCNNNNNNNGC	3 cut(s)	236, 329, 1092
NdeII	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
NlaIII	CATG	6 cut(s)	162, 248, 523, 623, 807, 1090
NlaIV	GGNNCC	3 cut(s)	206, 381, 474
NmuCI	GTSAC	6 cut(s)	490, 495, 666, 759, 855, 893
NspI	RCATGY	2 cut(s)	807, 1090
NspV	TTCGAA	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	1090
PaeR7I	CTCGAG	1 cut(s)	768
PagI	TCATGA	1 cut(s)	519
PciI	ACATGT	1 cut(s)	803
PciSI	GCTCTTC	2 cut(s)	307, 638
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	899
PfeI	GAWTC	2 cut(s)	538, 887
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	265, 322, 376, 1097
PleI	GAGTC	2 cut(s)	766, 1122
PpsI	GAGTC	2 cut(s)	766, 1122
Ppu21I	YACGTR	2 cut(s)	400, 875
PscI	ACATGT	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	662
PspN4I	GGNNCC	3 cut(s)	206, 381, 474
PspPI	GGNCC	1 cut(s)	473
PspXI	VCTCGAGB	1 cut(s)	768
PsuI	RGATCY	4 cut(s)	94, 163, 1000, 1144
RsaI	GTAC	3 cut(s)	142, 479, 1073
RsaNI	GTAC	3 cut(s)	141, 478, 1072
RseI	CAYNNNNRTG	4 cut(s)	287, 398, 701, 746
SapI	GCTCTTC	2 cut(s)	307, 638
SaqAI	TTAA	1 cut(s)	728
SatI	GCNGC	4 cut(s)	264, 321, 375, 1096
Sau3AI	GATC	8 cut(s)	85, 94, 163, 231, 516, 561, 1000, 1144
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	2 cut(s)	767, 1122
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	2 cut(s)	375, 419
Sfr274I	CTCGAG	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	4 cut(s)	287, 398, 701, 746
SmlI	CTYRAG	3 cut(s)	221, 768, 921
SmoI	CTYRAG	3 cut(s)	221, 768, 921
SphI	GCATGC	1 cut(s)	1090
Sse9I	AATT	2 cut(s)	780, 913
SsiI	CCGC	3 cut(s)	321, 377, 1096
SspMI	CTAG	1 cut(s)	209
TaaI	ACNGT	4 cut(s)	38, 145, 477, 861
TaiI	ACGT	7 cut(s)	198, 402, 461, 497, 877, 1077, 1116
TaqII	GACCGA	2 cut(s)	284, 1065
TasI	AATT	2 cut(s)	780, 913
TauI	GCSGC	2 cut(s)	323, 1098
TfiI	GAWTC	2 cut(s)	538, 887
Tru1I	TTAA	1 cut(s)	728
Tru9I	TTAA	1 cut(s)	728
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	6 cut(s)	490, 495, 666, 759, 855, 893
TseI	GCWGC	2 cut(s)	263, 374
Tsp45I	GTSAC	6 cut(s)	490, 495, 666, 759, 855, 893
TspDTI	ATGAA	3 cut(s)	137, 327, 866
TspGWI	ACGGA	1 cut(s)	1067
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	473
XceI	RCATGY	2 cut(s)	807, 1090
XhoI	CTCGAG	1 cut(s)	768
XspI	CTAG	1 cut(s)	209
ZraI	GACGTC	2 cut(s)	495, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.