FvH4_4g25850

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007287
Physical Location & Seq
Forward (+)
27507303 .. 27510204
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25850.t1

Sequence Viewer

Length: 1224 bp
ATGTGCGGCACTGATCATAACCCTAACCCTGCAAGCCCTAACAAAACACCCTCAGCCAACGGCAATGGCACAAGAAGGTCTAGCGTTTCACCTGACACCGTCCTCAATCTCGAACAGGGTGATCCAACTGTGTTTGAACCGTACTGGAAAAAGATGGGGGACAAGTGCACAATGGTGATCTCCGGTGGCCAGTGGATGAGCTATGTGAGCGATTTCACCAACATCTGCTTCTTTTTGGAGCCAGAATTTGAGGATGCGGTTAGAAGACTTCACCGGACGGTTGGGAATGCGGTGGTGGACGGTCATTACATTGTGGTGGGGACAGGCTCCACGCAGCTCTACCAGGCGGCGCTGTATGCTCTCACTTCTCCTGGTGGGGCTGAGCCGATCAGTGTCGTGTCTGCCGCTCCTTACTACTCGTCATATCCAGATGAGACAGACTATCTCCGTTCAGGGCTTTACAGATGGGCAGGTGATGCATATGCCTTTGATAAGAAGGGACATGGAGATTACATTGAGGTGGTGAACACTCCAAACAACCCAGATGGTACTAATCGGAAAGCCGTGGTGAAAAACCGACCAGATGATCAAGTTCAAGGGAAGCTTATTCATGACCTTGCCTACTATTGGCCTCAGTACACTCCCATTACTGCTCCTGTCGATGAAGACATTATGTACTTCACGTTTTCGAAAAGCACCGGACATGCTGGTTCCCGTATTGGATGGGCTATTGTGAAGGACAAAGAGGTTGCTAAGAAGATGGCTAAATTCGTAGAGCTGAGTTCGCTTGGTGTGTCCAAGGACTCTCAGCACCGAGCTGCAAAGATAATGGGAGTGATCTGTGATGGCTATCAGAACTGCAAGGCCAAAAACCCTGAGCTATTCTTTGAGCACTGCCAGAATCTCATGACTGAAAGGTGGGAGAGGCTGAGAGAAGTGGTCGAGCGTATTGACATTTTCAGTCTGCCCAAGTATCCGAAAGAGTACTGCCTCTTTTCTGGAGAATTCAATGAACCACATCCAGCATTTGCGTGGTTGAAGTGCAAGGAAGACATAGACTTGGAGAAGTTTATAAGAGGATGCATCAAAGTGCAAGGAAGAACTGGGAGGAAGTTTGGGACTGATCAAAATTATCTAAGGATCAGCATGCTGAGCAAGGATGAGGTTTTCGACCACTTCTTGGAGAGATTGTCAACTATTAAAGCCATCAGTAATGGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

408

Amino Acids

45.89

Weight (kDa)

6.43

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 36 - 400 4.7e-138 Allinase
Aminotran_1_2 PF00155 80 - 397 5e-11 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1073
AarI CACCTGC 1 cut(s) 461
Acc36I ACCTGC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 1180
AccBSI CCGCTC 1 cut(s) 407
AciI CCGC 5 cut(s) 6, 257, 290, 347, 405
AclWI GGATC 2 cut(s) 116, 1148
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 3 cut(s) 245, 767, 1004
AfaI GTAC 5 cut(s) 143, 550, 638, 677, 986
AfiI CCNNNNNNNGG 2 cut(s) 627, 1180
AgsI TTSAA 4 cut(s) 137, 596, 1009, 1039
AjnI CCWGG 2 cut(s) 342, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 6 cut(s) 201, 337, 604, 778, 818, 880
AluI AGCT 6 cut(s) 201, 337, 604, 778, 818, 880
Alw21I GWGCWC 2 cut(s) 170, 894
Alw26I GTCTC 1 cut(s) 428
Alw44I GTGCAC 1 cut(s) 166
AlwI GGATC 2 cut(s) 116, 1148
AoxI GGCC 3 cut(s) 187, 629, 864
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 334, 818
ApoI RAATTY 3 cut(s) 245, 767, 1004
AspLEI GCGC 1 cut(s) 352
AsuHPI GGTGA 8 cut(s) 81, 131, 187, 208, 263, 485, 535, 580
AsuII TTCGAA 1 cut(s) 689
BaeGI GKGCMC 2 cut(s) 170, 1221
BalI TGGCCA 1 cut(s) 189
BbsI GAAGAC 3 cut(s) 271, 672, 1056
Bbv12I GWGCWC 2 cut(s) 170, 894
BbvCI CCTCAGC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 346, 805
BccI CCATC 7 cut(s) 148, 459, 539, 717, 754, 839, 1214
BceAI ACGGC 2 cut(s) 76, 548
BciT130I CCWGG 2 cut(s) 344, 372
BciVI GTATCC 1 cut(s) 984
BclI TGATCA 3 cut(s) 13, 586, 1123
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 461
BfuI GTATCC 1 cut(s) 984
BisI GCNGC 5 cut(s) 7, 335, 348, 405, 819
BlpI GCTNAGC 2 cut(s) 381, 1151
BlsI GCNGC 5 cut(s) 8, 336, 349, 406, 820
BmcAI AGTACT 1 cut(s) 986
Bme1390I CCNGG 2 cut(s) 344, 372
BmiI GGNNCC 3 cut(s) 240, 328, 712
BmrFI CCNGG 2 cut(s) 344, 372
BmrI ACTGGG 1 cut(s) 1113
BmsI GCATC 4 cut(s) 244, 466, 1070, 1092
BmuI ACTGGG 1 cut(s) 1113
BpiI GAAGAC 3 cut(s) 271, 672, 1056
BpmI CTGGAG 1 cut(s) 1020
Bpu10I CCTNAGC 2 cut(s) 52, 876
Bpu1102I GCTNAGC 2 cut(s) 381, 1151
Bpu14I TTCGAA 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 849
BsaJI CCNNGG 2 cut(s) 564, 798
BsaWI WCCGGW 3 cut(s) 182, 273, 698
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 2 cut(s) 627, 1180
Bse1I ACTGG 3 cut(s) 149, 190, 1108
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 849
BseBI CCWGG 2 cut(s) 344, 372
BseDI CCNNGG 2 cut(s) 564, 798
BseGI GGATG 6 cut(s) 201, 259, 728, 1018, 1085, 1165
BseJI GATNNNNATC 1 cut(s) 849
BseLI CCNNNNNNNGG 2 cut(s) 627, 1180
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 8 cut(s) 66, 372, 647, 770, 821, 867, 920, 1142
BseNI ACTGG 3 cut(s) 149, 190, 1108
BseSI GKGCMC 2 cut(s) 170, 1221
BseXI GCAGC 2 cut(s) 346, 805
BshFI GGCC 3 cut(s) 189, 631, 866
BsiHKAI GWGCWC 2 cut(s) 170, 894
BsiSI CCGG 3 cut(s) 183, 274, 699
BslFI GGGAC 4 cut(s) 173, 334, 513, 1132
BslI CCNNNNNNNGG 2 cut(s) 627, 1180
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 4 cut(s) 173, 334, 513, 1132
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 3 cut(s) 189, 631, 866
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 3 cut(s) 170, 894, 1221
Bsp143I GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
Bsp1720I GCTNAGC 2 cut(s) 381, 1151
BspACI CCGC 5 cut(s) 6, 257, 290, 347, 405
BspANI GGCC 3 cut(s) 189, 631, 866
BspCNI CTCAG 8 cut(s) 65, 373, 646, 771, 820, 868, 921, 1143
BspHI TCATGA 2 cut(s) 610, 906
BspLI GGNNCC 3 cut(s) 240, 328, 712
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 2 cut(s) 116, 1148
BspT104I TTCGAA 1 cut(s) 689
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 3 cut(s) 149, 190, 1108
BssECI CCNNGG 2 cut(s) 564, 798
BssMI GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
BssT1I CCWWGG 1 cut(s) 798
Bst2UI CCWGG 2 cut(s) 344, 372
Bst4CI ACNGT 5 cut(s) 100, 130, 141, 280, 302
BstAPI GCANNNNNTGC 1 cut(s) 476
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 2 cut(s) 34, 1148
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 6 cut(s) 201, 259, 728, 1018, 1085, 1165
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 8 cut(s) 16, 124, 180, 390, 589, 840, 1126, 1143
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
BstMWI GCNNNNNNNGC 5 cut(s) 207, 356, 476, 784, 1152
BstNI CCWGG 2 cut(s) 344, 372
BstNSI RCATGY 2 cut(s) 707, 1150
BstSCI CCNGG 2 cut(s) 342, 370
BstSLI GKGCMC 2 cut(s) 170, 1221
BstV1I GCAGC 2 cut(s) 346, 805
BstV2I GAAGAC 3 cut(s) 271, 672, 1056
BsuI GTATCC 1 cut(s) 984
BsuRI GGCC 3 cut(s) 189, 631, 866
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 6 cut(s) 201, 259, 728, 1018, 1085, 1165
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 4 cut(s) 9, 197, 397, 892
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 2 cut(s) 34, 1148
CciI TCATGA 2 cut(s) 610, 906
CfoI GCGC 1 cut(s) 352
Csp6I GTAC 5 cut(s) 142, 549, 637, 676, 985
CviAII CATG 5 cut(s) 503, 611, 704, 907, 1147
CviQI GTAC 5 cut(s) 142, 549, 637, 676, 985
DpnI GATC 8 cut(s) 15, 123, 179, 389, 588, 839, 1125, 1142
DpnII GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
EaeI YGGCCR 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 798
EcoRI GAATTC 1 cut(s) 1004
EcoRII CCWGG 2 cut(s) 342, 370
EcoT14I CCWWGG 1 cut(s) 798
EcoT22I ATGCAT 2 cut(s) 481, 1085
ErhI CCWWGG 1 cut(s) 798
FaeI CATG 5 cut(s) 506, 614, 707, 910, 1150
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 4 cut(s) 173, 334, 513, 1132
FatI CATG 5 cut(s) 502, 610, 703, 906, 1146
FauNDI CATATG 1 cut(s) 481
FbaI TGATCA 3 cut(s) 13, 586, 1123
Fnu4HI GCNGC 5 cut(s) 7, 335, 348, 405, 819
FokI GGATG 6 cut(s) 208, 266, 735, 1005, 1092, 1172
Fsp4HI GCNGC 5 cut(s) 7, 335, 348, 405, 819
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 351
GluI GCNGC 5 cut(s) 7, 335, 348, 405, 819
GsuI CTGGAG 1 cut(s) 1020
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 3 cut(s) 189, 631, 866
HapII CCGG 3 cut(s) 183, 274, 699
HhaI GCGC 1 cut(s) 352
Hin1II CATG 5 cut(s) 506, 614, 707, 910, 1150
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 1 cut(s) 1194
HindII GTYRAC 1 cut(s) 1194
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 2 cut(s) 803, 901
HpaII CCGG 3 cut(s) 183, 274, 699
HphI GGTGA 8 cut(s) 81, 131, 187, 208, 263, 485, 535, 580
Hpy166II GTNNAC 5 cut(s) 168, 298, 526, 639, 1194
Hpy188I TCNGA 3 cut(s) 558, 855, 978
Hpy188III TCNNGA 5 cut(s) 110, 428, 611, 907, 999
Hpy8I GTNNAC 5 cut(s) 168, 298, 526, 639, 1194
HpyAV CCTTC 3 cut(s) 69, 490, 730
HpyCH4III ACNGT 5 cut(s) 100, 130, 141, 280, 302
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 8 cut(s) 32, 168, 479, 821, 861, 1044, 1083, 1093
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 356, 476, 784, 1152
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 5 cut(s) 506, 614, 707, 910, 1150
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 3 cut(s) 13, 586, 1123
Kzo9I GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
LmnI GCTCC 4 cut(s) 238, 332, 412, 658
Lsp1109I GCAGC 2 cut(s) 346, 805
LweI GCATC 4 cut(s) 244, 466, 1070, 1092
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 683
MalI GATC 8 cut(s) 15, 123, 179, 389, 588, 839, 1125, 1142
MbiI CCGCTC 1 cut(s) 407
MboI GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
MboII GAAGA 5 cut(s) 276, 677, 769, 1061, 1110
MhlI GDGCHC 3 cut(s) 170, 894, 1221
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 4 cut(s) 245, 767, 1004, 1129
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 149
Mox20I TGGCCA 1 cut(s) 189
Mph1103I ATGCAT 2 cut(s) 481, 1085
MscI TGGCCA 1 cut(s) 189
MseI TTAA 1 cut(s) 1200
MslI CAYNNNNRTG 5 cut(s) 173, 314, 518, 1030, 1088
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 3 cut(s) 183, 274, 699
MspR9I CCNGG 2 cut(s) 344, 372
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 344, 372
MwoI GCNNNNNNNGC 5 cut(s) 207, 356, 476, 784, 1152
NdeI CATATG 1 cut(s) 481
NdeII GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
NlaIII CATG 5 cut(s) 506, 614, 707, 910, 1150
NlaIV GGNNCC 3 cut(s) 240, 328, 712
NsiI ATGCAT 2 cut(s) 481, 1085
NspI RCATGY 2 cut(s) 707, 1150
NspV TTCGAA 1 cut(s) 689
OliI CACNNNNGTG 1 cut(s) 173
PaeI GCATGC 1 cut(s) 1150
PagI TCATGA 2 cut(s) 610, 906
PaqCI CACCTGC 1 cut(s) 461
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 901
PflFI GACNNNGTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 1180
PkrI GCNGC 5 cut(s) 8, 336, 349, 406, 820
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PsiI TTATAA 1 cut(s) 1073
Psp6I CCWGG 2 cut(s) 342, 370
PspGI CCWGG 2 cut(s) 342, 370
PspN4I GGNNCC 3 cut(s) 240, 328, 712
PsyI GACNNNGTC 1 cut(s) 98
RsaI GTAC 5 cut(s) 143, 550, 638, 677, 986
RsaNI GTAC 5 cut(s) 142, 549, 637, 676, 985
RseI CAYNNNNRTG 5 cut(s) 173, 314, 518, 1030, 1088
SaqAI TTAA 1 cut(s) 1200
SatI GCNGC 5 cut(s) 7, 335, 348, 405, 819
Sau3AI GATC 8 cut(s) 13, 121, 177, 387, 586, 837, 1123, 1140
ScaI AGTACT 1 cut(s) 986
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 2 cut(s) 344, 372
SduI GDGCHC 3 cut(s) 170, 894, 1221
SfaNI GCATC 4 cut(s) 244, 466, 1070, 1092
SfuI TTCGAA 1 cut(s) 689
SmiMI CAYNNNNRTG 5 cut(s) 173, 314, 518, 1030, 1088
SphI GCATGC 1 cut(s) 1150
Sse9I AATT 4 cut(s) 245, 767, 1004, 1129
SsiI CCGC 5 cut(s) 6, 257, 290, 347, 405
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 342, 370
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 5 cut(s) 100, 130, 141, 280, 302
TaiI ACGT 1 cut(s) 686
TaqI TCGA 5 cut(s) 111, 660, 689, 942, 1170
TasI AATT 4 cut(s) 245, 767, 1004, 1129
TatI WGTACW 3 cut(s) 636, 675, 984
TauI GCSGC 3 cut(s) 9, 350, 407
TfiI GAWTC 1 cut(s) 901
Tru1I TTAA 1 cut(s) 1200
Tru9I TTAA 1 cut(s) 1200
TscAI CASTG 4 cut(s) 16, 197, 397, 899
TseI GCWGC 2 cut(s) 334, 818
TspDTI ATGAA 3 cut(s) 599, 678, 1026
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 4 cut(s) 16, 197, 397, 899
Tth111I GACNNNGTC 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 1180
VneI GTGCAC 1 cut(s) 166
XapI RAATTY 3 cut(s) 245, 767, 1004
XceI RCATGY 2 cut(s) 707, 1150
XcmI CCANNNNNNNNNTGG 1 cut(s) 1029
XspI CTAG 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 986
Zsp2I ATGCAT 2 cut(s) 481, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.