Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002512.1

Orthogroup ID

OG0007287

Physical Location & Seq

Genomic Coordinates Forward (+)

17929 .. 18807

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002512.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgcaccctctcaacactgagctatatataatagagaagcatgaacgaggagaactaatactgagagcattgtcaatccaaaatcaacctattcgtgttcttagagaaggagacaaaatgtgcggcaccactgatcagaaccctaaccctgcaacccctaacaaaactccgtcagctaatggcaatggcacaacaaggtctagcgtttcacctgacactgtcctcaatctggaacagggtgacccaacaatgttcgaaccgtactggaaaaagatgggggacaagggtacgatggtgatctccggcagccagtggatgagctatgtcagcgacttcaccaacatctgcttttttatggagccagaatttgagggtgcggttagaagacttcatcggacggttgggaatgctgtggtggacggccgtcacattgtggtggggacaggctccacgcagctctaccaggcggcgctgtatgctctcacttctcctggtggggcggagccgatcagtgtcgtgtctgccgctccttactactcggtgagcctcattgaccccctccttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

189

Amino Acids

20.7

Weight (kDa)

5.54

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23320 AT1G70560
fragaria_vesca	FvH4_4g25850
malus_domestica	MD13G1097300.v1.1 MD16G1098400.v1.1
prunus_persica	Prupe.1G248200_v2.0.a1 Prupe.1G248300_v2.0.a1
pyrus_communis	pycom16g08370
rosa_chinensis	RchiOBHm_Chr4g0433291
rosa_laevigata	RLG00000006766
rosa_multiflora	Rmu_co8104156.1_g000001 Rmu_sc0000354.1_g000004 Rmu_sc0002512.1_g000004
rosa_roxburghii	Rroxscaffold_5G00374850 Rroxscaffold_5G00381590
rosa_rugosa	Rorug04G0267700 Rorug04G0267700 Rorug04G0267800
rosa_samantha	Rh4AG322400 Rh4BG329700 Rh4BG329800 Rh4CG345000 Rh4CG345200 Rh4DG326500
rosa_wichuraiana	Rw4G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccBSI	CCGCTC	1 cut(s)	527
AciI	CCGC	5 cut(s)	123, 377, 467, 500, 525
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	2 cut(s)	263, 289
AfiI	CCNNNNNNNGG	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	462, 490
AluBI	AGCT	4 cut(s)	22, 176, 321, 457
AluI	AGCT	4 cut(s)	22, 176, 321, 457
Alw26I	GTCTC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	306, 454
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	472
AsuHPI	GGTGA	5 cut(s)	201, 251, 307, 328, 553
AsuII	TTCGAA	1 cut(s)	255
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	318, 466
BccI	CCATC	2 cut(s)	268, 286
BceAI	ACGGC	2 cut(s)	408, 436
BciT130I	CCWGG	2 cut(s)	464, 492
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	473
BisI	GCNGC	5 cut(s)	124, 307, 455, 468, 525
BlsI	GCNGC	5 cut(s)	125, 308, 456, 469, 526
Bme1390I	CCNGG	2 cut(s)	464, 492
BmiI	GGNNCC	4 cut(s)	127, 360, 448, 504
BmrFI	CCNGG	2 cut(s)	464, 492
BoxI	GACNNNNGTC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	391
Bpu14I	TTCGAA	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	269, 310
Bse3DI	GCAATG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	464, 492
BseGI	GGATG	1 cut(s)	321
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	9, 53
BseNI	ACTGG	2 cut(s)	269, 310
BseRI	GAGGAG	1 cut(s)	63
BseX3I	CGGCCG	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	318, 466
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	1 cut(s)	423
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	293, 454
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	2 cut(s)	293, 454
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	423
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	133, 297, 507
BspACI	CCGC	5 cut(s)	123, 377, 467, 500, 525
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	2 cut(s)	10, 54
BspLI	GGNNCC	4 cut(s)	127, 360, 448, 504
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	269, 310
BssMI	GATC	3 cut(s)	133, 297, 507
Bst2UI	CCWGG	2 cut(s)	464, 492
Bst4CI	ACNGT	3 cut(s)	220, 261, 400
BstBI	TTCGAA	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	18, 62, 101
BstEII	GGTNACC	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	3 cut(s)	136, 300, 510
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	3 cut(s)	133, 297, 507
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 476
BstNI	CCWGG	2 cut(s)	464, 492
BstPAI	GACNNNNGTC	1 cut(s)	423
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	462, 490
BstV1I	GCAGC	2 cut(s)	318, 466
BstV2I	GAAGAC	1 cut(s)	391
BstZI	CGGCCG	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	5 cut(s)	15, 129, 216, 317, 517
CfoI	GCGC	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	262, 288
CviAII	CATG	1 cut(s)	41
CviQI	GTAC	2 cut(s)	262, 288
DdeI	CTNAG	3 cut(s)	18, 62, 101
DpnI	GATC	3 cut(s)	135, 299, 509
DpnII	GATC	3 cut(s)	133, 297, 507
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	421
EagI	CGGCCG	1 cut(s)	421
EciI	GGCGGA	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	421
Eco52I	CGGCCG	1 cut(s)	421
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	462, 490
FaeI	CATG	1 cut(s)	44
FaiI	YATR	7 cut(s)	25, 27, 29, 42, 324, 356, 477
FaqI	GGGAC	2 cut(s)	293, 454
FatI	CATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	5 cut(s)	124, 307, 455, 468, 525
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	5 cut(s)	124, 307, 455, 468, 525
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	5 cut(s)	124, 307, 455, 468, 525
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	5 cut(s)	201, 251, 307, 328, 553
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	138, 396
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	3 cut(s)	220, 261, 400
HpyCH4V	TGCA	2 cut(s)	4, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 476
HpyF3I	CTNAG	3 cut(s)	18, 62, 101
Hsp92II	CATG	1 cut(s)	44
HspAI	GCGC	1 cut(s)	470
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 297, 507
LmnI	GCTCC	4 cut(s)	358, 452, 502, 532
Lsp1109I	GCAGC	2 cut(s)	318, 466
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	239, 425
MalI	GATC	3 cut(s)	135, 299, 509
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	3 cut(s)	133, 297, 507
MboII	GAAGA	1 cut(s)	396
MluCI	AATT	2 cut(s)	365, 565
MnlI	CCTC	6 cut(s)	18, 41, 233, 364, 557, 569
MseI	TTAA	2 cut(s)	564, 568
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	2 cut(s)	464, 492
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	464, 492
MwoI	GCNNNNNNNGC	2 cut(s)	327, 476
NdeII	GATC	3 cut(s)	133, 297, 507
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	4 cut(s)	127, 360, 448, 504
NmuCI	GTSAC	2 cut(s)	239, 425
NspV	TTCGAA	1 cut(s)	255
PacI	TTAATTAA	1 cut(s)	568
PctI	GAATGC	1 cut(s)	412
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	5 cut(s)	125, 308, 456, 469, 526
PshAI	GACNNNNGTC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	462, 490
PspEI	GGTNACC	1 cut(s)	239
PspGI	CCWGG	2 cut(s)	462, 490
PspN4I	GGNNCC	4 cut(s)	127, 360, 448, 504
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	2 cut(s)	263, 289
RsaNI	GTAC	2 cut(s)	262, 288
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	564, 568
SatI	GCNGC	5 cut(s)	124, 307, 455, 468, 525
Sau3AI	GATC	3 cut(s)	133, 297, 507
ScrFI	CCNGG	2 cut(s)	464, 492
SetI	ASST	7 cut(s)	24, 91, 178, 200, 214, 323, 459
SfuI	TTCGAA	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	365, 565
SsiI	CCGC	5 cut(s)	123, 377, 467, 500, 525
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	462, 490
TaaI	ACNGT	3 cut(s)	220, 261, 400
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	365, 565
TauI	GCSGC	3 cut(s)	126, 470, 527
Tru1I	TTAA	2 cut(s)	564, 568
Tru9I	TTAA	2 cut(s)	564, 568
TscAI	CASTG	5 cut(s)	22, 136, 223, 317, 517
TseFI	GTSAC	2 cut(s)	239, 425
TseI	GCWGC	2 cut(s)	306, 454
Tsp45I	GTSAC	2 cut(s)	239, 425
TspDTI	ATGAA	2 cut(s)	57, 380
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	5 cut(s)	22, 136, 223, 317, 517
Tth111I	GACNNNGTC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	365
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.