Rh4BG329800

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007287
Physical Location & Seq
Forward (+)
49550434 .. 49551602
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG329800.1

Sequence Viewer

Length: 453 bp
ATGGGGAAGACGACATTAGAAGATAGAGAACTGAAAGCCAAGTTTGCGGTGTATGCAGAAGTAAATATGTGTTGTTATGATGGTATTGGTGAGAGTGACCAAGAAATGGATGCTGAAGATGAGGAGGATCTTGTGATGGCTCAAAGATGGGAGAGGCTGAGAGAAGTGGTCGAGCGCAGTGAAATTTTCAGTCTGCCCAAGTATCCCAAAGAGTACTGCCTCTTTTCTGGAGAATTCAATGAATCACATCCAGCATTTGCGTGGTTGAAGTGCAAGGAAGACATAGACTTGGAGAAGTTTATAAGAGGATGCATCAAAGTGCAAGGAAGAACAGGGAGGAAGTTTGGGAGTGATCAAAAGTATTTAAGGCTTAGCATGCTGAGCAAGGATGAGGTTTTCGACCAGTTCTTGGAGAGATTGTCAACTATTAAAGCCATTAGTAATGGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

150

Amino Acids

17.54

Weight (kDa)

4.93

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 44 - 143 8.8e-29 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AccB7I CCANNNNNTGG 2 cut(s) 106, 409
AciI CCGC 1 cut(s) 47
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 183, 233
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 106, 409
AgsI TTSAA 2 cut(s) 238, 268
AlwI GGATC 1 cut(s) 135
ApoI RAATTY 2 cut(s) 183, 233
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 14, 285
BccI CCATC 3 cut(s) 74, 130, 141
BciVI GTATCC 1 cut(s) 213
BclI TGATCA 1 cut(s) 352
BfuI GTATCC 1 cut(s) 213
BlpI GCTNAGC 2 cut(s) 371, 380
BmcAI AGTACT 1 cut(s) 215
BmsI GCATC 3 cut(s) 100, 299, 321
BpiI GAAGAC 2 cut(s) 14, 285
BpmI CTGGAG 1 cut(s) 249
Bpu1102I GCTNAGC 2 cut(s) 371, 380
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 409
Bse1I ACTGG 1 cut(s) 403
BseGI GGATG 4 cut(s) 115, 247, 314, 394
BseLI CCNNNNNNNGG 2 cut(s) 106, 409
BseMII CTCAG 2 cut(s) 149, 371
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 106, 409
Bsp143I GATC 2 cut(s) 127, 352
Bsp1720I GCTNAGC 2 cut(s) 371, 380
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 150, 372
BspPI GGATC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 403
BssMI GATC 2 cut(s) 127, 352
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 158, 371, 380
BstF5I GGATG 4 cut(s) 115, 247, 314, 394
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 130, 355
BstMBI GATC 2 cut(s) 127, 352
BstMWI GCNNNNNNNGC 4 cut(s) 44, 53, 376, 381
BstNSI RCATGY 1 cut(s) 379
BstV2I GAAGAC 2 cut(s) 14, 285
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuI GTATCC 1 cut(s) 213
BtsCI GGATG 4 cut(s) 115, 247, 314, 394
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 377
CfoI GCGC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 376
CviJI RGCY 5 cut(s) 38, 140, 157, 370, 434
CviKI_1 RGCY 5 cut(s) 38, 140, 157, 370, 434
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 158, 371, 380
DpnI GATC 2 cut(s) 129, 354
DpnII GATC 2 cut(s) 127, 352
Eco57I CTGAAG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 314
FaeI CATG 1 cut(s) 379
FaiI YATR 6 cut(s) 54, 68, 78, 284, 302, 377
FatI CATG 1 cut(s) 375
FbaI TGATCA 1 cut(s) 352
FokI GGATG 4 cut(s) 122, 234, 321, 401
GlaI GCGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 249
HhaI GCGC 1 cut(s) 177
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 1 cut(s) 242
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 423
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 423
HpyCH4V TGCA 4 cut(s) 56, 273, 312, 322
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 53, 376, 381
HpyF3I CTNAG 3 cut(s) 158, 371, 380
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 2 cut(s) 127, 352
LpnPI CCDG 4 cut(s) 213, 264, 318, 416
LweI GCATC 3 cut(s) 100, 299, 321
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 129, 354
MboI GATC 2 cut(s) 127, 352
MboII GAAGA 5 cut(s) 19, 32, 128, 290, 339
MflI RGATCY 1 cut(s) 127
MluCI AATT 2 cut(s) 183, 233
MnlI CCTC 7 cut(s) 115, 118, 147, 230, 299, 330, 385
Mph1103I ATGCAT 1 cut(s) 314
MseI TTAA 3 cut(s) 365, 429, 451
MslI CAYNNNNRTG 2 cut(s) 259, 317
MwoI GCNNNNNNNGC 4 cut(s) 44, 53, 376, 381
NdeII GATC 2 cut(s) 127, 352
NlaIII CATG 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 314
NspI RCATGY 1 cut(s) 379
PaeI GCATGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 242
PflMI CCANNNNNTGG 2 cut(s) 106, 409
PsiI TTATAA 1 cut(s) 302
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 259, 317
SaqAI TTAA 3 cut(s) 365, 429, 451
Sau3AI GATC 2 cut(s) 127, 352
ScaI AGTACT 1 cut(s) 215
SetI ASST 1 cut(s) 396
SfaNI GCATC 3 cut(s) 100, 299, 321
SmiMI CAYNNNNRTG 2 cut(s) 259, 317
SphI GCATGC 1 cut(s) 379
Sse9I AATT 2 cut(s) 183, 233
SsiI CCGC 1 cut(s) 47
TaqI TCGA 2 cut(s) 171, 399
TasI AATT 2 cut(s) 183, 233
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 365, 429, 451
Tru9I TTAA 3 cut(s) 365, 429, 451
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 2 cut(s) 106, 409
XapI RAATTY 2 cut(s) 183, 233
XceI RCATGY 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.