Rh4CG345200

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007287
Physical Location & Seq
Forward (+)
60452724 .. 60453135
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG345200.1

Sequence Viewer

Length: 318 bp
ATGGCTCAAAGATGGGAGAGGCTGAGAGAAGTGGTCGAGCGCAGTGAAATTTTCAGTCTGCCCAAGTATCCCAAAGAGTACTGCCTCTTTTCTGGAGAATTCAATGAATCACATCCAGCATTTGCGTGGTTGAAGTGCAAGGAAGACATAGACTTGGAGAAGTTTATAAGAGGATGCATCAAAGTGCAAGGAAGAACAGGGAGGAAGTTTGGGAGTGATCAAAAGTATTTAAGGCTTAGCATGCTGAGCAAGGATGAGGTTTTCGACCAGTTCTTGGAGAGATTGTCAACTATTAAAGCCATTAGTAATGGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

105

Amino Acids

12.46

Weight (kDa)

8.81

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 1 - 98 1.2e-28 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 274
AcsI RAATTY 2 cut(s) 48, 98
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 103, 133
ApoI RAATTY 2 cut(s) 48, 98
AspLEI GCGC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 1 cut(s) 6
BciVI GTATCC 1 cut(s) 78
BclI TGATCA 1 cut(s) 217
BfuI GTATCC 1 cut(s) 78
BlpI GCTNAGC 2 cut(s) 236, 245
BmcAI AGTACT 1 cut(s) 80
BmsI GCATC 2 cut(s) 164, 186
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 114
Bpu1102I GCTNAGC 2 cut(s) 236, 245
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 268
BseGI GGATG 3 cut(s) 112, 179, 259
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 14, 236
BseNI ACTGG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 274
Bsp143I GATC 1 cut(s) 217
Bsp1720I GCTNAGC 2 cut(s) 236, 245
BspCNI CTCAG 2 cut(s) 15, 237
BsrI ACTGG 1 cut(s) 268
BssMI GATC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 23, 236, 245
BstF5I GGATG 3 cut(s) 112, 179, 259
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 241, 246
BstNSI RCATGY 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 150
BsuI GTATCC 1 cut(s) 78
BtsCI GGATG 3 cut(s) 112, 179, 259
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 242
CfoI GCGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 241
CviJI RGCY 4 cut(s) 5, 22, 235, 299
CviKI_1 RGCY 4 cut(s) 5, 22, 235, 299
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 3 cut(s) 23, 236, 245
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 179
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 149, 167, 242
FatI CATG 1 cut(s) 240
FbaI TGATCA 1 cut(s) 217
FokI GGATG 3 cut(s) 99, 186, 266
GlaI GCGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 114
HhaI GCGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 138, 177, 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 246
HpyF3I CTNAG 3 cut(s) 23, 236, 245
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 78, 129, 183, 281
LweI GCATC 2 cut(s) 164, 186
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 155, 204
MluCI AATT 2 cut(s) 48, 98
MnlI CCTC 5 cut(s) 12, 95, 164, 195, 250
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 3 cut(s) 230, 294, 316
MslI CAYNNNNRTG 2 cut(s) 124, 182
MwoI GCNNNNNNNGC 2 cut(s) 241, 246
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 1 cut(s) 244
PaeI GCATGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 274
PsiI TTATAA 1 cut(s) 167
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 2 cut(s) 124, 182
SaqAI TTAA 3 cut(s) 230, 294, 316
Sau3AI GATC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 80
SetI ASST 1 cut(s) 261
SfaNI GCATC 2 cut(s) 164, 186
SmiMI CAYNNNNRTG 2 cut(s) 124, 182
SphI GCATGC 1 cut(s) 244
Sse9I AATT 2 cut(s) 48, 98
TaqI TCGA 2 cut(s) 36, 264
TasI AATT 2 cut(s) 48, 98
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 230, 294, 316
Tru9I TTAA 3 cut(s) 230, 294, 316
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 2 cut(s) 48, 98
XceI RCATGY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.