Rh4BG329700

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007287
Physical Location & Seq
Forward (+)
49546151 .. 49548787
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG329700.1

Sequence Viewer

Length: 921 bp
ATGTGTGGCACCACTGATCAGAACCCTAACCCTGCAACCCCTAACAAAACACCGTCAGCTAATGGCAATGGCACAACAAGGTCCAGCGTTTCACCTGACACTGTCCTCAATCTCGAACAGGGTGACCCAACAATGTTCGAACCGTACTGGAAAAAGATGGGGGACAAGGGTACGATGGTGATCTCCGGCAGCCAGTGGATGAGCTATGTCAGCGATTTCACCAACATCTGCTTTTTTATGGAGCCAGAATTTGAGGGTGCGGTTAGAAGACTTCATCGGACGGTTGGGAATGCTGTGGTGGACGGCCGTCACATTGTGGTGGGGACAGGCTCCACGCAGCTCTACCAGGCGGCGCTGTATGCTCTCACTTCTCCTGGTGGGGCTGAGCCGATCAGTGTCGTGTCTGCCGCTCCTTACTACTCGTCATATCCAGACGAGACAGACTATCTCCGTTCAGGGCTTTACAGATGGGCAGGTGATGCGTATGCCTTTGATAAGAAGGGACATGGAGATTACATAGAGGTGGTGAACACTCCAAACAACCCAGATGGTACTAATCGGAAAGCCGTGGTGAAATACAGACCAGATGATCAAGTTCAAGGGAAGCTTATTCATGACCTTGCCTACTATTGGCCTCAATACACTGCCATTACTGCTCCTCTCGATGAAGACATTATGTACTTCACATTTTCAAAAAGCACGGGACATGCTGGTTCCCGTATTGGATGGGCTATCGTGAAGGACAAAGAGATTGCTAAGAAGATGGCTAAATTCGTAGAGCTGAGTACACTTGGTGTGTCCAAGGTTTCTCAGCACCGAGCTGCAAAGTTAATGGGAGTGATTTGTGATGGCTATCAAAATTGCAAGGCCAAAAACTCTGAGCTCTTCTTTGAGCACTGCCAGAACCTCATGCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

306

Amino Acids

33.9

Weight (kDa)

6.45

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 37 - 303 4.7e-102 Allinase
Aminotran_1_2 PF00155 81 - 276 5.4e-09 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 410
AciI CCGC 3 cut(s) 260, 350, 408
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 2 cut(s) 248, 770
AdeI CACNNNGTG 2 cut(s) 316, 794
AfaI GTAC 5 cut(s) 146, 172, 553, 680, 787
AfiI CCNNNNNNNGG 1 cut(s) 630
AgsI TTSAA 2 cut(s) 599, 693
AjnI CCWGG 2 cut(s) 345, 373
AluBI AGCT 7 cut(s) 59, 204, 340, 607, 781, 821, 883
AluI AGCT 7 cut(s) 59, 204, 340, 607, 781, 821, 883
Alw21I GWGCWC 2 cut(s) 885, 897
Alw26I GTCTC 1 cut(s) 431
AoxI GGCC 3 cut(s) 304, 632, 867
ApeKI GCWGC 3 cut(s) 189, 337, 821
ApoI RAATTY 2 cut(s) 248, 770
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 7 cut(s) 84, 134, 190, 211, 488, 538, 583
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 885
BbsI GAAGAC 2 cut(s) 274, 675
Bbv12I GWGCWC 2 cut(s) 885, 897
BbvI GCAGC 3 cut(s) 201, 349, 808
BccI CCATC 7 cut(s) 151, 169, 462, 542, 720, 757, 842
BceAI ACGGC 3 cut(s) 291, 319, 551
BciT130I CCWGG 2 cut(s) 347, 375
BclI TGATCA 2 cut(s) 16, 589
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 919
BfoI RGCGCY 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 464
BisI GCNGC 5 cut(s) 190, 338, 351, 408, 822
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 5 cut(s) 191, 339, 352, 409, 823
Bme1390I CCNGG 2 cut(s) 347, 375
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 4 cut(s) 10, 243, 331, 715
BmrFI CCNGG 2 cut(s) 347, 375
BmsI GCATC 1 cut(s) 469
BoxI GACNNNNGTC 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 274, 675
Bpu1102I GCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 138
BsaBI GATNNNNATC 2 cut(s) 179, 852
BsaJI CCNNGG 2 cut(s) 567, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 630
Bse1I ACTGG 2 cut(s) 152, 193
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 2 cut(s) 179, 852
BseBI CCWGG 2 cut(s) 347, 375
BseDI CCNNGG 2 cut(s) 567, 801
BseGI GGATG 2 cut(s) 204, 731
BseJI GATNNNNATC 2 cut(s) 179, 852
BseLI CCNNNNNNNGG 1 cut(s) 630
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 4 cut(s) 375, 773, 824, 870
BseNI ACTGG 2 cut(s) 152, 193
BseRI GAGGAG 1 cut(s) 648
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 201, 349, 808
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 3 cut(s) 306, 634, 869
BshNI GGYRCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 2 cut(s) 885, 897
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 4 cut(s) 176, 337, 516, 717
BslI CCNNNNNNNGG 1 cut(s) 630
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 4 cut(s) 176, 337, 516, 717
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 3 cut(s) 306, 634, 869
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 885, 897
Bsp143I GATC 4 cut(s) 16, 180, 390, 589
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 3 cut(s) 260, 350, 408
BspANI GGCC 3 cut(s) 306, 634, 869
BspCNI CTCAG 4 cut(s) 376, 774, 823, 871
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 4 cut(s) 10, 243, 331, 715
BspMI ACCTGC 1 cut(s) 464
BspQI GCTCTTC 1 cut(s) 890
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 152, 193
BssECI CCNNGG 2 cut(s) 567, 801
BssMI GATC 4 cut(s) 16, 180, 390, 589
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 2 cut(s) 347, 375
Bst4CI ACNGT 4 cut(s) 54, 103, 144, 283
Bst6I CTCTTC 1 cut(s) 890
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 138
BstDEI CTNAG 5 cut(s) 384, 756, 782, 810, 879
BstDSI CCRYGG 1 cut(s) 567
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 2 cut(s) 204, 731
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 4 cut(s) 19, 183, 393, 592
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 4 cut(s) 16, 180, 390, 589
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 210, 359, 479, 653
BstNI CCWGG 2 cut(s) 347, 375
BstNSI RCATGY 1 cut(s) 710
BstPAI GACNNNNGTC 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 345, 373
BstV1I GCAGC 3 cut(s) 201, 349, 808
BstV2I GAAGAC 2 cut(s) 274, 675
BstZI CGGCCG 1 cut(s) 304
BsuRI GGCC 3 cut(s) 306, 634, 869
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 204, 731
BtsI GCAGTG 2 cut(s) 642, 895
BtsIMutI CAGTG 6 cut(s) 12, 99, 200, 400, 642, 895
BveI ACCTGC 1 cut(s) 464
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 5 cut(s) 145, 171, 552, 679, 786
CviAII CATG 4 cut(s) 506, 614, 707, 910
CviQI GTAC 5 cut(s) 145, 171, 552, 679, 786
DdeI CTNAG 5 cut(s) 384, 756, 782, 810, 879
DpnI GATC 4 cut(s) 18, 182, 392, 591
DpnII GATC 4 cut(s) 16, 180, 390, 589
DraIII CACNNNGTG 2 cut(s) 316, 794
EaeI YGGCCR 1 cut(s) 304
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Ecl136II GAGCTC 1 cut(s) 883
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 81
Eco52I CGGCCG 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 883
Eco91I GGTNACC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 883
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 345, 373
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 4 cut(s) 509, 617, 710, 913
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 4 cut(s) 176, 337, 516, 717
FatI CATG 4 cut(s) 505, 613, 706, 909
FbaI TGATCA 2 cut(s) 16, 589
Fnu4HI GCNGC 5 cut(s) 190, 338, 351, 408, 822
FokI GGATG 2 cut(s) 211, 738
FriOI GRGCYC 1 cut(s) 885
Fsp4HI GCNGC 5 cut(s) 190, 338, 351, 408, 822
FspBI CTAG 1 cut(s) 919
GlaI GCGC 1 cut(s) 354
GluI GCNGC 5 cut(s) 190, 338, 351, 408, 822
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 3 cut(s) 306, 634, 869
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 355
Hin1II CATG 4 cut(s) 509, 617, 710, 913
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 605
HpaII CCGG 1 cut(s) 186
HphI GGTGA 7 cut(s) 84, 134, 190, 211, 488, 538, 583
Hpy166II GTNNAC 3 cut(s) 301, 529, 788
Hpy188I TCNGA 4 cut(s) 21, 279, 561, 880
Hpy188III TCNNGA 5 cut(s) 113, 431, 614, 662, 736
Hpy8I GTNNAC 3 cut(s) 301, 529, 788
HpyAV CCTTC 2 cut(s) 493, 733
HpyCH4III ACNGT 4 cut(s) 54, 103, 144, 283
HpyCH4V TGCA 4 cut(s) 35, 824, 864, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 359, 479, 653
HpyF3I CTNAG 5 cut(s) 384, 756, 782, 810, 879
Hsp92II CATG 4 cut(s) 509, 617, 710, 913
HspAI GCGC 1 cut(s) 353
Ksp22I TGATCA 2 cut(s) 16, 589
Kzo9I GATC 4 cut(s) 16, 180, 390, 589
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 4 cut(s) 241, 335, 415, 661
Lsp1109I GCAGC 3 cut(s) 201, 349, 808
LweI GCATC 1 cut(s) 469
MaeI CTAG 1 cut(s) 919
MaeIII GTNAC 2 cut(s) 122, 308
MalI GATC 4 cut(s) 18, 182, 392, 591
MbiI CCGCTC 1 cut(s) 410
MboI GATC 4 cut(s) 16, 180, 390, 589
MboII GAAGA 4 cut(s) 279, 680, 772, 877
MhlI GDGCHC 2 cut(s) 885, 897
MluCI AATT 3 cut(s) 248, 770, 859
MnlI CCTC 6 cut(s) 116, 247, 514, 645, 669, 917
MseI TTAA 1 cut(s) 830
MslI CAYNNNNRTG 2 cut(s) 317, 521
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 347, 375
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 2 cut(s) 347, 375
MwoI GCNNNNNNNGC 4 cut(s) 210, 359, 479, 653
NdeII GATC 4 cut(s) 16, 180, 390, 589
NlaIII CATG 4 cut(s) 509, 617, 710, 913
NlaIV GGNNCC 4 cut(s) 10, 243, 331, 715
NmuCI GTSAC 2 cut(s) 122, 308
NspI RCATGY 1 cut(s) 710
NspV TTCGAA 1 cut(s) 138
PagI TCATGA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 890
PctI GAATGC 1 cut(s) 295
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 5 cut(s) 191, 339, 352, 409, 823
PshAI GACNNNNGTC 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 885
Psp6I CCWGG 2 cut(s) 345, 373
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 2 cut(s) 345, 373
PspN4I GGNNCC 4 cut(s) 10, 243, 331, 715
PspPI GGNCC 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 5 cut(s) 146, 172, 553, 680, 787
RsaNI GTAC 5 cut(s) 145, 171, 552, 679, 786
RseI CAYNNNNRTG 2 cut(s) 317, 521
SacI GAGCTC 1 cut(s) 885
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 1 cut(s) 830
SatI GCNGC 5 cut(s) 190, 338, 351, 408, 822
Sau3AI GATC 4 cut(s) 16, 180, 390, 589
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 347, 375
SduI GDGCHC 2 cut(s) 885, 897
SfaNI GCATC 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 2 cut(s) 317, 521
Sse9I AATT 3 cut(s) 248, 770, 859
SsiI CCGC 3 cut(s) 260, 350, 408
SspMI CTAG 1 cut(s) 919
SstI GAGCTC 1 cut(s) 885
StyD4I CCNGG 2 cut(s) 345, 373
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 4 cut(s) 54, 103, 144, 283
TaqI TCGA 3 cut(s) 114, 138, 663
TasI AATT 3 cut(s) 248, 770, 859
TatI WGTACW 2 cut(s) 678, 785
TauI GCSGC 2 cut(s) 353, 410
Tru1I TTAA 1 cut(s) 830
Tru9I TTAA 1 cut(s) 830
TscAI CASTG 6 cut(s) 19, 106, 200, 400, 649, 902
TseFI GTSAC 2 cut(s) 122, 308
TseI GCWGC 3 cut(s) 189, 337, 821
Tsp45I GTSAC 2 cut(s) 122, 308
TspDTI ATGAA 3 cut(s) 263, 602, 681
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 6 cut(s) 19, 106, 200, 400, 649, 902
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 2 cut(s) 248, 770
XceI RCATGY 1 cut(s) 710
XspI CTAG 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.