AT1G70560

aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007287
Physical Location & Seq
Forward (+)
26604855 .. 26607652
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70560.1

Sequence Viewer

Length: 1176 bp
ATGGTGAAACTGGAGAACTCGAGGAAACCCGAAAAAATTTCGAACAAGAACATCCCCATGTCCGATTTCGTGGTCAATCTGGATCATGGTGATCCAACGGCGTACGAAGAATACTGGAGGAAGATGGGTGACAGGTGTACGGTGACGATACGTGGTTGTGATCTCATGAGTTACTTCAGCGACATGACGAACTTGTGTTGGTTCCTTGAGCCAGAGCTTGAAGATGCGATCAAGGACTTGCACGGTGTTGTTGGTAACGCTGCGACGGAGGATCGGTACATAGTGGTTGGGACCGGTTCGACGCAGCTTTGTCAAGCCGCCGTCCACGCACTCTCTTCACTAGCCAGGAGTCAACCTGTCAGCGTCGTCGCCGCCGCTCCTTTTTACTCCACATATGTGGAGGAGACGACATATGTTCGGTCGGGTATGTACAAGTGGGAAGGAGACGCATGGGGTTTCGACAAAAAGGGTCCGTACATCGAGCTAGTGACGTCACCTAATAACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCAGACGACGACGAAGCCAAAGTGATCCATGACTTTGCTTATTACTGGCCCCACTACACTCCCATCACTCGCCGTCAAGACCATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCACGCTGGGTCCCGTATTGGGTGGGCATTGGTGAAGGACAAGGAGGTAGCTAAGAAGATGGTTGAGTATATTATTGTGAACTCGATTGGTGTGTCTAAGGAGTCACAGGTTCGAACAGCTAAGATACTCAACGTTCTAAAGGAGACTTGTAAGAGCGAGTCCGAGTCTGAGAATTTCTTCAAGTATGGTCGTGAGATGATGAAGAATCGGTGGGAGAAGCTACGTGAAGTTGTGAAAGAGAGCGATGCTTTCACTCTTCCCAAGTACCCTGAAGCATTTTGCAACTACTTTGGAAAATCACTCGAATCTTACCCTGCGTTTGCGTGGCTAGGGACGAAGGAAGAGACGGATCTGGTAAGTGAATTGAGGAGACACAAGGTAATGAGCAGAGCTGGAGAGCGTTGTGGATCTGACAAGAAGCATGTCCGAGTCAGCATGCTTAGTCGTGAAGACGTTTTCAATGTCTTTCTCGAGAGACTCGCCAACATGAAGCTCATTAAAAGCATTGACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

391

Amino Acids

44.8

Weight (kDa)

6.35

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 25 - 383 9.7e-170 Allinase
Aminotran_1_2 PF00155 70 - 372 9.6e-11 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 494
AccBSI CCGCTC 1 cut(s) 377
AciI CCGC 3 cut(s) 318, 372, 375
AclI AACGTT 1 cut(s) 792
AclWI GGATC 6 cut(s) 86, 90, 279, 559, 1017, 1075
AcsI RAATTY 2 cut(s) 36, 832
AcuI CTGAAG 2 cut(s) 160, 951
AcyI GRCGYC 1 cut(s) 491
AfaI GTAC 6 cut(s) 104, 139, 278, 431, 476, 926
AfiI CCNNNNNNNGG 1 cut(s) 678
AgeI ACCGGT 1 cut(s) 293
AgsI TTSAA 3 cut(s) 221, 841, 1120
AjnI CCWGG 1 cut(s) 344
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 8 cut(s) 217, 307, 484, 710, 779, 880, 1052, 1153
AluI AGCT 8 cut(s) 217, 307, 484, 710, 779, 880, 1052, 1153
Alw26I GTCTC 7 cut(s) 398, 438, 518, 797, 998, 1024, 1129
AlwI GGATC 6 cut(s) 86, 90, 279, 559, 1017, 1075
Ama87I CYCGRG 2 cut(s) 19, 1130
AoxI GGCC 2 cut(s) 587, 658
ApeKI GCWGC 2 cut(s) 260, 304
ApoI RAATTY 2 cut(s) 36, 832
AsiGI ACCGGT 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 836
AspS9I GGNCC 4 cut(s) 291, 470, 588, 669
AsuHPI GGTGA 7 cut(s) 16, 101, 140, 154, 486, 544, 703
AsuII TTCGAA 2 cut(s) 41, 772
AvaI CYCGRG 2 cut(s) 19, 1130
AvaII GGWCC 3 cut(s) 291, 470, 669
BbsI GAAGAC 1 cut(s) 1116
BbvI GCAGC 2 cut(s) 247, 316
BccI CCATC 4 cut(s) 118, 524, 611, 712
BceAI ACGGC 3 cut(s) 114, 305, 597
BciT130I CCWGG 1 cut(s) 346
BcoDI GTCTC 7 cut(s) 398, 438, 518, 797, 998, 1024, 1129
BfaI CTAG 3 cut(s) 341, 485, 989
BisI GCNGC 5 cut(s) 261, 305, 318, 372, 375
BlsI GCNGC 5 cut(s) 262, 306, 319, 373, 376
Bme1390I CCNGG 1 cut(s) 346
Bme18I GGWCC 3 cut(s) 291, 470, 669
BmeT110I CYCGRG 2 cut(s) 19, 1130
BmgT120I GGNCC 4 cut(s) 291, 470, 588, 669
BmiI GGNNCC 7 cut(s) 203, 292, 471, 514, 590, 670, 671
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 2 cut(s) 214, 895
BpiI GAAGAC 1 cut(s) 1116
BpmI CTGGAG 3 cut(s) 32, 136, 1074
Bpu14I TTCGAA 2 cut(s) 41, 772
BpuEI CTTGAG 1 cut(s) 227
BsaAI YACGTR 2 cut(s) 152, 884
BsaHI GRCGYC 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 678
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 3 cut(s) 15, 119, 590
BseBI CCWGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 3 cut(s) 15, 119, 590
BseRI GAGGAG 2 cut(s) 416, 1042
BseXI GCAGC 2 cut(s) 247, 316
BseYI CCCAGC 1 cut(s) 665
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 2 cut(s) 589, 660
BshTI ACCGGT 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 422
BsiHKCI CYCGRG 2 cut(s) 19, 1130
BsiSI CCGG 1 cut(s) 294
BsiWI CGTACG 1 cut(s) 102
BslFI GGGAC 3 cut(s) 304, 655, 1006
BslI CCNNNNNNNGG 1 cut(s) 678
BsmAI GTCTC 7 cut(s) 398, 438, 518, 797, 998, 1024, 1129
BsmBI CGTCTC 4 cut(s) 398, 438, 518, 998
BsmFI GGGAC 3 cut(s) 304, 655, 1006
BsnI GGCC 2 cut(s) 589, 660
BsoBI CYCGRG 2 cut(s) 19, 1130
Bsp119I TTCGAA 2 cut(s) 41, 772
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
BspACI CCGC 3 cut(s) 318, 372, 375
BspANI GGCC 2 cut(s) 589, 660
BspCNI CTCAG 1 cut(s) 820
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 7 cut(s) 203, 292, 471, 514, 590, 670, 671
BspPI GGATC 6 cut(s) 86, 90, 279, 559, 1017, 1075
BspQI GCTCTTC 1 cut(s) 641
BspT104I TTCGAA 2 cut(s) 41, 772
BsrBI CCGCTC 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 3 cut(s) 15, 119, 590
BssAI RCCGGY 1 cut(s) 293
BssMI GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
BssNI GRCGYC 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 4 cut(s) 142, 245, 529, 539
Bst6I CTCTTC 4 cut(s) 340, 641, 921, 996
BstACI GRCGYC 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 429
BstBAI YACGTR 2 cut(s) 152, 884
BstBI TTCGAA 2 cut(s) 41, 772
BstC8I GCNNGC 1 cut(s) 1097
BstDEI CTNAG 5 cut(s) 711, 756, 780, 828, 1100
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 9 cut(s) 85, 94, 163, 231, 274, 567, 654, 1012, 1070
BstMAI GTCTC 7 cut(s) 398, 438, 518, 797, 998, 1024, 1129
BstMBI GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 2 cut(s) 1085, 1099
BstSCI CCNGG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 247, 316
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 2 cut(s) 1009, 1067
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 2 cut(s) 1009, 1067
BsuRI GGCC 2 cut(s) 589, 660
BtgZI GCGATG 1 cut(s) 918
BtsCI GGATG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 1097
CciI TCATGA 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 291, 470, 588, 669
CseI GACGC 3 cut(s) 310, 352, 455
Csp6I GTAC 6 cut(s) 103, 138, 277, 430, 475, 925
CspAI ACCGGT 1 cut(s) 293
CviQI GTAC 6 cut(s) 103, 138, 277, 430, 475, 925
DdeI CTNAG 5 cut(s) 711, 756, 780, 828, 1100
DpnI GATC 9 cut(s) 84, 93, 162, 230, 273, 566, 653, 1011, 1069
DpnII GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
Eam1104I CTCTTC 4 cut(s) 340, 641, 921, 996
EarI CTCTTC 4 cut(s) 340, 641, 921, 996
Eco47I GGWCC 3 cut(s) 291, 470, 669
Eco57I CTGAAG 2 cut(s) 160, 951
Eco88I CYCGRG 2 cut(s) 19, 1130
EcoO109I RGGNCCY 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 344
Esp3I CGTCTC 4 cut(s) 398, 438, 518, 998
FaqI GGGAC 3 cut(s) 304, 655, 1006
FauNDI CATATG 2 cut(s) 394, 412
Fnu4HI GCNGC 5 cut(s) 261, 305, 318, 372, 375
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 5 cut(s) 261, 305, 318, 372, 375
FspBI CTAG 3 cut(s) 341, 485, 989
GluI GCNGC 5 cut(s) 261, 305, 318, 372, 375
GsaI CCCAGC 1 cut(s) 669
GsuI CTGGAG 3 cut(s) 32, 136, 1074
HaeIII GGCC 2 cut(s) 589, 660
HapII CCGG 1 cut(s) 294
HgaI GACGC 3 cut(s) 310, 352, 455
Hin1I GRCGYC 1 cut(s) 491
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 8 cut(s) 349, 761, 818, 824, 865, 965, 1089, 1137
HpaII CCGG 1 cut(s) 294
HphI GGTGA 7 cut(s) 16, 101, 140, 154, 486, 544, 703
Hpy166II GTNNAC 5 cut(s) 138, 325, 353, 535, 739
Hpy188I TCNGA 6 cut(s) 64, 521, 823, 829, 1072, 1088
Hpy188III TCNNGA 8 cut(s) 80, 166, 542, 617, 851, 1106, 1130, 1132
Hpy8I GTNNAC 5 cut(s) 138, 325, 353, 535, 739
Hpy99I CGWCG 6 cut(s) 268, 304, 368, 371, 551, 554
HpyAV CCTTC 3 cut(s) 434, 688, 991
HpyCH4III ACNGT 4 cut(s) 142, 245, 529, 539
HpyCH4IV ACGT 5 cut(s) 151, 491, 792, 883, 1113
HpyCH4V TGCA 2 cut(s) 241, 942
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 5 cut(s) 711, 756, 780, 828, 1100
HpySE526I ACGT 5 cut(s) 151, 491, 792, 883, 1113
Hsp92I GRCGYC 1 cut(s) 491
KflI GGGWCCC 1 cut(s) 669
Kzo9I GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 2 cut(s) 247, 316
LweI GCATC 2 cut(s) 214, 895
MaeI CTAG 3 cut(s) 341, 485, 989
MaeII ACGT 5 cut(s) 151, 491, 792, 883, 1113
MaeIII GTNAC 7 cut(s) 128, 142, 170, 254, 487, 492, 762
MalI GATC 9 cut(s) 84, 93, 162, 230, 273, 566, 653, 1011, 1069
MbiI CCGCTC 1 cut(s) 377
MboI GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
MflI RGATCY 2 cut(s) 1009, 1067
MluCI AATT 3 cut(s) 36, 832, 1022
MlyI GAGTC 6 cut(s) 358, 770, 827, 833, 1098, 1131
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 6 cut(s) 15, 111, 262, 394, 697, 1020
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 1 cut(s) 1158
MslI CAYNNNNRTG 2 cut(s) 56, 395
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeI CATATG 2 cut(s) 394, 412
NdeII GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
NlaIV GGNNCC 7 cut(s) 203, 292, 471, 514, 590, 670, 671
NmuCI GTSAC 5 cut(s) 128, 142, 487, 492, 762
NspI RCATGY 2 cut(s) 1085, 1099
NspV TTCGAA 2 cut(s) 41, 772
OliI CACNNNNGTG 1 cut(s) 395
PaeI GCATGC 1 cut(s) 1099
PaeR7I CTCGAG 2 cut(s) 19, 1130
PagI TCATGA 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 2 cut(s) 865, 965
Pfl23II CGTACG 1 cut(s) 102
PinAI ACCGGT 1 cut(s) 293
PkrI GCNGC 5 cut(s) 262, 306, 319, 373, 376
PleI GAGTC 6 cut(s) 357, 769, 826, 832, 1097, 1131
PpsI GAGTC 6 cut(s) 357, 769, 826, 832, 1097, 1131
Ppu21I YACGTR 2 cut(s) 152, 884
PpuMI RGGWCCY 1 cut(s) 669
Psp1406I AACGTT 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 665
PspGI CCWGG 1 cut(s) 344
PspLI CGTACG 1 cut(s) 102
PspN4I GGNNCC 7 cut(s) 203, 292, 471, 514, 590, 670, 671
PspPI GGNCC 4 cut(s) 291, 470, 588, 669
PspPPI RGGWCCY 1 cut(s) 669
PspXI VCTCGAGB 1 cut(s) 19
PsuI RGATCY 2 cut(s) 1009, 1067
RsaI GTAC 6 cut(s) 104, 139, 278, 431, 476, 926
RsaNI GTAC 6 cut(s) 103, 138, 277, 430, 475, 925
RseI CAYNNNNRTG 2 cut(s) 56, 395
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 1 cut(s) 1158
SatI GCNGC 5 cut(s) 261, 305, 318, 372, 375
Sau3AI GATC 9 cut(s) 82, 91, 160, 228, 271, 564, 651, 1009, 1067
Sau96I GGNCC 4 cut(s) 291, 470, 588, 669
SchI GAGTC 6 cut(s) 358, 770, 827, 833, 1098, 1131
ScrFI CCNGG 1 cut(s) 346
SfaNI GCATC 2 cut(s) 214, 895
Sfr274I CTCGAG 2 cut(s) 19, 1130
SfuI TTCGAA 2 cut(s) 41, 772
SinI GGWCC 3 cut(s) 291, 470, 669
SlaI CTCGAG 2 cut(s) 19, 1130
SmiMI CAYNNNNRTG 2 cut(s) 56, 395
SmlI CTYRAG 3 cut(s) 19, 206, 1130
SmoI CTYRAG 3 cut(s) 19, 206, 1130
SphI GCATGC 1 cut(s) 1099
Sse9I AATT 3 cut(s) 36, 832, 1022
SsiI CCGC 3 cut(s) 318, 372, 375
SspMI CTAG 3 cut(s) 341, 485, 989
StyD4I CCNGG 1 cut(s) 344
TaaI ACNGT 4 cut(s) 142, 245, 529, 539
TaiI ACGT 5 cut(s) 154, 494, 795, 886, 1116
TaqI TCGA 9 cut(s) 20, 41, 299, 459, 480, 743, 772, 963, 1131
TaqII GACCGA 1 cut(s) 408
TasI AATT 3 cut(s) 36, 832, 1022
TatI WGTACW 1 cut(s) 429
TauI GCSGC 3 cut(s) 320, 374, 377
TfiI GAWTC 2 cut(s) 865, 965
Tru1I TTAA 1 cut(s) 1158
Tru9I TTAA 1 cut(s) 1158
TseFI GTSAC 5 cut(s) 128, 142, 487, 492, 762
TseI GCWGC 2 cut(s) 260, 304
Tsp45I GTSAC 5 cut(s) 128, 142, 487, 492, 762
TspDTI ATGAA 2 cut(s) 875, 1163
TspGWI ACGGA 4 cut(s) 281, 462, 525, 1022
VpaK11BI GGWCC 3 cut(s) 291, 470, 669
XapI RAATTY 2 cut(s) 36, 832
XceI RCATGY 2 cut(s) 1085, 1099
XhoI CTCGAG 2 cut(s) 19, 1130
XmnI GAANNNNTTC 1 cut(s) 836
XspI CTAG 3 cut(s) 341, 485, 989
ZraI GACGTC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.