Prupe.1G248300_v2.0.a1

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007287
Physical Location & Seq
Reverse (-)
26086989 .. 26088966
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G248300.1

Sequence Viewer

Length: 1065 bp
ATGGAGGACAAGTGCACGATGGTGATCTCTGGGAGCCAACTGATGAGCTATATCAGCGACTTCACCACCATCTGCTGGTTTATGGAGCCAGAATTTCAGGAGGCAGTTAGGAGGCTTCATCGTGTGGTTGGAAATGCAGTGGTGGATGATCGGTATATTGTAGTGGGGACAGGCTCCACCCAGCTTTATCAGGCTGCGTTGTATGCTCTCACTTCCCCTGGTGGTCCTGAGCCCGTCAGCGTTGTGTCTGCTTCCCCTTACTACTCGGCATATCCAGAGGAGACGGACTACCTCCGTTCAGGGCTATACAAATGGGCAGGTGATGCTTATGAGTTTGATAAGAATGGAACTGGACCTTACATTGAGGTGGTCAACTCCCCAAATAACCCCGACGGCACTCTCCGGGAGGCCGTCGTGAAAAACAGAGGTGATGAAGGGAAGCTCATTCATGACCTTGCCTACTACTGGCCACAGTACACACCAATTATTCGTCCTGCTGATCATGACATTATGACCTTCACATTTTCCAAAAGCACAGGGCATGCTGGCTCACGCATTGGATGGGCTGTTGTTAAGGACAAAGAAGTTGCTAGAAAGATGTCTAAATTCATAGAGATGAGTACACTTGGTGTGTCCAAAGATTCCCAGCAACGAGCTGCAAAGATAATGGGAGTGATTTGTGATGACTATAAGAACTTCAAATCTGATGAGCTCTTTTTTGAGCACACCCGCCGAGTCATGGCTGAGAGATGGGAGAGGCTGAGGCAAGTGGTTGATCGCAATCAAGTTTTCAGTCTGCCCAAGTACCCCAAACGGTACTGCCTTTTCTCTGGAGAGTTGATTGAACCATATCCAGGATTTGCATGGTTGGAGGCCAAGGAGGAGGAGGAGGAGATAGACTCACAGAAGGTTTTACGAGGATGCATAAAGGTACAGGGAAGAACAGGGAGCCGCTTTGGGGTTGCTCAGAAGTATGTTAGGGTCAGCTTGCTCAGCAATGAAGAGGTGTTTAACCAGTTCTTGGAGAGATTATCAACTATTAATTCTATCAGCAATGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

355

Amino Acids

40.32

Weight (kDa)

5.97

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 308
AccB7I CCANNNNNTGG 2 cut(s) 75, 1021
AciI CCGC 2 cut(s) 730, 952
AcoI YGGCCR 2 cut(s) 467, 1057
AcsI RAATTY 2 cut(s) 92, 605
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 5 cut(s) 476, 622, 806, 818, 933
AfiI CCNNNNNNNGG 6 cut(s) 75, 465, 739, 854, 958, 1021
AgsI TTSAA 2 cut(s) 700, 845
AjnI CCWGG 2 cut(s) 217, 853
AleI CACNNNNGTG 1 cut(s) 20
AluBI AGCT 6 cut(s) 48, 184, 442, 656, 712, 987
AluI AGCT 6 cut(s) 48, 184, 442, 656, 712, 987
Alw21I GWGCWC 3 cut(s) 17, 714, 726
Alw26I GTCTC 1 cut(s) 275
Alw44I GTGCAC 1 cut(s) 13
AoxI GGCC 4 cut(s) 408, 467, 873, 1057
ApaLI GTGCAC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 194, 656
ApoI RAATTY 2 cut(s) 92, 605
AseI ATTAAT 1 cut(s) 1041
AspS9I GGNCC 2 cut(s) 224, 353
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 4 cut(s) 34, 55, 332, 440
AvaII GGWCC 2 cut(s) 224, 353
BaeGI GKGCMC 1 cut(s) 17
BalI TGGCCA 2 cut(s) 469, 1059
BanII GRGCYC 2 cut(s) 234, 714
Bbv12I GWGCWC 3 cut(s) 17, 714, 726
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 2 cut(s) 181, 643
BccI CCATC 4 cut(s) 13, 77, 555, 744
BceAI ACGGC 2 cut(s) 395, 409
BciT130I CCWGG 2 cut(s) 219, 855
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 591
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 3 cut(s) 195, 657, 952
BlpI GCTNAGC 1 cut(s) 992
BlsI GCNGC 3 cut(s) 196, 658, 953
Bme1390I CCNGG 3 cut(s) 219, 404, 855
Bme18I GGWCC 2 cut(s) 224, 353
BmgT120I GGNCC 2 cut(s) 224, 353
BmiI GGNNCC 4 cut(s) 35, 87, 175, 950
BmrFI CCNGG 3 cut(s) 219, 404, 855
BmsI GCATC 2 cut(s) 313, 911
BplI GAGNNNNNCTC 2 cut(s) 884, 916
BpmI CTGGAG 1 cut(s) 852
Bpu10I CCTNAGC 2 cut(s) 228, 761
Bpu1102I GCTNAGC 1 cut(s) 992
BpuMI CCSGG 1 cut(s) 404
BsaBI GATNNNNATC 2 cut(s) 23, 780
BsaJI CCNNGG 2 cut(s) 217, 876
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 6 cut(s) 75, 465, 739, 854, 958, 1021
Bse1I ACTGG 3 cut(s) 355, 470, 1015
Bse3DI GCAATG 2 cut(s) 1003, 1060
Bse8I GATNNNNATC 2 cut(s) 23, 780
BseBI CCWGG 2 cut(s) 219, 855
BseDI CCNNGG 2 cut(s) 217, 876
BseGI GGATG 3 cut(s) 151, 566, 926
BseJI GATNNNNATC 2 cut(s) 23, 780
BseLI CCNNNNNNNGG 6 cut(s) 75, 465, 739, 854, 958, 1021
BseMI GCAATG 2 cut(s) 1003, 1060
BseMII CTCAG 5 cut(s) 219, 735, 752, 980, 1006
BseNI ACTGG 3 cut(s) 355, 470, 1015
BseRI GAGGAG 5 cut(s) 293, 896, 899, 902, 905
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 2 cut(s) 181, 643
BseYI CCCAGC 2 cut(s) 180, 645
BshFI GGCC 4 cut(s) 410, 469, 875, 1059
BsiHKAI GWGCWC 3 cut(s) 17, 714, 726
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 6 cut(s) 75, 465, 739, 854, 958, 1021
BsmAI GTCTC 1 cut(s) 275
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 4 cut(s) 410, 469, 875, 1059
Bsp1286I GDGCHC 4 cut(s) 17, 234, 714, 726
Bsp143I GATC 4 cut(s) 24, 148, 499, 775
Bsp1720I GCTNAGC 1 cut(s) 992
BspACI CCGC 2 cut(s) 730, 952
BspANI GGCC 4 cut(s) 410, 469, 875, 1059
BspCNI CTCAG 5 cut(s) 220, 736, 753, 979, 1005
BspHI TCATGA 2 cut(s) 448, 502
BspLI GGNNCC 4 cut(s) 35, 87, 175, 950
BspMI ACCTGC 1 cut(s) 308
BsrDI GCAATG 2 cut(s) 1003, 1060
BsrI ACTGG 3 cut(s) 355, 470, 1015
BssECI CCNNGG 2 cut(s) 217, 876
BssMI GATC 4 cut(s) 24, 148, 499, 775
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 2 cut(s) 219, 855
Bst4CI ACNGT 2 cut(s) 474, 816
Bst6I CTCTTC 1 cut(s) 996
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 543, 547, 989
BstDEI CTNAG 5 cut(s) 228, 744, 761, 966, 992
BstF5I GGATG 3 cut(s) 151, 566, 926
BstKTI GATC 4 cut(s) 27, 151, 502, 778
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 4 cut(s) 24, 148, 499, 775
BstMWI GCNNNNNNNGC 4 cut(s) 54, 203, 323, 993
BstNI CCWGG 2 cut(s) 219, 855
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 3 cut(s) 217, 402, 853
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 181, 643
BsuRI GGCC 4 cut(s) 410, 469, 875, 1059
BtsCI GGATG 3 cut(s) 151, 566, 926
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 3 cut(s) 543, 547, 989
CciI TCATGA 2 cut(s) 448, 502
Cfr13I GGNCC 2 cut(s) 224, 353
Csp6I GTAC 5 cut(s) 475, 621, 805, 817, 932
CviAII CATG 5 cut(s) 449, 503, 542, 739, 864
CviQI GTAC 5 cut(s) 475, 621, 805, 817, 932
DdeI CTNAG 5 cut(s) 228, 744, 761, 966, 992
DpnI GATC 4 cut(s) 26, 150, 501, 777
DpnII GATC 4 cut(s) 24, 148, 499, 775
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 2 cut(s) 467, 1057
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 876
Eco24I GRGCYC 2 cut(s) 234, 714
Eco47I GGWCC 2 cut(s) 224, 353
Eco53kI GAGCTC 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 712
EcoRII CCWGG 2 cut(s) 217, 853
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 1 cut(s) 926
EcoT38I GRGCYC 2 cut(s) 234, 714
ErhI CCWWGG 1 cut(s) 876
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 5 cut(s) 452, 506, 545, 742, 867
FaqI GGGAC 1 cut(s) 181
FatI CATG 5 cut(s) 448, 502, 541, 738, 863
FauI CCCGC 1 cut(s) 737
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 195, 657, 952
FokI GGATG 3 cut(s) 158, 573, 933
FriOI GRGCYC 2 cut(s) 234, 714
Fsp4HI GCNGC 3 cut(s) 195, 657, 952
FspBI CTAG 1 cut(s) 591
GluI GCNGC 3 cut(s) 195, 657, 952
GsaI CCCAGC 2 cut(s) 184, 649
GsuI CTGGAG 1 cut(s) 852
HaeIII GGCC 4 cut(s) 410, 469, 875, 1059
HapII CCGG 1 cut(s) 403
Hin1II CATG 5 cut(s) 452, 506, 545, 742, 867
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 3 cut(s) 641, 735, 899
HpaII CCGG 1 cut(s) 403
HphI GGTGA 4 cut(s) 34, 55, 332, 440
Hpy166II GTNNAC 4 cut(s) 15, 373, 477, 623
Hpy188I TCNGA 2 cut(s) 706, 969
Hpy188III TCNNGA 7 cut(s) 98, 227, 275, 415, 449, 503, 831
Hpy8I GTNNAC 4 cut(s) 15, 373, 477, 623
Hpy99I CGWCG 2 cut(s) 395, 416
HpyAV CCTTC 3 cut(s) 428, 526, 901
HpyCH4III ACNGT 2 cut(s) 474, 816
HpyCH4V TGCA 5 cut(s) 15, 137, 659, 863, 924
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 203, 323, 993
HpyF3I CTNAG 5 cut(s) 228, 744, 761, 966, 992
Hsp92II CATG 5 cut(s) 452, 506, 545, 742, 867
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 4 cut(s) 24, 148, 499, 775
LmnI GCTCC 4 cut(s) 33, 85, 179, 948
Lsp1109I GCAGC 2 cut(s) 181, 643
LweI GCATC 2 cut(s) 313, 911
MaeI CTAG 1 cut(s) 591
MalI GATC 4 cut(s) 26, 150, 501, 777
MboI GATC 4 cut(s) 24, 148, 499, 775
MboII GAAGA 2 cut(s) 951, 1013
MhlI GDGCHC 4 cut(s) 17, 234, 714, 726
MlsI TGGCCA 2 cut(s) 469, 1059
MluCI AATT 4 cut(s) 92, 483, 605, 1042
MluNI TGGCCA 2 cut(s) 469, 1059
MlyI GAGTC 2 cut(s) 744, 893
MmeI TCCRAC 2 cut(s) 109, 849
Mox20I TGGCCA 2 cut(s) 469, 1059
Mph1103I ATGCAT 1 cut(s) 926
MscI TGGCCA 2 cut(s) 469, 1059
MseI TTAA 4 cut(s) 573, 1011, 1041, 1063
MslI CAYNNNNRTG 3 cut(s) 20, 365, 614
Msp20I TGGCCA 2 cut(s) 469, 1059
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 3 cut(s) 219, 404, 855
MvaI CCWGG 2 cut(s) 219, 855
MwoI GCNNNNNNNGC 4 cut(s) 54, 203, 323, 993
NciI CCSGG 1 cut(s) 404
NdeII GATC 4 cut(s) 24, 148, 499, 775
NlaIII CATG 5 cut(s) 452, 506, 545, 742, 867
NlaIV GGNNCC 4 cut(s) 35, 87, 175, 950
NmeAIII GCCGAG 2 cut(s) 245, 758
NsiI ATGCAT 1 cut(s) 926
NspI RCATGY 1 cut(s) 545
OliI CACNNNNGTG 1 cut(s) 20
PaeI GCATGC 1 cut(s) 545
PagI TCATGA 2 cut(s) 448, 502
PaqCI CACCTGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 641
PflMI CCANNNNNTGG 2 cut(s) 75, 1021
PfoI TCCNGGA 2 cut(s) 402, 853
PkrI GCNGC 3 cut(s) 196, 658, 953
PleI GAGTC 2 cut(s) 743, 893
PpsI GAGTC 2 cut(s) 743, 893
PshBI ATTAAT 1 cut(s) 1041
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 217, 853
PspFI CCCAGC 2 cut(s) 180, 645
PspGI CCWGG 2 cut(s) 217, 853
PspN4I GGNNCC 4 cut(s) 35, 87, 175, 950
PspPI GGNCC 2 cut(s) 224, 353
RsaI GTAC 5 cut(s) 476, 622, 806, 818, 933
RsaNI GTAC 5 cut(s) 475, 621, 805, 817, 932
RseI CAYNNNNRTG 3 cut(s) 20, 365, 614
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 573, 1011, 1041, 1063
SatI GCNGC 3 cut(s) 195, 657, 952
Sau3AI GATC 4 cut(s) 24, 148, 499, 775
Sau96I GGNCC 2 cut(s) 224, 353
SchI GAGTC 2 cut(s) 744, 893
ScrFI CCNGG 3 cut(s) 219, 404, 855
SduI GDGCHC 4 cut(s) 17, 234, 714, 726
SfaNI GCATC 2 cut(s) 313, 911
SinI GGWCC 2 cut(s) 224, 353
SmiMI CAYNNNNRTG 3 cut(s) 20, 365, 614
SphI GCATGC 1 cut(s) 545
Sse9I AATT 4 cut(s) 92, 483, 605, 1042
SsiI CCGC 2 cut(s) 730, 952
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 217, 402, 853
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 2 cut(s) 474, 816
TasI AATT 4 cut(s) 92, 483, 605, 1042
TatI WGTACW 2 cut(s) 474, 620
TauI GCSGC 1 cut(s) 954
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 4 cut(s) 573, 1011, 1041, 1063
Tru9I TTAA 4 cut(s) 573, 1011, 1041, 1063
TscAI CASTG 1 cut(s) 144
TseI GCWGC 2 cut(s) 194, 656
TspDTI ATGAA 5 cut(s) 107, 437, 447, 598, 1014
TspGWI ACGGA 2 cut(s) 284, 299
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 2 cut(s) 75, 1021
VneI GTGCAC 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 224, 353
VspI ATTAAT 1 cut(s) 1041
XapI RAATTY 2 cut(s) 92, 605
XceI RCATGY 1 cut(s) 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XspI CTAG 1 cut(s) 591
Zsp2I ATGCAT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.