Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8104156.1

Orthogroup ID

OG0007287

Physical Location & Seq

Genomic Coordinates Forward (+)

193 .. 552

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8104156.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgtttaatgaggattttgatggcaggggtgacccaacaatgttcgaaccgtactggaaaaagatgggggacaagggtacgatggtgatctccggcagccagtggatgagctatgtcagcgacttcaccaacatctgcttttttatggagccagaatttgagggtgcggttagaagacttcatcggacggttgggaatgctgtggtggacggccgtcacattgtggtggggacaggctccacgcagctctaccaggcggcgctgtatgctctcacttctcctggtggggcggagccgatcagtgtcgtgtctgccgctccttactactcggtgagcctcattgaccccctccttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

4.77

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23320 AT1G70560
fragaria_vesca	FvH4_4g25850
malus_domestica	MD13G1097300.v1.1 MD16G1098400.v1.1
prunus_persica	Prupe.1G248200_v2.0.a1 Prupe.1G248300_v2.0.a1
pyrus_communis	pycom16g08370
rosa_chinensis	RchiOBHm_Chr4g0433291
rosa_laevigata	RLG00000006766
rosa_multiflora	Rmu_co8104156.1_g000001 Rmu_sc0000354.1_g000004 Rmu_sc0002512.1_g000004
rosa_roxburghii	Rroxscaffold_5G00374850 Rroxscaffold_5G00381590
rosa_rugosa	Rorug04G0267700 Rorug04G0267700 Rorug04G0267800
rosa_samantha	Rh4AG322400 Rh4BG329700 Rh4BG329800 Rh4CG345000 Rh4CG345200 Rh4DG326500
rosa_wichuraiana	Rw4G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	317
AciI	CCGC	4 cut(s)	167, 257, 290, 315
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	223
AfaI	GTAC	2 cut(s)	53, 79
AjnI	CCWGG	2 cut(s)	252, 280
AluBI	AGCT	2 cut(s)	111, 247
AluI	AGCT	2 cut(s)	111, 247
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	96, 244
ApoI	RAATTY	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	262
AsuHPI	GGTGA	4 cut(s)	41, 97, 118, 343
AsuII	TTCGAA	1 cut(s)	45
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BbsI	GAAGAC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	108, 256
BccI	CCATC	3 cut(s)	14, 58, 76
BceAI	ACGGC	2 cut(s)	198, 226
BciT130I	CCWGG	2 cut(s)	254, 282
BfoI	RGCGCY	1 cut(s)	263
BisI	GCNGC	4 cut(s)	97, 245, 258, 315
BlsI	GCNGC	4 cut(s)	98, 246, 259, 316
Bme1390I	CCNGG	2 cut(s)	254, 282
BmiI	GGNNCC	3 cut(s)	150, 238, 294
BmrFI	CCNGG	2 cut(s)	254, 282
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	181
Bpu14I	TTCGAA	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	59, 100
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	254, 282
BseGI	GGATG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	59, 100
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	108, 256
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	83, 244
BsmFI	GGGAC	2 cut(s)	83, 244
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	87, 297
BspACI	CCGC	4 cut(s)	167, 257, 290, 315
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	150, 238, 294
BspT104I	TTCGAA	1 cut(s)	45
BsrBI	CCGCTC	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	59, 100
BssMI	GATC	2 cut(s)	87, 297
Bst2UI	CCWGG	2 cut(s)	254, 282
Bst4CI	ACNGT	2 cut(s)	51, 190
BstBI	TTCGAA	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	2 cut(s)	90, 300
BstMBI	GATC	2 cut(s)	87, 297
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 266
BstNI	CCWGG	2 cut(s)	254, 282
BstPAI	GACNNNNGTC	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	252, 280
BstV1I	GCAGC	2 cut(s)	108, 256
BstV2I	GAAGAC	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	107, 307
CfoI	GCGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	52, 78
CviJI	RGCY	8 cut(s)	99, 111, 151, 213, 237, 247, 295, 336
CviKI_1	RGCY	8 cut(s)	99, 111, 151, 213, 237, 247, 295, 336
CviQI	GTAC	2 cut(s)	52, 78
DpnI	GATC	2 cut(s)	89, 299
DpnII	GATC	2 cut(s)	87, 297
DraIII	CACNNNGTG	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	211
Eco52I	CGGCCG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	252, 280
FaiI	YATR	3 cut(s)	114, 146, 267
FaqI	GGGAC	2 cut(s)	83, 244
Fnu4HI	GCNGC	4 cut(s)	97, 245, 258, 315
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	97, 245, 258, 315
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	4 cut(s)	97, 245, 258, 315
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	4 cut(s)	41, 97, 118, 343
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	51, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 266
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	87, 297
LmnI	GCTCC	4 cut(s)	148, 242, 292, 322
Lsp1109I	GCAGC	2 cut(s)	108, 256
MaeIII	GTNAC	2 cut(s)	29, 215
MalI	GATC	2 cut(s)	89, 299
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	2 cut(s)	87, 297
MboII	GAAGA	1 cut(s)	186
MluCI	AATT	2 cut(s)	155, 355
MnlI	CCTC	4 cut(s)	4, 154, 347, 359
MseI	TTAA	3 cut(s)	6, 354, 358
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	254, 282
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	254, 282
MwoI	GCNNNNNNNGC	2 cut(s)	117, 266
NdeII	GATC	2 cut(s)	87, 297
NlaIV	GGNNCC	3 cut(s)	150, 238, 294
NmuCI	GTSAC	2 cut(s)	29, 215
NspV	TTCGAA	1 cut(s)	45
PacI	TTAATTAA	1 cut(s)	358
PctI	GAATGC	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	98, 246, 259, 316
PshAI	GACNNNNGTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	252, 280
PspEI	GGTNACC	1 cut(s)	29
PspGI	CCWGG	2 cut(s)	252, 280
PspN4I	GGNNCC	3 cut(s)	150, 238, 294
RsaI	GTAC	2 cut(s)	53, 79
RsaNI	GTAC	2 cut(s)	52, 78
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	6, 354, 358
SatI	GCNGC	4 cut(s)	97, 245, 258, 315
Sau3AI	GATC	2 cut(s)	87, 297
ScrFI	CCNGG	2 cut(s)	254, 282
SetI	ASST	2 cut(s)	113, 249
SfuI	TTCGAA	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	155, 355
SsiI	CCGC	4 cut(s)	167, 257, 290, 315
StyD4I	CCNGG	2 cut(s)	252, 280
TaaI	ACNGT	2 cut(s)	51, 190
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	155, 355
TauI	GCSGC	2 cut(s)	260, 317
Tru1I	TTAA	3 cut(s)	6, 354, 358
Tru9I	TTAA	3 cut(s)	6, 354, 358
TscAI	CASTG	2 cut(s)	107, 307
TseFI	GTSAC	2 cut(s)	29, 215
TseI	GCWGC	2 cut(s)	96, 244
Tsp45I	GTSAC	2 cut(s)	29, 215
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	107, 307
XapI	RAATTY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.