Rroxscaffold_5G00374850

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007287
Physical Location & Seq
Forward (+)
55799565 .. 55801970
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374850.1

Sequence Viewer

Length: 1125 bp
ATGTGCGGCACCACTGATCAGAACCCTAACCCTGCAACCCCTAACAAAACACCGTCAGCTAATGGCAATGGCACAACAAGGTCTAGCGTTTCACCTGACACTGTCCTCAATCTCGAACAGGGTGACCCAACAATGTTCGAACCGTACTGGAAAAAGATGGGGGACAAGGGTACGATGGTGATCTCCGGCAGCCAGTGGATGAGCTATATCAGCGATTTCACCAACATCTGCTTTTTTATGGAGCCAGAATTTGAGGGTGCGGTTAGAAGACTTCATCGGACGGTTGGGAATGCTGTGGTGGACGGCCGTCACATTGTGGTGGGGACAGGCTCCACGCAGCTCTACCAGGCGGCGCTGTATGCTCTCACTTCTCCTGGTAGGGCAGAGCCGATCAGTGTCGTGTCTGCCGCTCCTTACTACTCGTCATATCCAGACGAGACAGACTATCTCCGTTCAGGGCTTTACAGATGGGCAGGTGATGCGTATGCCTTTGATAAGAAGGGACATGGAGATTACATAGAGGTGGTGAACACTCCAAACAACCCAGATGTGCTCCTCTCGATGAAGACATTATGTACTTCACATTTTCAAAAAAGCACGGGACATGCTGGTTCCCGTATTGGATGGGCTATCGTGAAGGACAAAGAGATTGCTAAGAAGATGGCTAAATTCGTAGAGCTGAGTACACTTGGTGTGTCCAAAGTTTCTCAGCACCGAGCTGCAAAGTTAATGGGAGTGATTTGTGATGGCTATCAAAATTGCAAGGCCAAAAACCCTGAGCTCTTCTTTGAGCATTGCCAGAACCTCATGGCTCAAAGGTGGGAGAGGCTGAGAGAAGTGGTCGAGCGCAGTGAAATTTTAAGTCTGCCCAAGTATCCCAAAGAGTACTGCCTCTTTTCTAGAGAATTCAATGAACCACATCCAGCATTTGCGTGGTTGAAGTGCAAGGAAGACATAGACTTGGAGAAGTTTATAAGAGGATGCATCAGAGTGCAAGGAAGAACCGGGAGGAAGTTTGGGAGTGATCAAAAGTATTTAAGGCTTAGCATGCTGAGCGAGGATGGGGTTTTCGACCAGTTCTTGGAGAGATTGTCAAATATTAAAGCCATTAGTAATGGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

374

Amino Acids

42.05

Weight (kDa)

8.44

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 37 - 189 1.3e-54 Allinase
Alliinase_C PF04864 196 - 367 3.7e-54 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AarI CACCTGC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 1081
AccBSI CCGCTC 1 cut(s) 410
AciI CCGC 4 cut(s) 6, 260, 350, 408
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 4 cut(s) 248, 668, 855, 905
AdeI CACNNNGTG 2 cut(s) 316, 692
AfaI GTAC 5 cut(s) 146, 172, 577, 685, 887
AfiI CCNNNNNNNGG 1 cut(s) 1081
AgsI TTSAA 3 cut(s) 590, 910, 940
AjnI CCWGG 2 cut(s) 345, 373
AluBI AGCT 6 cut(s) 59, 204, 340, 679, 719, 781
AluI AGCT 6 cut(s) 59, 204, 340, 679, 719, 781
Alw21I GWGCWC 2 cut(s) 555, 783
Alw26I GTCTC 1 cut(s) 431
AoxI GGCC 2 cut(s) 304, 765
ApeKI GCWGC 3 cut(s) 189, 337, 719
ApoI RAATTY 4 cut(s) 248, 668, 855, 905
AspLEI GCGC 2 cut(s) 355, 849
AsuC2I CCSGG 1 cut(s) 1006
AsuHPI GGTGA 6 cut(s) 84, 134, 190, 211, 488, 538
AsuII TTCGAA 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 783
BbsI GAAGAC 3 cut(s) 274, 572, 957
Bbv12I GWGCWC 2 cut(s) 555, 783
BbvI GCAGC 3 cut(s) 201, 349, 706
BccI CCATC 7 cut(s) 151, 169, 462, 618, 655, 740, 1055
BceAI ACGGC 2 cut(s) 291, 319
BciT130I CCWGG 2 cut(s) 347, 375
BciVI GTATCC 1 cut(s) 885
BclI TGATCA 2 cut(s) 16, 1024
BcnI CCSGG 1 cut(s) 1006
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 2 cut(s) 84, 900
BfoI RGCGCY 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 464
BfuI GTATCC 1 cut(s) 885
BisI GCNGC 6 cut(s) 7, 190, 338, 351, 408, 720
BlpI GCTNAGC 2 cut(s) 1043, 1052
BlsI GCNGC 6 cut(s) 8, 191, 339, 352, 409, 721
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 3 cut(s) 347, 375, 1006
BmiI GGNNCC 4 cut(s) 10, 243, 331, 613
BmrFI CCNGG 3 cut(s) 347, 375, 1006
BmsI GCATC 3 cut(s) 469, 971, 993
BoxI GACNNNNGTC 1 cut(s) 306
BpiI GAAGAC 3 cut(s) 274, 572, 957
Bpu10I CCTNAGC 1 cut(s) 777
Bpu1102I GCTNAGC 2 cut(s) 1043, 1052
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 1006
BsaBI GATNNNNATC 2 cut(s) 179, 750
BsaXI ACNNNNNCTCC 2 cut(s) 1076, 1106
Bsc4I CCNNNNNNNGG 1 cut(s) 1081
Bse1I ACTGG 3 cut(s) 152, 193, 1075
Bse3DI GCAATG 2 cut(s) 73, 793
Bse8I GATNNNNATC 2 cut(s) 179, 750
BseBI CCWGG 2 cut(s) 347, 375
BseGI GGATG 5 cut(s) 204, 629, 919, 986, 1066
BseJI GATNNNNATC 2 cut(s) 179, 750
BseLI CCNNNNNNNGG 1 cut(s) 1081
BseMI GCAATG 2 cut(s) 73, 793
BseMII CTCAG 5 cut(s) 671, 722, 768, 821, 1043
BseNI ACTGG 3 cut(s) 152, 193, 1075
BseRI GAGGAG 1 cut(s) 545
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 201, 349, 706
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 306, 767
BshNI GGYRCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 2 cut(s) 555, 783
BsiSI CCGG 2 cut(s) 186, 1005
BslFI GGGAC 4 cut(s) 176, 337, 516, 615
BslI CCNNNNNNNGG 1 cut(s) 1081
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 4 cut(s) 176, 337, 516, 615
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 2 cut(s) 306, 767
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 555, 783
Bsp143I GATC 4 cut(s) 16, 180, 390, 1024
Bsp1720I GCTNAGC 2 cut(s) 1043, 1052
BspACI CCGC 4 cut(s) 6, 260, 350, 408
BspANI GGCC 2 cut(s) 306, 767
BspCNI CTCAG 5 cut(s) 672, 721, 769, 822, 1044
BspLI GGNNCC 4 cut(s) 10, 243, 331, 613
BspMI ACCTGC 1 cut(s) 464
BspQI GCTCTTC 1 cut(s) 788
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 2 cut(s) 73, 793
BsrI ACTGG 3 cut(s) 152, 193, 1075
BssMI GATC 4 cut(s) 16, 180, 390, 1024
Bst2UI CCWGG 2 cut(s) 347, 375
Bst4CI ACNGT 4 cut(s) 54, 103, 144, 283
Bst6I CTCTTC 1 cut(s) 788
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 1049
BstDEI CTNAG 7 cut(s) 654, 680, 708, 777, 830, 1043, 1052
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 5 cut(s) 204, 629, 919, 986, 1066
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 2 cut(s) 355, 849
BstKTI GATC 4 cut(s) 19, 183, 393, 1027
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 4 cut(s) 16, 180, 390, 1024
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 5 cut(s) 210, 359, 479, 1048, 1053
BstNI CCWGG 2 cut(s) 347, 375
BstNSI RCATGY 2 cut(s) 608, 1051
BstPAI GACNNNNGTC 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 345, 373, 1004
BstV1I GCAGC 3 cut(s) 201, 349, 706
BstV2I GAAGAC 3 cut(s) 274, 572, 957
BstZI CGGCCG 1 cut(s) 304
BsuI GTATCC 1 cut(s) 885
BsuRI GGCC 2 cut(s) 306, 767
BtsCI GGATG 5 cut(s) 204, 629, 919, 986, 1066
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 5 cut(s) 12, 99, 200, 400, 856
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 1049
CfoI GCGC 2 cut(s) 355, 849
Csp6I GTAC 5 cut(s) 145, 171, 576, 684, 886
CviAII CATG 4 cut(s) 506, 605, 808, 1048
CviQI GTAC 5 cut(s) 145, 171, 576, 684, 886
DdeI CTNAG 7 cut(s) 654, 680, 708, 777, 830, 1043, 1052
DpnI GATC 4 cut(s) 18, 182, 392, 1026
DpnII GATC 4 cut(s) 16, 180, 390, 1024
DraIII CACNNNGTG 2 cut(s) 316, 692
EaeI YGGCCR 1 cut(s) 304
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
Ecl136II GAGCTC 1 cut(s) 781
EclXI CGGCCG 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 783
Eco52I CGGCCG 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 781
Eco91I GGTNACC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 781
EcoO65I GGTNACC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 2 cut(s) 345, 373
EcoT22I ATGCAT 1 cut(s) 986
EcoT38I GRGCYC 1 cut(s) 783
FaeI CATG 4 cut(s) 509, 608, 811, 1051
FaqI GGGAC 4 cut(s) 176, 337, 516, 615
FatI CATG 4 cut(s) 505, 604, 807, 1047
FbaI TGATCA 2 cut(s) 16, 1024
Fnu4HI GCNGC 6 cut(s) 7, 190, 338, 351, 408, 720
FokI GGATG 5 cut(s) 211, 636, 906, 993, 1073
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 6 cut(s) 7, 190, 338, 351, 408, 720
FspBI CTAG 2 cut(s) 84, 900
GlaI GCGC 2 cut(s) 354, 848
GluI GCNGC 6 cut(s) 7, 190, 338, 351, 408, 720
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 2 cut(s) 306, 767
HapII CCGG 2 cut(s) 186, 1005
HhaI GCGC 2 cut(s) 355, 849
Hin1II CATG 4 cut(s) 509, 608, 811, 1051
Hin6I GCGC 2 cut(s) 353, 847
HinP1I GCGC 2 cut(s) 353, 847
HpaII CCGG 2 cut(s) 186, 1005
HphI GGTGA 6 cut(s) 84, 134, 190, 211, 488, 538
Hpy166II GTNNAC 3 cut(s) 301, 529, 686
Hpy188I TCNGA 3 cut(s) 21, 279, 989
Hpy188III TCNNGA 5 cut(s) 113, 431, 559, 634, 900
Hpy8I GTNNAC 3 cut(s) 301, 529, 686
HpyAV CCTTC 2 cut(s) 493, 631
HpyCH4III ACNGT 4 cut(s) 54, 103, 144, 283
HpyCH4V TGCA 6 cut(s) 35, 722, 762, 945, 984, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 210, 359, 479, 1048, 1053
HpyF3I CTNAG 7 cut(s) 654, 680, 708, 777, 830, 1043, 1052
Hsp92II CATG 4 cut(s) 509, 608, 811, 1051
HspAI GCGC 2 cut(s) 353, 847
Ksp22I TGATCA 2 cut(s) 16, 1024
Kzo9I GATC 4 cut(s) 16, 180, 390, 1024
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 4 cut(s) 241, 335, 415, 558
Lsp1109I GCAGC 3 cut(s) 201, 349, 706
LweI GCATC 3 cut(s) 469, 971, 993
MaeI CTAG 2 cut(s) 84, 900
MaeIII GTNAC 2 cut(s) 122, 308
MalI GATC 4 cut(s) 18, 182, 392, 1026
MbiI CCGCTC 1 cut(s) 410
MboI GATC 4 cut(s) 16, 180, 390, 1024
MboII GAAGA 6 cut(s) 279, 577, 670, 775, 962, 1011
MhlI GDGCHC 2 cut(s) 555, 783
MluCI AATT 5 cut(s) 248, 668, 757, 855, 905
Mph1103I ATGCAT 1 cut(s) 986
MseI TTAA 5 cut(s) 728, 860, 1037, 1101, 1123
MslI CAYNNNNRTG 4 cut(s) 317, 521, 931, 989
MspI CCGG 2 cut(s) 186, 1005
MspR9I CCNGG 3 cut(s) 347, 375, 1006
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 2 cut(s) 347, 375
MwoI GCNNNNNNNGC 5 cut(s) 210, 359, 479, 1048, 1053
NciI CCSGG 1 cut(s) 1006
NdeII GATC 4 cut(s) 16, 180, 390, 1024
NlaIII CATG 4 cut(s) 509, 608, 811, 1051
NlaIV GGNNCC 4 cut(s) 10, 243, 331, 613
NmuCI GTSAC 2 cut(s) 122, 308
NsiI ATGCAT 1 cut(s) 986
NspI RCATGY 2 cut(s) 608, 1051
NspV TTCGAA 1 cut(s) 138
PaeI GCATGC 1 cut(s) 1051
PaqCI CACCTGC 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 788
PctI GAATGC 1 cut(s) 295
PflFI GACNNNGTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 1081
PkrI GCNGC 6 cut(s) 8, 191, 339, 352, 409, 721
PshAI GACNNNNGTC 1 cut(s) 306
PsiI TTATAA 1 cut(s) 974
Psp124BI GAGCTC 1 cut(s) 783
Psp6I CCWGG 2 cut(s) 345, 373
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 2 cut(s) 345, 373
PspN4I GGNNCC 4 cut(s) 10, 243, 331, 613
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 5 cut(s) 146, 172, 577, 685, 887
RsaNI GTAC 5 cut(s) 145, 171, 576, 684, 886
RseI CAYNNNNRTG 4 cut(s) 317, 521, 931, 989
SacI GAGCTC 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 788
SaqAI TTAA 5 cut(s) 728, 860, 1037, 1101, 1123
SatI GCNGC 6 cut(s) 7, 190, 338, 351, 408, 720
Sau3AI GATC 4 cut(s) 16, 180, 390, 1024
ScaI AGTACT 1 cut(s) 887
ScrFI CCNGG 3 cut(s) 347, 375, 1006
SduI GDGCHC 2 cut(s) 555, 783
SfaNI GCATC 3 cut(s) 469, 971, 993
SfuI TTCGAA 1 cut(s) 138
SmiMI CAYNNNNRTG 4 cut(s) 317, 521, 931, 989
SphI GCATGC 1 cut(s) 1051
Sse9I AATT 5 cut(s) 248, 668, 757, 855, 905
SsiI CCGC 4 cut(s) 6, 260, 350, 408
SspI AATATT 1 cut(s) 1099
SspMI CTAG 2 cut(s) 84, 900
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 3 cut(s) 345, 373, 1004
TaaI ACNGT 4 cut(s) 54, 103, 144, 283
TaqI TCGA 5 cut(s) 114, 138, 560, 843, 1071
TasI AATT 5 cut(s) 248, 668, 757, 855, 905
TatI WGTACW 3 cut(s) 575, 683, 885
TauI GCSGC 3 cut(s) 9, 353, 410
Tru1I TTAA 5 cut(s) 728, 860, 1037, 1101, 1123
Tru9I TTAA 5 cut(s) 728, 860, 1037, 1101, 1123
TscAI CASTG 5 cut(s) 19, 106, 200, 400, 856
TseFI GTSAC 2 cut(s) 122, 308
TseI GCWGC 3 cut(s) 189, 337, 719
Tsp45I GTSAC 2 cut(s) 122, 308
TspDTI ATGAA 3 cut(s) 263, 578, 927
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 5 cut(s) 19, 106, 200, 400, 856
Tth111I GACNNNGTC 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 1081
XapI RAATTY 4 cut(s) 248, 668, 855, 905
XbaI TCTAGA 1 cut(s) 899
XceI RCATGY 2 cut(s) 608, 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 930
XspI CTAG 2 cut(s) 84, 900
ZrmI AGTACT 1 cut(s) 887
Zsp2I ATGCAT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.