Rroxscaffold_5G00385340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003792
Physical Location & Seq
Reverse (-)
64423330 .. 64427006
3677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385340.1

Sequence Viewer

Length: 1623 bp
ATGGGTGAATCAATAGTGGGTTTTCCAAAAGATGCTGATAAGATGGGAGAGATAGCGGGTACAGATTCATCAAATCCTTCTCTGGAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATTCATTATCTTGGGAGAAATGGTCGGCATTTTCGCCAAATAAGTACTTGGAAGAAGTTGAGAAGTGTGCTACTCCTGGTTCGGTAGCTCAGAAAAGGGCTTATTTTGAAGCTCATTACAAGAGGATAGCTGCTCGAAAAGCCGAGGAGCTTCTGGAACAAGAGAAGCAAATGCAAGATGATGATCCCTTAAAGTCAGATGATCAAAATAATGGAGATCAGATCTGTTGTGGTACGGATTATGGAATTGATGTAGCTACCAGTCAAACTAGTGCTCAAGCAAATAGTCAAGAGCCCAATATAGAGAATGGGATGAGCAGTACTCATGTGGAACATCTCAAGGAGGATGATGAGGATGTTTTCACTATGGAATGTCAAACATCATCGATTGAGGGTAGAAGAATAGAGGAAACTGATAGCGGAGTGGTTAGTCCGAAGACTCCAAAGCTGAACAGACCAGAAGAACTTGTTTTGGTAAAAGAAGTGGAAACCATCACTGCTGACACTCAAGAAACAATACAGGAAGTTCCAAAGACTTTGGACAGTGATACAGGCAATGCTCCAGAAGTTAAAGAGGAAAAAGCGAGATTCGATCTTCAGAAGAGATCTCAGAAGGTTACTCCAGTGAGCAAGGAGAGGACAGTGGCAAAGGCCAAGAAGAAATCAATTTCACCAATGTCTAAAACACCTCAGAATCCGACCCCTAGAGTGTCAAAGTTACCACAGAATTCCACCCCTAGAGTGTCAAAGATACCGCAGAATACTACCCCTAGAGTGTCAAAGATACTGCAGAATACCACCCCCAGTGTGTCAAAGCCAATATCAGCTTCTATCGGAGCAAAATCTGCACCAAGATCCTCAGTAACGAAGGCCAATGGTTCATCTTTAACTAGGAGCACAAATCAGTCAAGTGAAAAAACCAAGAAAGTTCCTCCTAAATCTCTGCACATGTCACTCAGTTTCAATCCTAAAAAGTCTGATTCAGCTACAGAAACTGTGGTTACAGCTAGAAAATCTTTGATTATGGAGCAAATGGGTGATAAGGACATTGTCAAACGAGCATTCAAGACATTTCAAAACAGTGTCAACCAATTGAAATCCTCTAATGAAGAGAAACCTTCAGCACCAATGCGGCTCCCTACAAATTCGAAAGAACCAAAGATTTCCACTCCTATGCCTCTGCCAAAAGACAATAGAGGGTCACTCAAAACGAGTTATCAGGATAAAAGAAATGCCAAGGCTGCTCCATCATCTTTTGGCCTGAGAAGTGAAGAAAGAGCAGAGAAACGGAAGGAGTTAACAAACAAATTGGCAAAACCCAATGCCAGAGATGCAGAGAGAGCACACTTCCAACCAAAGTCAAAGGAGCAAAAGGAGGCAGAGATAAAAAAGCTAAGACAGAGTCTTAAGTTCAAGGCTACACCAACGCCTGATTCTTATAGGGGACAAAAGTTTTCGAAAAGTACTCTAGAAAAGGAGGGTCCTAAGAAAGAAACGCTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

540

Amino Acids

59.92

Weight (kDa)

9.36

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 458 - 527 3.9e-13 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 56, 537, 872, 1249
AclWI GGATC 2 cut(s) 296, 966
AcsI RAATTY 2 cut(s) 844, 1261
AcuI CTGAAG 2 cut(s) 698, 1221
AfaI GTAC 5 cut(s) 61, 164, 352, 439, 1582
AflII CTTAAG 1 cut(s) 1523
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 6 cut(s) 227, 1081, 1183, 1193, 1213, 1531
AhlI ACTAGT 1 cut(s) 386
AjnI CCWGG 1 cut(s) 193
AjuI GAANNNNNNNTTGG 4 cut(s) 928, 960, 1534, 1566
Alw21I GWGCWC 3 cut(s) 394, 1016, 1462
AlwI GGATC 2 cut(s) 296, 966
AlwNI CAGNNNCTG 1 cut(s) 1112
AoxI GGCC 3 cut(s) 768, 987, 1375
ApeKI GCWGC 2 cut(s) 248, 1358
ApoI RAATTY 2 cut(s) 844, 1261
Asp700I GAANNNNTTC 1 cut(s) 1614
AspS9I GGNCC 1 cut(s) 1598
AsuHPI GGTGA 3 cut(s) 17, 780, 1166
AsuII TTCGAA 2 cut(s) 1265, 1574
AvaII GGWCC 1 cut(s) 1598
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 3 cut(s) 394, 1016, 1462
BbvI GCAGC 2 cut(s) 235, 1345
BccI CCATC 3 cut(s) 37, 617, 1372
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 7 cut(s) 387, 822, 855, 888, 1008, 1125, 1586
BfmI CTRYAG 2 cut(s) 905, 1104
BfrI CTTAAG 1 cut(s) 1523
BglII AGATCT 2 cut(s) 339, 722
BisI GCNGC 3 cut(s) 249, 1250, 1359
BlsI GCNGC 3 cut(s) 250, 1251, 1360
BmcAI AGTACT 3 cut(s) 164, 439, 1582
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 1598
BmgT120I GGNCC 1 cut(s) 1598
BmiI GGNNCC 2 cut(s) 1253, 1599
BmrFI CCNGG 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 915
BmsI GCATC 2 cut(s) 22, 1438
BmuI ACTGGG 1 cut(s) 915
BpiI GAAGAC 1 cut(s) 560
BplI GAGNNNNNCTC 4 cut(s) 424, 456, 1305, 1337
BpmI CTGGAG 2 cut(s) 663, 723
Bpu14I TTCGAA 2 cut(s) 1265, 1574
BpuEI CTTGAG 3 cut(s) 378, 440, 609
Bsa29I ATCGAT 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 261, 1353
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 3 cut(s) 378, 740, 921
Bse3DI GCAATG 1 cut(s) 679
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 261, 1353
BseGI GGATG 3 cut(s) 435, 469, 478
BseJI GATNNNNATC 1 cut(s) 300
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 6 cut(s) 221, 740, 821, 990, 1087, 1370
BseNI ACTGG 3 cut(s) 378, 740, 921
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 235, 1345
BsgI GTGCAG 2 cut(s) 948, 1046
BshFI GGCC 3 cut(s) 770, 989, 1377
BshVI ATCGAT 1 cut(s) 503
BsiHKAI GWGCWC 3 cut(s) 394, 1016, 1462
BslFI GGGAC 1 cut(s) 1575
BsmFI GGGAC 1 cut(s) 1575
BsmI GAATGC 1 cut(s) 1178
BsnI GGCC 3 cut(s) 770, 989, 1377
Bsp119I TTCGAA 2 cut(s) 1265, 1574
Bsp1286I GDGCHC 4 cut(s) 394, 414, 1016, 1462
Bsp143I GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
BspACI CCGC 4 cut(s) 56, 537, 872, 1249
BspANI GGCC 3 cut(s) 770, 989, 1377
BspCNI CTCAG 6 cut(s) 220, 739, 820, 989, 1086, 1371
BspDI ATCGAT 1 cut(s) 503
BspLI GGNNCC 2 cut(s) 1253, 1599
BspMAI CTGCAG 1 cut(s) 909
BspPI GGATC 2 cut(s) 296, 966
BspT104I TTCGAA 2 cut(s) 1265, 1574
BspTI CTTAAG 1 cut(s) 1523
BsrDI GCAATG 1 cut(s) 679
BsrI ACTGG 3 cut(s) 378, 740, 921
BssECI CCNNGG 2 cut(s) 261, 1353
BssMI GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
BssT1I CCWWGG 1 cut(s) 1353
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 4 cut(s) 662, 760, 1114, 1199
Bst6I CTCTTC 2 cut(s) 713, 1221
BstAFI CTTAAG 1 cut(s) 1523
BstAPI GCANNNNNTGC 1 cut(s) 962
BstBI TTCGAA 2 cut(s) 1265, 1574
BstDEI CTNAG 8 cut(s) 207, 726, 807, 976, 1073, 1379, 1511, 1602
BstF5I GGATG 3 cut(s) 435, 469, 478
BstKTI GATC 7 cut(s) 304, 322, 337, 342, 712, 725, 974
BstMBI GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
BstMWI GCNNNNNNNGC 5 cut(s) 257, 962, 1358, 1448, 1457
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 2 cut(s) 905, 1104
BstV1I GCAGC 2 cut(s) 235, 1345
BstV2I GAAGAC 1 cut(s) 560
BstX2I RGATCY 3 cut(s) 339, 722, 971
BstYI RGATCY 3 cut(s) 339, 722, 971
Bsu15I ATCGAT 1 cut(s) 503
BsuRI GGCC 3 cut(s) 770, 989, 1377
BsuTUI ATCGAT 1 cut(s) 503
BtsCI GGATG 3 cut(s) 435, 469, 478
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 6 cut(s) 612, 667, 747, 765, 928, 1204
CaiI CAGNNNCTG 1 cut(s) 1112
Cfr13I GGNCC 1 cut(s) 1598
ClaI ATCGAT 1 cut(s) 503
Csp6I GTAC 5 cut(s) 60, 163, 351, 438, 1581
CviAII CATG 2 cut(s) 443, 1066
CviQI GTAC 5 cut(s) 60, 163, 351, 438, 1581
DdeI CTNAG 8 cut(s) 207, 726, 807, 976, 1073, 1379, 1511, 1602
DpnI GATC 7 cut(s) 303, 321, 336, 341, 711, 724, 973
DpnII GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
Eam1104I CTCTTC 2 cut(s) 713, 1221
EarI CTCTTC 2 cut(s) 713, 1221
Eco130I CCWWGG 1 cut(s) 1353
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 1598
Eco57I CTGAAG 2 cut(s) 698, 1221
EcoO109I RGGNCCY 1 cut(s) 1598
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 1353
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 1353
FaeI CATG 2 cut(s) 446, 1069
FaiI YATR 8 cut(s) 360, 419, 444, 485, 1067, 1142, 1292, 1557
FalI AAGNNNNNCTT 1 cut(s) 1599
FaqI GGGAC 1 cut(s) 1575
FatI CATG 2 cut(s) 442, 1065
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 249, 1250, 1359
FokI GGATG 3 cut(s) 442, 476, 485
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 3 cut(s) 249, 1250, 1359
FspBI CTAG 7 cut(s) 387, 822, 855, 888, 1008, 1125, 1586
GluI GCNGC 3 cut(s) 249, 1250, 1359
GsuI CTGGAG 2 cut(s) 663, 723
HaeIII GGCC 3 cut(s) 770, 989, 1377
Hin1II CATG 2 cut(s) 446, 1069
HincII GTYRAC 2 cut(s) 1204, 1416
HindII GTYRAC 2 cut(s) 1204, 1416
HinfI GANTC 9 cut(s) 8, 65, 119, 556, 705, 811, 1097, 1519, 1550
HpaI GTTAAC 1 cut(s) 1416
HphI GGTGA 3 cut(s) 17, 780, 1166
Hpy166II GTNNAC 2 cut(s) 1204, 1416
Hpy188III TCNNGA 8 cut(s) 83, 272, 407, 626, 680, 1183, 1337, 1586
Hpy8I GTNNAC 2 cut(s) 1204, 1416
HpyAV CCTTC 5 cut(s) 87, 724, 979, 1245, 1402
HpyCH4III ACNGT 4 cut(s) 662, 760, 1114, 1199
HpyCH4V TGCA 5 cut(s) 292, 907, 965, 1063, 1451
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 962, 1358, 1448, 1457
HpyF3I CTNAG 8 cut(s) 207, 726, 807, 976, 1073, 1379, 1511, 1602
Hsp92II CATG 2 cut(s) 446, 1069
Ksp22I TGATCA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 1416
Kzo9I GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
LmnI GCTCC 8 cut(s) 265, 682, 953, 1011, 1144, 1257, 1366, 1483
Lsp1109I GCAGC 2 cut(s) 235, 1345
LweI GCATC 2 cut(s) 22, 1438
MaeI CTAG 7 cut(s) 387, 822, 855, 888, 1008, 1125, 1586
MaeIII GTNAC 6 cut(s) 733, 834, 979, 1068, 1117, 1317
MalI GATC 7 cut(s) 303, 321, 336, 341, 711, 724, 973
MboI GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
MboII GAAGA 9 cut(s) 182, 528, 565, 590, 704, 730, 787, 1238, 1400
MfeI CAATTG 1 cut(s) 1208
MflI RGATCY 3 cut(s) 339, 722, 971
MhlI GDGCHC 4 cut(s) 394, 414, 1016, 1462
MluCI AATT 6 cut(s) 363, 783, 844, 1208, 1261, 1424
MlyI GAGTC 2 cut(s) 550, 1528
MmeI TCCRAC 2 cut(s) 839, 1492
MroXI GAANNNNTTC 1 cut(s) 1614
MseI TTAA 5 cut(s) 308, 687, 1004, 1415, 1524
MslI CAYNNNNRTG 1 cut(s) 1289
MspCI CTTAAG 1 cut(s) 1523
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 1208
Mva1269I GAATGC 1 cut(s) 1178
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 5 cut(s) 257, 962, 1358, 1448, 1457
NdeII GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
NlaIII CATG 2 cut(s) 446, 1069
NlaIV GGNNCC 2 cut(s) 1253, 1599
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 1068, 1317
NspI RCATGY 1 cut(s) 1069
NspV TTCGAA 2 cut(s) 1265, 1574
PciI ACATGT 1 cut(s) 1065
PctI GAATGC 1 cut(s) 1178
PdmI GAANNNNTTC 1 cut(s) 1614
PfeI GAWTC 7 cut(s) 8, 65, 119, 705, 811, 1097, 1550
PflFI GACNNNGTC 2 cut(s) 1166, 1518
PkrI GCNGC 3 cut(s) 250, 1251, 1360
PleI GAGTC 2 cut(s) 550, 1527
PpsI GAGTC 2 cut(s) 550, 1527
PpuMI RGGWCCY 1 cut(s) 1598
PscI ACATGT 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 1598
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 1253, 1599
PspPI GGNCC 1 cut(s) 1598
PspPPI RGGWCCY 1 cut(s) 1598
PstI CTGCAG 1 cut(s) 909
PstNI CAGNNNCTG 1 cut(s) 1112
PsuI RGATCY 3 cut(s) 339, 722, 971
PsyI GACNNNGTC 2 cut(s) 1166, 1518
RsaI GTAC 5 cut(s) 61, 164, 352, 439, 1582
RsaNI GTAC 5 cut(s) 60, 163, 351, 438, 1581
RseI CAYNNNNRTG 1 cut(s) 1289
SaqAI TTAA 5 cut(s) 308, 687, 1004, 1415, 1524
SatI GCNGC 3 cut(s) 249, 1250, 1359
Sau3AI GATC 7 cut(s) 301, 319, 334, 339, 709, 722, 971
Sau96I GGNCC 1 cut(s) 1598
ScaI AGTACT 3 cut(s) 164, 439, 1582
SchI GAGTC 2 cut(s) 550, 1528
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 4 cut(s) 394, 414, 1016, 1462
SfaNI GCATC 2 cut(s) 22, 1438
SfcI CTRYAG 2 cut(s) 905, 1104
SfuI TTCGAA 2 cut(s) 1265, 1574
SinI GGWCC 1 cut(s) 1598
SmiMI CAYNNNNRTG 1 cut(s) 1289
SmlI CTYRAG 4 cut(s) 393, 455, 624, 1523
SmoI CTYRAG 4 cut(s) 393, 455, 624, 1523
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 6 cut(s) 363, 783, 844, 1208, 1261, 1424
SsiI CCGC 4 cut(s) 56, 537, 872, 1249
SspMI CTAG 7 cut(s) 387, 822, 855, 888, 1008, 1125, 1586
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 1353
TaaI ACNGT 4 cut(s) 662, 760, 1114, 1199
TaqI TCGA 5 cut(s) 253, 503, 708, 1265, 1574
TasI AATT 6 cut(s) 363, 783, 844, 1208, 1261, 1424
TatI WGTACW 3 cut(s) 162, 437, 1580
TauI GCSGC 1 cut(s) 1252
TfiI GAWTC 7 cut(s) 8, 65, 119, 705, 811, 1097, 1550
Tru1I TTAA 5 cut(s) 308, 687, 1004, 1415, 1524
Tru9I TTAA 5 cut(s) 308, 687, 1004, 1415, 1524
TscAI CASTG 6 cut(s) 619, 667, 747, 765, 928, 1204
TseFI GTSAC 2 cut(s) 1068, 1317
TseI GCWGC 2 cut(s) 248, 1358
Tsp45I GTSAC 2 cut(s) 1068, 1317
TspDTI ATGAA 5 cut(s) 57, 87, 111, 987, 1239
TspGWI ACGGA 2 cut(s) 368, 1420
TspRI CASTG 6 cut(s) 619, 667, 747, 765, 928, 1204
Tth111I GACNNNGTC 2 cut(s) 1166, 1518
Vha464I CTTAAG 1 cut(s) 1523
VpaK11BI GGWCC 1 cut(s) 1598
XapI RAATTY 2 cut(s) 844, 1261
XbaI TCTAGA 1 cut(s) 1585
XceI RCATGY 1 cut(s) 1069
XmnI GAANNNNTTC 1 cut(s) 1614
XspI CTAG 7 cut(s) 387, 822, 855, 888, 1008, 1125, 1586
ZrmI AGTACT 3 cut(s) 164, 439, 1582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.