Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003792

Physical Location & Seq

Genomic Coordinates Reverse (-)

8553313 .. 8556750

Gene Structure 3438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGGTGATATGCAAGTTGGTGTTGCCACTATTGACGATAAGGGTTTTTATGGTTTGATGGAGGATACACAAGTAAAGGCGGTGGCTTCATCGAACCCGAGCTTGCAAGTGTCGGTTTCTTTTGGTAGGTTTGAGAATGATTCACTTTCATGGGAGAAGTTCTCAGCTTTCTCTCCAAATAAGTACTTGGAGGAAGTTGGCAAGTGTGCTACTCCAGGATCAGTTGCTCAAAAGAAGGCTTATTTTGAAGCTCATTATAAGAAGATTGCTGAGAGGAAAGCTGAGATTATAGATCAGGAGAAACTAATGGACGAGAACGCATCTTTTAGATCTATTGTTTCAGATCAGGAGAGTGTGGAATGCGAAAATGGCGGGGTGGTGGTAGAGTCTGAGGTTGATAATGGTTGTAATGGGCAATTATCTTGTGATGAAGATAAGCATGTGACTGACATTACTGCTAAAGTGAATCAAGTGAGTATTGATGAGAGTAATGAAGAAACTATTGTTGTCAAGGAATGTCAAAGCTCGGTTGATACGGTGAAAGACGAAGTCAAGGACAGTGTGGATAGTCCAGTATTGGAGAAAGCAGAGGAGATTGCTCTTGAGGAAGAGAAGATAGAAATGGTCGTCCATGTGCAGGAGAGATCAGAAGAGGTTTTACAAGAGGATGAGAAAGAAGAGACAGAAGTAAGAGAAGAAGTGAGAGACGACATTTCATTACAAAATGATACTGTGGATGCAAATGAAACGACGAAGAAGGTGGTGAAGAAAGAGAAAAAGCCTAATCTAATCAAGAAGAATGATGGAAATGTGCGGATTAATCCTACGAGAGGCTCTCTTAAGCCTAATCAGGTGGGGGGAAAACCGGAAACTAACAAAACTGTAACGAGTAGGAAAACTCCACCGAGCAAGGAGATGAAAAACATGATGAAAGCAACAAAGAAACCAGCAGCACCAATGTCAAAATCCCCACAAGGGTTTGCAACTCCAAGAGTGTACAAGCCAGCTCCAACAAAAACTTCATTGTCTACATCTCACTCTTCGTTGAAGAAGGAAAAGGTCTCGCCTTTACTGAGTAAAAAACAAACCGCTCCAAAGTCATTGCATATCTCTATGAATCTGGATCCACCTGCTTCCGATCCTACTGCTCTTCCAAGCACTAGAAAATCATTGATCATGGAGCGAATGGGAGATAAAGACATTGTCAAACGTGCATTCAAATCATTTCAAAAGAGTTTCGACTTCAAGTCTTCTGTCGACGGGCTAAACACAGCAGTAAAGCAGAATCCTGCAAAGCCAACAATTATTCCGTCAGTAGCTACTCGTCAGAAGGAAAATGGCAGGCCTACAAAAGCAAGTAGCATGGAGAAGAGAAGTGGTACTACCGCCTATCGTTCTCCATCTCATGGACTCAAAAGCAATGAAACCGCTGAGAAACAACAAAAGGAGATTTCCAAGTCTGGTGCAAGACCTTTAGAGAAGACACGCTTGCAGAAGAACCCAAAGGCAGGAGTGATTGATGCCAAAACGCGGAGGGACTCTCTTAATCCGAAAGCAAAACCTGTGCAGGGTTCTCTTCCAATGCGGACCGTATCGAAAAGCTCTTTAGACAAAGTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

540

Amino Acids

59.55

Weight (kDa)

8.85

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24160 AT1G24160 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100
fragaria_vesca	FvH4_4g35241 FvH4_4g35241 FvH4_4g35241
malus_domestica	MD13G1085000.v1.1 MD16G1084200.v1.1
prunus_persica	Prupe.1G261800_v2.0.a1
pyrus_communis	pycom13g07350 pycom16g07320
rosa_chinensis	RchiOBHm_Chr4g0444851
rosa_laevigata	RLG00000005795
rosa_multiflora	Rmu_sc0006845.1_g000008 Rmu_sc0034891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007070 Rroxscaffold_5G00385340
rosa_rugosa	Rorug04G0355500 Rorug04G0355500 Rorug04G0355500 Rorug04G0355600 Rorug04G0355600
rosa_samantha	Rh1BG148900 Rh4AG417100 Rh4BG428900 Rh4CG443500 Rh4DG424700 Rh5BG510000
rosa_wichuraiana	Rw4G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AarI	CACCTGC	1 cut(s)	1138
Acc36I	ACCTGC	1 cut(s)	1138
AccB7I	CCANNNNNTGG	1 cut(s)	1406
AccBSI	CCGCTC	1 cut(s)	1091
AccI	GTMKAC	2 cut(s)	1028, 1257
AccII	CGCG	1 cut(s)	1531
AciI	CCGC	8 cut(s)	80, 372, 814, 1089, 1386, 1428, 1531, 1585
AclWI	GGATC	4 cut(s)	226, 1118, 1131, 1133
AfaI	GTAC	3 cut(s)	185, 998, 1381
AfiI	CCNNNNNNNGG	7 cut(s)	637, 830, 975, 1406, 1508, 1530, 1568
AflII	CTTAAG	1 cut(s)	839
AgsI	TTSAA	5 cut(s)	248, 1048, 1219, 1229, 1246
AhdI	GACNNNNNGTC	1 cut(s)	1246
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	1003, 1035
AluBI	AGCT	8 cut(s)	102, 167, 251, 281, 525, 1007, 1319, 1602
AluI	AGCT	8 cut(s)	102, 167, 251, 281, 525, 1007, 1319, 1602
Alw26I	GTCTC	3 cut(s)	674, 699, 1066
AlwI	GGATC	4 cut(s)	226, 1118, 1131, 1133
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	1343
ApeKI	GCWGC	1 cut(s)	950
AseI	ATTAAT	1 cut(s)	819
AspS9I	GGNCC	1 cut(s)	1587
AsuHPI	GGTGA	3 cut(s)	17, 550, 775
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	1587
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BamHI	GGATCC	1 cut(s)	1123
BarI	GAAGNNNNNNTAC	4 cut(s)	642, 674, 1366, 1398
BbsI	GAAGAC	2 cut(s)	1242, 1487
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	3 cut(s)	52, 797, 1408
BcgI	CGANNNNNNTGC	2 cut(s)	1127, 1161
BciT130I	CCWGG	1 cut(s)	216
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	1173
BcoDI	GTCTC	3 cut(s)	674, 699, 1066
BfaI	CTAG	1 cut(s)	1161
BfrI	CTTAAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	1138
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	1587
BmeRI	GACNNNNNGTC	1 cut(s)	1246
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	1587
BmiI	GGNNCC	1 cut(s)	1125
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	3 cut(s)	329, 727, 1510
BpiI	GAAGAC	2 cut(s)	1242, 1487
BplI	GAGNNNNNCTC	6 cut(s)	146, 178, 820, 852, 1525, 1557
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	623
BsaI	GGTCTC	1 cut(s)	1066
BsaWI	WCCGGW	1 cut(s)	865
Bsc4I	CCNNNNNNNGG	7 cut(s)	637, 830, 975, 1406, 1508, 1530, 1568
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	2 cut(s)	1100, 1426
BseBI	CCWGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	673, 742
BseLI	CCNNNNNNNGG	7 cut(s)	637, 830, 975, 1406, 1508, 1530, 1568
BseMI	GCAATG	2 cut(s)	1100, 1426
BseMII	CTCAG	6 cut(s)	177, 261, 273, 381, 1064, 1422
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	962
BsgI	GTGCAG	2 cut(s)	656, 1586
Bsh1236I	CGCG	1 cut(s)	1531
BshFI	GGCC	1 cut(s)	1345
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	866
BslFI	GGGAC	1 cut(s)	1550
BslI	CCNNNNNNNGG	7 cut(s)	637, 830, 975, 1406, 1508, 1530, 1568
BsmAI	GTCTC	3 cut(s)	674, 699, 1066
BsmBI	CGTCTC	1 cut(s)	699
BsmFI	GGGAC	1 cut(s)	1550
BsmI	GAATGC	2 cut(s)	365, 1214
BsnI	GGCC	1 cut(s)	1345
Bso31I	GGTCTC	1 cut(s)	1066
BsoBI	CYCGRG	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	996
Bsp143I	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
BspACI	CCGC	8 cut(s)	80, 372, 814, 1089, 1386, 1428, 1531, 1585
BspANI	GGCC	1 cut(s)	1345
BspCNI	CTCAG	6 cut(s)	176, 262, 274, 382, 1065, 1423
BspFNI	CGCG	1 cut(s)	1531
BspLI	GGNNCC	1 cut(s)	1125
BspMI	ACCTGC	1 cut(s)	1138
BspPI	GGATC	4 cut(s)	226, 1118, 1131, 1133
BspQI	GCTCTTC	1 cut(s)	1155
BspTI	CTTAAG	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	1066
BsrBI	CCGCTC	1 cut(s)	1091
BsrDI	GCAATG	2 cut(s)	1100, 1426
BsrGI	TGTACA	1 cut(s)	996
BsrI	ACTGG	1 cut(s)	572
BssMI	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	5 cut(s)	538, 560, 733, 883, 1591
Bst6I	CTCTTC	7 cut(s)	603, 645, 672, 1045, 1155, 1364, 1581
BstAFI	CTTAAG	1 cut(s)	839
BstAUI	TGTACA	1 cut(s)	996
BstC8I	GCNNGC	4 cut(s)	104, 1005, 1343, 1490
BstDEI	CTNAG	6 cut(s)	163, 270, 282, 390, 1073, 1431
BstENI	CCTNNNNNAGG	1 cut(s)	828
BstF5I	GGATG	2 cut(s)	673, 742
BstFNI	CGCG	1 cut(s)	1531
BstKTI	GATC	8 cut(s)	221, 295, 332, 346, 647, 1126, 1141, 1176
BstMAI	GTCTC	3 cut(s)	674, 699, 1066
BstMBI	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	1531
BstV1I	GCAGC	1 cut(s)	962
BstV2I	GAAGAC	2 cut(s)	1242, 1487
BstX2I	RGATCY	2 cut(s)	329, 1123
BstYI	RGATCY	2 cut(s)	329, 1123
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	1345
BtsCI	GGATG	2 cut(s)	673, 742
BtsIMutI	CAGTG	1 cut(s)	565
BveI	ACCTGC	1 cut(s)	1138
Cac8I	GCNNGC	4 cut(s)	104, 1005, 1343, 1490
Cfr13I	GGNCC	1 cut(s)	1587
CpoI	CGGWCCG	1 cut(s)	1587
Csp6I	GTAC	3 cut(s)	184, 997, 1380
CspI	CGGWCCG	1 cut(s)	1587
CviAII	CATG	7 cut(s)	150, 440, 632, 925, 1177, 1363, 1406
CviQI	GTAC	3 cut(s)	184, 997, 1380
DdeI	CTNAG	6 cut(s)	163, 270, 282, 390, 1073, 1431
DpnI	GATC	8 cut(s)	220, 294, 331, 345, 646, 1125, 1140, 1175
DpnII	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
DriI	GACNNNNNGTC	1 cut(s)	1246
Eam1104I	CTCTTC	7 cut(s)	603, 645, 672, 1045, 1155, 1364, 1581
Eam1105I	GACNNNNNGTC	1 cut(s)	1246
EarI	CTCTTC	7 cut(s)	603, 645, 672, 1045, 1155, 1364, 1581
Eco147I	AGGCCT	1 cut(s)	1345
Eco31I	GGTCTC	1 cut(s)	1066
Eco47I	GGWCC	1 cut(s)	1587
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	828
EcoRII	CCWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	699
FaeI	CATG	7 cut(s)	153, 443, 635, 928, 1180, 1366, 1409
FalI	AAGNNNNNCTT	2 cut(s)	1472, 1504
FaqI	GGGAC	1 cut(s)	1550
FatI	CATG	7 cut(s)	149, 439, 631, 924, 1176, 1362, 1405
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	1173
FblI	GTMKAC	2 cut(s)	1028, 1257
Fnu4HI	GCNGC	1 cut(s)	951
FokI	GGATG	2 cut(s)	680, 749
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	1 cut(s)	1161
GluI	GCNGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	1345
HapII	CCGG	1 cut(s)	866
Hin1II	CATG	7 cut(s)	153, 443, 635, 928, 1180, 1366, 1409
HincII	GTYRAC	1 cut(s)	1258
HindII	GTYRAC	1 cut(s)	1258
HinfI	GANTC	7 cut(s)	140, 386, 466, 1117, 1285, 1410, 1538
HpaII	CCGG	1 cut(s)	866
HphI	GGTGA	3 cut(s)	17, 550, 775
Hpy166II	GTNNAC	3 cut(s)	997, 1029, 1258
Hpy188I	TCNGA	6 cut(s)	343, 391, 649, 1138, 1329, 1551
Hpy188III	TCNNGA	5 cut(s)	296, 347, 602, 793, 1121
Hpy8I	GTNNAC	3 cut(s)	997, 1029, 1258
Hpy99I	CGWCG	2 cut(s)	754, 1262
HpyAV	CCTTC	4 cut(s)	229, 751, 1045, 1324
HpyCH4III	ACNGT	5 cut(s)	538, 560, 733, 883, 1591
HpyCH4IV	ACGT	1 cut(s)	1210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	6 cut(s)	163, 270, 282, 390, 1073, 1431
HpySE526I	ACGT	1 cut(s)	1210
Hsp92II	CATG	7 cut(s)	153, 443, 635, 928, 1180, 1366, 1409
Ksp22I	TGATCA	1 cut(s)	1173
Kzo9I	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
LguI	GCTCTTC	1 cut(s)	1155
LmnI	GCTCC	3 cut(s)	1012, 1096, 1180
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	3 cut(s)	329, 727, 1510
MaeI	CTAG	1 cut(s)	1161
MaeII	ACGT	1 cut(s)	1210
MaeIII	GTNAC	2 cut(s)	442, 883
MalI	GATC	8 cut(s)	220, 294, 331, 345, 646, 1125, 1140, 1175
MbiI	CCGCTC	1 cut(s)	1091
MboI	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
MflI	RGATCY	2 cut(s)	329, 1123
MluCI	AATT	2 cut(s)	416, 1302
MlyI	GAGTC	3 cut(s)	395, 1404, 1532
MmeI	TCCRAC	1 cut(s)	1034
MseI	TTAA	3 cut(s)	819, 840, 1545
MslI	CAYNNNNRTG	1 cut(s)	148
MspA1I	CMGCKG	1 cut(s)	1430
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	2 cut(s)	365, 1214
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	1531
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeII	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
NlaIII	CATG	7 cut(s)	153, 443, 635, 928, 1180, 1366, 1409
NlaIV	GGNNCC	1 cut(s)	1125
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	1138
PceI	AGGCCT	1 cut(s)	1345
PciSI	GCTCTTC	1 cut(s)	1155
PctI	GAATGC	2 cut(s)	365, 1214
PfeI	GAWTC	4 cut(s)	140, 466, 1117, 1285
PflFI	GACNNNGTC	2 cut(s)	548, 1202
PflMI	CCANNNNNTGG	1 cut(s)	1406
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	3 cut(s)	394, 1404, 1532
PpsI	GAGTC	3 cut(s)	394, 1404, 1532
PshBI	ATTAAT	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	1125
PspPI	GGNCC	1 cut(s)	1587
PsuI	RGATCY	2 cut(s)	329, 1123
PsyI	GACNNNGTC	2 cut(s)	548, 1202
RsaI	GTAC	3 cut(s)	185, 998, 1381
RsaNI	GTAC	3 cut(s)	184, 997, 1380
RseI	CAYNNNNRTG	1 cut(s)	148
Rsr2I	CGGWCCG	1 cut(s)	1587
RsrII	CGGWCCG	1 cut(s)	1587
SalI	GTCGAC	1 cut(s)	1256
SapI	GCTCTTC	1 cut(s)	1155
SaqAI	TTAA	3 cut(s)	819, 840, 1545
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	8 cut(s)	218, 292, 329, 343, 644, 1123, 1138, 1173
Sau96I	GGNCC	1 cut(s)	1587
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	3 cut(s)	395, 1404, 1532
ScrFI	CCNGG	1 cut(s)	216
SfaNI	GCATC	3 cut(s)	329, 727, 1510
SinI	GGWCC	1 cut(s)	1587
SmiMI	CAYNNNNRTG	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	602, 839
SmoI	CTYRAG	2 cut(s)	602, 839
Sse9I	AATT	2 cut(s)	416, 1302
SseBI	AGGCCT	1 cut(s)	1345
SsiI	CCGC	8 cut(s)	80, 372, 814, 1089, 1386, 1428, 1531, 1585
SspMI	CTAG	1 cut(s)	1161
StuI	AGGCCT	1 cut(s)	1345
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	5 cut(s)	538, 560, 733, 883, 1591
TaiI	ACGT	1 cut(s)	1213
TaqI	TCGA	4 cut(s)	92, 1239, 1257, 1595
TasI	AATT	2 cut(s)	416, 1302
TatI	WGTACW	2 cut(s)	183, 996
TfiI	GAWTC	4 cut(s)	140, 466, 1117, 1285
Tru1I	TTAA	3 cut(s)	819, 840, 1545
Tru9I	TTAA	3 cut(s)	819, 840, 1545
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	1 cut(s)	442
TspGWI	ACGGA	1 cut(s)	1299
TspRI	CASTG	1 cut(s)	565
Tth111I	GACNNNGTC	2 cut(s)	548, 1202
Van91I	CCANNNNNTGG	1 cut(s)	1406
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	1587
VspI	ATTAAT	1 cut(s)	819
XagI	CCTNNNNNAGG	1 cut(s)	828
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	2 cut(s)	1028, 1257
XspI	CTAG	1 cut(s)	1161
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.