RchiOBHm_Chr4g0433291

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007287
Physical Location & Seq
Forward (+)
57480812 .. 57482778
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40181

Sequence Viewer

Length: 1137 bp
ATGATGTTTAATGAGGATTTTGATGGCAGGGGTGACCCAACAATGTTCGAACCGTACTGGAAAAAGATGGGGGACAAGGGTACGATGGTGATCTCCGGCAGCCAGTGGATGAGCTATGTCAGCGATTTCACCAACATCTGCTTTTTTATGGAGCCAGAATTTGAGGGTGCGGTTAGAAGACTTCATCGGACGGTTGGGAATGCTGTGGTGGACGGCCGTCACATTGTGGTGGGGACAGGCTCCACGCAGCTCTACCAGGCGGCGCTGTATGCTCTCACTTCTCCTGGTGGGGCGGAGCCGATCAGTGTCGTGTCTGCCGCTCCTTACTACTCGTCATATCCAGACGAGACAGACTATCTCCGTTCAGGGCTTTACAGATGGGCAGGTGATGCGTATGCCTTTGATAAGAAGGGACATGGAGATTACATAGAGGTGGTGAACACTCCAAACAACCCAGATGGTACTAATCGGAAAGCCGTGGTGAAACACAGACCAGATGATCAAGTTCAAGGGAAGCTTATTCACGACCTTGCCTACTATTGGCCTCAATACACTGCCATTACTGCTCCTCTCGATGAAGACATTATGTACTTCACATTTTCAAAAAGCACGGGACATGCTGGTTCCCGTATTGGATGGGCTATCGTGAAGGACAAAGAGATTGCTAAGAAGATGGCTAAATTCGTAGAGCTGAGTACACTTGGTGTGTCCAAAGTTTCTCAGCACCGAGCTGCAAAGTTAATGGAAGTGATTTGTGACGGCTATCAAAATTGCAAGGCCAAAAACTGTGAGCTCTTCTTTGAGCACTGCCAGAACCTCATGGCCCAAAGGTGGGAGAGGCTGAGAGAAGTGGTCGAGCGCAGTGAAATTTTCAGTCTGCCCAAGTATCCCAAAGAGTACTGCCTCTTTTCTGGAGAATTCAATGAACCACATCCAGCATTTGCGTGGTTGAAGTGCAAGGAAGACATAGACTTGGAGAAGTTTATAAGAGGATGCATCAAAGTGCAAGGAAGAACCGGGAGGAAGTTTGGGAGTGATCAAAAGTATTTAAGGCTTAGCATGCTAAGCAAGGATGAGGTTTTCGACCAGTTCTTGGAGAGATTGTCAACTATTAAAGCCATTAGTAATGGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

378

Amino Acids

43.13

Weight (kDa)

6.76

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 10 - 371 3.6e-136 Allinase
Aminotran_1_2 PF00155 51 - 368 5.6e-10 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 1093
AccBSI CCGCTC 1 cut(s) 320
AciI CCGC 4 cut(s) 170, 260, 293, 318
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 4 cut(s) 158, 680, 867, 917
AdeI CACNNNGTG 2 cut(s) 226, 704
AfaI GTAC 6 cut(s) 56, 82, 463, 590, 697, 899
AfiI CCNNNNNNNGG 4 cut(s) 540, 831, 832, 1093
AgsI TTSAA 4 cut(s) 509, 603, 922, 952
AjnI CCWGG 2 cut(s) 255, 283
AluBI AGCT 6 cut(s) 114, 250, 517, 691, 731, 793
AluI AGCT 6 cut(s) 114, 250, 517, 691, 731, 793
Alw21I GWGCWC 2 cut(s) 795, 807
Alw26I GTCTC 1 cut(s) 341
AoxI GGCC 4 cut(s) 214, 542, 777, 822
ApeKI GCWGC 3 cut(s) 99, 247, 731
ApoI RAATTY 4 cut(s) 158, 680, 867, 917
AspLEI GCGC 2 cut(s) 265, 861
AspS9I GGNCC 1 cut(s) 823
AsuC2I CCSGG 1 cut(s) 1018
AsuHPI GGTGA 6 cut(s) 44, 100, 121, 398, 448, 493
AsuII TTCGAA 1 cut(s) 48
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 3 cut(s) 184, 585, 969
Bbv12I GWGCWC 2 cut(s) 795, 807
BbvI GCAGC 3 cut(s) 111, 259, 718
BccI CCATC 7 cut(s) 17, 61, 79, 372, 452, 630, 667
BceAI ACGGC 4 cut(s) 201, 229, 461, 775
BciT130I CCWGG 2 cut(s) 257, 285
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 2 cut(s) 499, 1036
BcnI CCSGG 1 cut(s) 1018
BcoDI GTCTC 1 cut(s) 341
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 374
BfuI GTATCC 1 cut(s) 897
BisI GCNGC 5 cut(s) 100, 248, 261, 318, 732
BlpI GCTNAGC 2 cut(s) 1055, 1064
BlsI GCNGC 5 cut(s) 101, 249, 262, 319, 733
BmcAI AGTACT 1 cut(s) 899
Bme1390I CCNGG 3 cut(s) 257, 285, 1018
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 4 cut(s) 153, 241, 297, 625
BmrFI CCNGG 3 cut(s) 257, 285, 1018
BmsI GCATC 3 cut(s) 379, 983, 1005
BoxI GACNNNNGTC 1 cut(s) 216
BpiI GAAGAC 3 cut(s) 184, 585, 969
BpmI CTGGAG 1 cut(s) 933
Bpu1102I GCTNAGC 2 cut(s) 1055, 1064
Bpu14I TTCGAA 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 1018
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 1088, 1118
Bsc4I CCNNNNNNNGG 4 cut(s) 540, 831, 832, 1093
Bse1I ACTGG 3 cut(s) 62, 103, 1087
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 257, 285
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 5 cut(s) 114, 641, 931, 998, 1078
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 4 cut(s) 540, 831, 832, 1093
BseMII CTCAG 3 cut(s) 683, 734, 833
BseNI ACTGG 3 cut(s) 62, 103, 1087
BseRI GAGGAG 1 cut(s) 558
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 3 cut(s) 111, 259, 718
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 4 cut(s) 216, 544, 779, 824
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 2 cut(s) 795, 807
BsiSI CCGG 2 cut(s) 96, 1017
BslFI GGGAC 4 cut(s) 86, 247, 426, 627
BslI CCNNNNNNNGG 4 cut(s) 540, 831, 832, 1093
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 4 cut(s) 86, 247, 426, 627
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 4 cut(s) 216, 544, 779, 824
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 795, 807
Bsp143I GATC 4 cut(s) 90, 300, 499, 1036
Bsp1720I GCTNAGC 2 cut(s) 1055, 1064
BspACI CCGC 4 cut(s) 170, 260, 293, 318
BspANI GGCC 4 cut(s) 216, 544, 779, 824
BspCNI CTCAG 3 cut(s) 684, 733, 834
BspLI GGNNCC 4 cut(s) 153, 241, 297, 625
BspMI ACCTGC 1 cut(s) 374
BspQI GCTCTTC 1 cut(s) 800
BspT104I TTCGAA 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 320
BsrI ACTGG 3 cut(s) 62, 103, 1087
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 4 cut(s) 90, 300, 499, 1036
Bst2UI CCWGG 2 cut(s) 257, 285
Bst4CI ACNGT 3 cut(s) 54, 193, 788
Bst6I CTCTTC 1 cut(s) 800
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 1061
BstDEI CTNAG 6 cut(s) 666, 692, 720, 842, 1055, 1064
BstDSI CCRYGG 1 cut(s) 477
BstEII GGTNACC 1 cut(s) 32
BstF5I GGATG 5 cut(s) 114, 641, 931, 998, 1078
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 265, 861
BstKTI GATC 4 cut(s) 93, 303, 502, 1039
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 4 cut(s) 90, 300, 499, 1036
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 6 cut(s) 120, 269, 389, 563, 1060, 1065
BstNI CCWGG 2 cut(s) 257, 285
BstNSI RCATGY 2 cut(s) 620, 1063
BstPAI GACNNNNGTC 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 3 cut(s) 255, 283, 1016
BstV1I GCAGC 3 cut(s) 111, 259, 718
BstV2I GAAGAC 3 cut(s) 184, 585, 969
BstZI CGGCCG 1 cut(s) 214
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 4 cut(s) 216, 544, 779, 824
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 5 cut(s) 114, 641, 931, 998, 1078
BtsI GCAGTG 3 cut(s) 552, 805, 868
BtsIMutI CAGTG 5 cut(s) 110, 310, 552, 805, 868
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 1061
CfoI GCGC 2 cut(s) 265, 861
Cfr13I GGNCC 1 cut(s) 823
Csp6I GTAC 6 cut(s) 55, 81, 462, 589, 696, 898
CviAII CATG 4 cut(s) 416, 617, 820, 1060
CviQI GTAC 6 cut(s) 55, 81, 462, 589, 696, 898
DdeI CTNAG 6 cut(s) 666, 692, 720, 842, 1055, 1064
DpnI GATC 4 cut(s) 92, 302, 501, 1038
DpnII GATC 4 cut(s) 90, 300, 499, 1036
DraIII CACNNNGTG 2 cut(s) 226, 704
EaeI YGGCCR 1 cut(s) 214
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
EciI GGCGGA 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 793
EclXI CGGCCG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 795
Eco52I CGGCCG 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 793
Eco91I GGTNACC 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 793
EcoO65I GGTNACC 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 917
EcoRII CCWGG 2 cut(s) 255, 283
EcoT22I ATGCAT 1 cut(s) 998
EcoT38I GRGCYC 1 cut(s) 795
FaeI CATG 4 cut(s) 419, 620, 823, 1063
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 4 cut(s) 86, 247, 426, 627
FatI CATG 4 cut(s) 415, 616, 819, 1059
FbaI TGATCA 2 cut(s) 499, 1036
Fnu4HI GCNGC 5 cut(s) 100, 248, 261, 318, 732
FokI GGATG 5 cut(s) 121, 648, 918, 1005, 1085
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 5 cut(s) 100, 248, 261, 318, 732
GlaI GCGC 2 cut(s) 264, 860
GluI GCNGC 5 cut(s) 100, 248, 261, 318, 732
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 4 cut(s) 216, 544, 779, 824
HapII CCGG 2 cut(s) 96, 1017
HhaI GCGC 2 cut(s) 265, 861
Hin1II CATG 4 cut(s) 419, 620, 823, 1063
Hin6I GCGC 2 cut(s) 263, 859
HinP1I GCGC 2 cut(s) 263, 859
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HindIII AAGCTT 1 cut(s) 515
HpaII CCGG 2 cut(s) 96, 1017
HphI GGTGA 6 cut(s) 44, 100, 121, 398, 448, 493
Hpy166II GTNNAC 4 cut(s) 211, 439, 698, 1107
Hpy188I TCNGA 2 cut(s) 189, 471
Hpy188III TCNNGA 5 cut(s) 341, 524, 572, 646, 912
Hpy8I GTNNAC 4 cut(s) 211, 439, 698, 1107
HpyAV CCTTC 2 cut(s) 403, 643
HpyCH4III ACNGT 3 cut(s) 54, 193, 788
HpyCH4V TGCA 5 cut(s) 734, 774, 957, 996, 1006
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 269, 389, 563, 1060, 1065
HpyF3I CTNAG 6 cut(s) 666, 692, 720, 842, 1055, 1064
Hsp92II CATG 4 cut(s) 419, 620, 823, 1063
HspAI GCGC 2 cut(s) 263, 859
Ksp22I TGATCA 2 cut(s) 499, 1036
Kzo9I GATC 4 cut(s) 90, 300, 499, 1036
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 5 cut(s) 151, 245, 295, 325, 571
Lsp1109I GCAGC 3 cut(s) 111, 259, 718
LweI GCATC 3 cut(s) 379, 983, 1005
MaeIII GTNAC 3 cut(s) 32, 218, 755
MalI GATC 4 cut(s) 92, 302, 501, 1038
MbiI CCGCTC 1 cut(s) 320
MboI GATC 4 cut(s) 90, 300, 499, 1036
MboII GAAGA 6 cut(s) 189, 590, 682, 787, 974, 1023
MhlI GDGCHC 2 cut(s) 795, 807
MluCI AATT 5 cut(s) 158, 680, 769, 867, 917
Mph1103I ATGCAT 1 cut(s) 998
MseI TTAA 5 cut(s) 9, 740, 1049, 1113, 1135
MslI CAYNNNNRTG 4 cut(s) 227, 431, 943, 1001
MspI CCGG 2 cut(s) 96, 1017
MspR9I CCNGG 3 cut(s) 257, 285, 1018
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 2 cut(s) 257, 285
MwoI GCNNNNNNNGC 6 cut(s) 120, 269, 389, 563, 1060, 1065
NciI CCSGG 1 cut(s) 1018
NdeII GATC 4 cut(s) 90, 300, 499, 1036
NlaIII CATG 4 cut(s) 419, 620, 823, 1063
NlaIV GGNNCC 4 cut(s) 153, 241, 297, 625
NmuCI GTSAC 3 cut(s) 32, 218, 755
NsiI ATGCAT 1 cut(s) 998
NspI RCATGY 2 cut(s) 620, 1063
NspV TTCGAA 1 cut(s) 48
PaeI GCATGC 1 cut(s) 1063
PaqCI CACCTGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 800
PctI GAATGC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 1093
PkrI GCNGC 5 cut(s) 101, 249, 262, 319, 733
PshAI GACNNNNGTC 1 cut(s) 216
PsiI TTATAA 1 cut(s) 986
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 255, 283
PspEI GGTNACC 1 cut(s) 32
PspGI CCWGG 2 cut(s) 255, 283
PspN4I GGNNCC 4 cut(s) 153, 241, 297, 625
PspPI GGNCC 1 cut(s) 823
RsaI GTAC 6 cut(s) 56, 82, 463, 590, 697, 899
RsaNI GTAC 6 cut(s) 55, 81, 462, 589, 696, 898
RseI CAYNNNNRTG 4 cut(s) 227, 431, 943, 1001
SacI GAGCTC 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 5 cut(s) 9, 740, 1049, 1113, 1135
SatI GCNGC 5 cut(s) 100, 248, 261, 318, 732
Sau3AI GATC 4 cut(s) 90, 300, 499, 1036
Sau96I GGNCC 1 cut(s) 823
ScaI AGTACT 1 cut(s) 899
ScrFI CCNGG 3 cut(s) 257, 285, 1018
SduI GDGCHC 2 cut(s) 795, 807
SfaNI GCATC 3 cut(s) 379, 983, 1005
SfuI TTCGAA 1 cut(s) 48
SmiMI CAYNNNNRTG 4 cut(s) 227, 431, 943, 1001
SphI GCATGC 1 cut(s) 1063
Sse9I AATT 5 cut(s) 158, 680, 769, 867, 917
SsiI CCGC 4 cut(s) 170, 260, 293, 318
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 3 cut(s) 255, 283, 1016
TaaI ACNGT 3 cut(s) 54, 193, 788
TaqI TCGA 4 cut(s) 48, 573, 855, 1083
TasI AATT 5 cut(s) 158, 680, 769, 867, 917
TatI WGTACW 3 cut(s) 588, 695, 897
TauI GCSGC 2 cut(s) 263, 320
Tru1I TTAA 5 cut(s) 9, 740, 1049, 1113, 1135
Tru9I TTAA 5 cut(s) 9, 740, 1049, 1113, 1135
TscAI CASTG 5 cut(s) 110, 310, 559, 812, 868
TseFI GTSAC 3 cut(s) 32, 218, 755
TseI GCWGC 3 cut(s) 99, 247, 731
Tsp45I GTSAC 3 cut(s) 32, 218, 755
TspDTI ATGAA 3 cut(s) 173, 591, 939
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 5 cut(s) 110, 310, 559, 812, 868
Van91I CCANNNNNTGG 1 cut(s) 1093
XapI RAATTY 4 cut(s) 158, 680, 867, 917
XceI RCATGY 2 cut(s) 620, 1063
XcmI CCANNNNNNNNNTGG 1 cut(s) 942
ZrmI AGTACT 1 cut(s) 899
Zsp2I ATGCAT 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.