Rroxscaffold_5G00381590

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007287
Physical Location & Seq
Reverse (-)
61526358 .. 61528818
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381590.1

Sequence Viewer

Length: 552 bp
ATGGAAAGGAAGGCAACTAATTCTGGAAGAGTAATGGGGAATGCAATTGAAGGTAATATTTTAGCTGGGCATATGAGTTTGTGCCAGAGGACAGAGATTGCTAAGAAGATGGCTAAATTCGTAGAGCTGAGTACACTCGGTGTGTCCAAGGTTTCTCAGCACCGAGCTGCAAAGTTAATTTGTGATGGCTATCAAATTTGCAAGGCCAAAAACCCTGGGCTCCTCTTTGAGCACTGCCAGAACCCCATGGCTCAAAGGTGGGAAAGGCTGAGAGAAGCGGTCGAGCGCAATGAAATTTTCAGTCTGCCCAAGTATCCCAAGGAGCACTGCCTCTTTTCTGGAGAATTCAATGAACCACATCCAACATTTGCATGGTTGAAGTGCAAGGAAGACATAGACTTGAAGAAGTTTATGAGAGGATGGATCAAAGTGCAAGGAAGAACTGGGAGGAAGTTGGGGAGTGATCAAAAGTATACGAGGATTAGCATGTTGAGCAAGGATGAGGTAAATTACAAGTCAATGAACACGAGAGGTTTTCAAATCACACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

183

Amino Acids

21.08

Weight (kDa)

9.65

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 27 - 169 1.2e-33 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 473
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 4 cut(s) 116, 195, 294, 344
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 5 cut(s) 50, 349, 379, 403, 539
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 3 cut(s) 65, 127, 167
AluI AGCT 3 cut(s) 65, 127, 167
Alw21I GWGCWC 2 cut(s) 234, 327
AlwI GGATC 1 cut(s) 431
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 4 cut(s) 116, 195, 294, 344
AspLEI GCGC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 234, 327
BbvI GCAGC 1 cut(s) 154
BccI CCATC 3 cut(s) 103, 179, 414
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 1 cut(s) 324
BclI TGATCA 1 cut(s) 463
BfuI GTATCC 1 cut(s) 324
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 5 cut(s) 147, 214, 215, 246, 318
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 5 cut(s) 147, 214, 215, 246, 318
BseGI GGATG 3 cut(s) 358, 425, 505
BseJI GATNNNNATC 1 cut(s) 189
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 3 cut(s) 119, 170, 260
BseNI ACTGG 1 cut(s) 448
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 234, 327
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 3 cut(s) 222, 234, 327
Bsp143I GATC 2 cut(s) 423, 463
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 3 cut(s) 120, 169, 261
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 5 cut(s) 147, 214, 215, 246, 318
BssMI GATC 2 cut(s) 423, 463
BssNAI GTATAC 1 cut(s) 474
BssSI CACGAG 1 cut(s) 526
BssT1I CCWWGG 3 cut(s) 147, 246, 318
Bst1107I GTATAC 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 22
BstDEI CTNAG 4 cut(s) 102, 128, 156, 269
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 358, 425, 505
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 2 cut(s) 426, 466
BstMBI GATC 2 cut(s) 423, 463
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 396
BstZ17I GTATAC 1 cut(s) 474
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 358, 425, 505
BtsI GCAGTG 2 cut(s) 232, 325
BtsIMutI CAGTG 2 cut(s) 232, 325
CfoI GCGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 132
CviAII CATG 3 cut(s) 247, 372, 487
CviJI RGCY 9 cut(s) 65, 113, 127, 167, 189, 206, 220, 251, 268
CviKI_1 RGCY 9 cut(s) 65, 113, 127, 167, 189, 206, 220, 251, 268
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 4 cut(s) 102, 128, 156, 269
DpnI GATC 2 cut(s) 425, 465
DpnII GATC 2 cut(s) 423, 463
DraIII CACNNNGTG 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 3 cut(s) 147, 246, 318
Eco24I GRGCYC 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 147, 246, 318
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 3 cut(s) 147, 246, 318
FaeI CATG 3 cut(s) 250, 375, 490
FaiI YATR 8 cut(s) 72, 74, 248, 373, 395, 413, 474, 488
FatI CATG 3 cut(s) 246, 371, 486
FauNDI CATATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 3 cut(s) 345, 432, 512
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 206
HhaI GCGC 1 cut(s) 288
Hin1II CATG 3 cut(s) 250, 375, 490
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 134, 474
Hpy188III TCNNGA 2 cut(s) 24, 339
Hpy8I GTNNAC 2 cut(s) 134, 474
HpyAV CCTTC 2 cut(s) 4, 44
HpyCH4V TGCA 6 cut(s) 44, 170, 201, 371, 384, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 4 cut(s) 102, 128, 156, 269
Hsp92II CATG 3 cut(s) 250, 375, 490
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 2 cut(s) 423, 463
LmnI GCTCC 2 cut(s) 225, 322
LpnPI CCDG 8 cut(s) 9, 51, 98, 201, 228, 251, 324, 429
Lsp1109I GCAGC 1 cut(s) 154
MalI GATC 2 cut(s) 425, 465
MboI GATC 2 cut(s) 423, 463
MboII GAAGA 5 cut(s) 39, 118, 401, 415, 450
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 3 cut(s) 222, 234, 327
MluCI AATT 8 cut(s) 19, 45, 116, 177, 195, 294, 344, 508
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 8 cut(s) 81, 233, 341, 410, 441, 471, 496, 524
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 216
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 492
NcoI CCATGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 72
NdeII GATC 2 cut(s) 423, 463
NlaIII CATG 3 cut(s) 250, 375, 490
NlaIV GGNNCC 1 cut(s) 221
NspI RCATGY 1 cut(s) 490
PasI CCCWGGG 1 cut(s) 215
PctI GAATGC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 221
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 370
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 423, 463
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 3 cut(s) 222, 234, 327
SetI ASST 8 cut(s) 55, 67, 129, 153, 169, 260, 507, 535
SmiMI CAYNNNNRTG 1 cut(s) 370
Sse9I AATT 8 cut(s) 19, 45, 116, 177, 195, 294, 344, 508
SsiI CCGC 1 cut(s) 278
SspI AATATT 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 3 cut(s) 147, 246, 318
TaqI TCGA 1 cut(s) 282
TasI AATT 8 cut(s) 19, 45, 116, 177, 195, 294, 344, 508
TatI WGTACW 1 cut(s) 131
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 239, 332
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 306, 366, 536
TspRI CASTG 2 cut(s) 239, 332
XapI RAATTY 4 cut(s) 116, 195, 294, 344
XceI RCATGY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.