Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006845.1

Orthogroup ID

OG0003792

Physical Location & Seq

Genomic Coordinates Forward (+)

49657 .. 52594

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006845.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

atgggtgaatcaatagtgggttttccaaaagatgctgataagatgggagagatagctggtacagattcatcaaatccttctctggaagtgtcggtttcatttggtaggtttgagaatgattcattatcttgggagaaatggtcggcattttcgccaaataagtacttggaagaagttgagaagtgtgctactcctggttcggtagctcagaaaagggcttattttgaagctcattacaagaggatagctgctcgaaaagccgaggagcttctggaacaagagaagcaaatgcaagatgaggatgatcccttaaagtcagatgatcaaaataatggagatcagatctgttgtggtacggattgtggaattgatgtagctaccagtcaaactagtgctcaagcaaatagtcaagagcccaatatagagaatgggatgagcagcactcatgtggaagatctcaaggaggaggatgaggatgttttcacaatggaatgtcaaacatcatcgattgagggtagagaaatagaggaaactgatagcggagtggttagtccgaagactccaaagctgaacagaccagaagaacttgttttggtaaaagaagtggaaaccatcactgctgacactcaagaaacaatacaggaagttccaaagactttggacagtgatacaggcaatgctccagaagttaaagaggaaaaagcgagattcgatcctcagaagagatctcagaaggttactccagtgaacaaggagaggacagtggcaaaggccaagaagaaatcaatttcaccaatgactaaaacacctcagaatccgacccctagactgtcaaagttaccacagaattccacccctagagtgtcaaagttaccacagaattccacccctagagtgtcaaagataccgcagaatactacccctagagtgtcaaagatactgcagaataccacccctagtgtgtcaaagccaatatcagctcctaacggagcaaaatctgcaccaagatcctcagtaacgaaggccaatggttcatctttaactaggagcacaaatcagtcaagtgaaaaaaccaagaaagtgcctcctaaatctctgcacatgtcactcagtttcaatcctaaaaagtctgattcagcttcagaaactgtggttacagctagaaaatctttgattatggagcaaatgggtgacaaggacattgtcaaacgagcattcaagacatttcaaaacagtgtcaaccaattgaaatcctctaatgaagagaaaccttcagcaccaatgcagctccctacaaagtcgaaagaaccaaaggtttccactcctatgcctctgccgaaagacactggagggtcactcaaaacgagttatccggataaaagaaatgccaaggctgccccatcatcttttggcctgagaagtgaagaaagagcagagaaacggaaggagttaacaaacaacttggcgaaacccaatgccagagatgcagagagagcacacttccagccaaagtcaaaggagcaaaaggaggcagagataaaaaagctaagacagagtcttaagttcaaggctacaccaacgcctgattcttatcggggacaaaagttatcgaaaagtactctagaaaaggagggtcctaagaaagaaacgcttcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

552

Amino Acids

60.98

Weight (kDa)

9.16

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24160 AT1G24160 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100
fragaria_vesca	FvH4_4g35241 FvH4_4g35241 FvH4_4g35241
malus_domestica	MD13G1085000.v1.1 MD16G1084200.v1.1
prunus_persica	Prupe.1G261800_v2.0.a1
pyrus_communis	pycom13g07350 pycom16g07320
rosa_chinensis	RchiOBHm_Chr4g0444851
rosa_laevigata	RLG00000005795
rosa_multiflora	Rmu_sc0006845.1_g000008 Rmu_sc0034891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007070 Rroxscaffold_5G00385340
rosa_rugosa	Rorug04G0355500 Rorug04G0355500 Rorug04G0355500 Rorug04G0355600 Rorug04G0355600
rosa_samantha	Rh1BG148900 Rh4AG417100 Rh4BG428900 Rh4CG443500 Rh4DG424700 Rh5BG510000
rosa_wichuraiana	Rw4G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1372
AciI	CCGC	2 cut(s)	540, 908
AclWI	GGATC	3 cut(s)	299, 707, 1002
AcsI	RAATTY	2 cut(s)	847, 880
AcuI	CTGAAG	2 cut(s)	1125, 1257
AfaI	GTAC	4 cut(s)	61, 164, 355, 1618
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	1 cut(s)	1101
AgsI	TTSAA	6 cut(s)	227, 1117, 1219, 1229, 1249, 1567
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	1570, 1602
AleI	CACNNNNGTG	1 cut(s)	446
Alw21I	GWGCWC	3 cut(s)	397, 1052, 1498
AlwI	GGATC	3 cut(s)	299, 707, 1002
AlwNI	CAGNNNCTG	1 cut(s)	1148
Aor13HI	TCCGGA	1 cut(s)	1372
AoxI	GGCC	3 cut(s)	771, 1023, 1411
ApeKI	GCWGC	4 cut(s)	248, 438, 1285, 1394
ApoI	RAATTY	2 cut(s)	847, 880
Asp700I	GAANNNNTTC	1 cut(s)	1650
AspS9I	GGNCC	1 cut(s)	1634
AsuHPI	GGTGA	3 cut(s)	17, 783, 1202
AvaII	GGWCC	1 cut(s)	1634
BanII	GRGCYC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	3 cut(s)	397, 1052, 1498
BbvI	GCAGC	4 cut(s)	235, 450, 1297, 1381
BccI	CCATC	3 cut(s)	37, 620, 1408
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	322
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	9 cut(s)	390, 825, 858, 891, 924, 957, 1044, 1161, 1622
BfmI	CTRYAG	1 cut(s)	941
BfrI	CTTAAG	1 cut(s)	1559
BglII	AGATCT	3 cut(s)	342, 454, 725
BisI	GCNGC	4 cut(s)	249, 439, 1286, 1395
BlsI	GCNGC	4 cut(s)	250, 440, 1287, 1396
BmcAI	AGTACT	2 cut(s)	164, 1618
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	1634
BmgT120I	GGNCC	1 cut(s)	1634
BmiI	GGNNCC	1 cut(s)	1635
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	22, 1474
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	4 cut(s)	427, 459, 1341, 1373
BpmI	CTGGAG	3 cut(s)	666, 726, 1368
BpuEI	CTTGAG	3 cut(s)	381, 443, 612
Bsa29I	ATCGAT	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	1590
BsaJI	CCNNGG	2 cut(s)	261, 1389
BsaWI	WCCGGW	1 cut(s)	1372
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse1I	ACTGG	3 cut(s)	381, 743, 1351
Bse3DI	GCAATG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	1590
BseAI	TCCGGA	1 cut(s)	1372
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	506
BseDI	CCNNGG	2 cut(s)	261, 1389
BseGI	GGATG	4 cut(s)	307, 438, 475, 481
BseJI	GATNNNNATC	1 cut(s)	1590
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	7 cut(s)	221, 731, 743, 824, 1026, 1123, 1406
BseNI	ACTGG	3 cut(s)	381, 743, 1351
BseRI	GAGGAG	2 cut(s)	278, 479
BseXI	GCAGC	4 cut(s)	235, 450, 1297, 1381
BsgI	GTGCAG	2 cut(s)	984, 1082
BshFI	GGCC	3 cut(s)	773, 1025, 1413
BshVI	ATCGAT	1 cut(s)	506
BsiHKAI	GWGCWC	3 cut(s)	397, 1052, 1498
BsiSI	CCGG	1 cut(s)	1373
BslFI	GGGAC	1 cut(s)	1611
BsmFI	GGGAC	1 cut(s)	1611
BsmI	GAATGC	1 cut(s)	1214
BsnI	GGCC	3 cut(s)	773, 1025, 1413
Bsp1286I	GDGCHC	4 cut(s)	397, 417, 1052, 1498
Bsp13I	TCCGGA	1 cut(s)	1372
Bsp143I	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
BspACI	CCGC	2 cut(s)	540, 908
BspANI	GGCC	3 cut(s)	773, 1025, 1413
BspCNI	CTCAG	7 cut(s)	220, 730, 742, 823, 1025, 1122, 1407
BspDI	ATCGAT	1 cut(s)	506
BspEI	TCCGGA	1 cut(s)	1372
BspLI	GGNNCC	1 cut(s)	1635
BspMAI	CTGCAG	1 cut(s)	945
BspPI	GGATC	3 cut(s)	299, 707, 1002
BspTI	CTTAAG	1 cut(s)	1559
BsrDI	GCAATG	1 cut(s)	682
BsrI	ACTGG	3 cut(s)	381, 743, 1351
BssECI	CCNNGG	2 cut(s)	261, 1389
BssMI	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
BssT1I	CCWWGG	1 cut(s)	1389
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	5 cut(s)	665, 763, 831, 1150, 1235
Bst6I	CTCTTC	2 cut(s)	716, 1257
BstAFI	CTTAAG	1 cut(s)	1559
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstDEI	CTNAG	9 cut(s)	207, 717, 729, 810, 1012, 1109, 1415, 1547, 1638
BstF5I	GGATG	4 cut(s)	307, 438, 475, 481
BstKTI	GATC	8 cut(s)	307, 325, 340, 345, 457, 715, 728, 1010
BstMBI	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 998, 1394, 1484, 1493
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	1105
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	941
BstV1I	GCAGC	4 cut(s)	235, 450, 1297, 1381
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	4 cut(s)	342, 454, 725, 1007
BstYI	RGATCY	4 cut(s)	342, 454, 725, 1007
Bsu15I	ATCGAT	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	773, 1025, 1413
BsuTUI	ATCGAT	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	307, 438, 475, 481
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	6 cut(s)	615, 670, 750, 768, 1240, 1344
CaiI	CAGNNNCTG	1 cut(s)	1148
Cfr13I	GGNCC	1 cut(s)	1634
ClaI	ATCGAT	1 cut(s)	506
Csp6I	GTAC	4 cut(s)	60, 163, 354, 1617
CviAII	CATG	2 cut(s)	446, 1102
CviQI	GTAC	4 cut(s)	60, 163, 354, 1617
DdeI	CTNAG	9 cut(s)	207, 717, 729, 810, 1012, 1109, 1415, 1547, 1638
DpnI	GATC	8 cut(s)	306, 324, 339, 344, 456, 714, 727, 1009
DpnII	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
Eam1104I	CTCTTC	2 cut(s)	716, 1257
EarI	CTCTTC	2 cut(s)	716, 1257
Eco130I	CCWWGG	1 cut(s)	1389
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	1634
Eco57I	CTGAAG	2 cut(s)	1125, 1257
EcoO109I	RGGNCCY	1 cut(s)	1634
EcoRI	GAATTC	2 cut(s)	847, 880
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	1389
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	1389
FaeI	CATG	2 cut(s)	449, 1105
FaiI	YATR	5 cut(s)	422, 447, 1103, 1178, 1328
FalI	AAGNNNNNCTT	1 cut(s)	1635
FaqI	GGGAC	1 cut(s)	1611
FatI	CATG	2 cut(s)	445, 1101
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	249, 439, 1286, 1395
FokI	GGATG	4 cut(s)	314, 445, 482, 488
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	249, 439, 1286, 1395
FspBI	CTAG	9 cut(s)	390, 825, 858, 891, 924, 957, 1044, 1161, 1622
GluI	GCNGC	4 cut(s)	249, 439, 1286, 1395
GsuI	CTGGAG	3 cut(s)	666, 726, 1368
HaeIII	GGCC	3 cut(s)	773, 1025, 1413
HapII	CCGG	1 cut(s)	1373
Hin1II	CATG	2 cut(s)	449, 1105
HincII	GTYRAC	2 cut(s)	1240, 1452
HindII	GTYRAC	2 cut(s)	1240, 1452
HinfI	GANTC	9 cut(s)	8, 65, 119, 559, 708, 814, 1133, 1555, 1586
HpaI	GTTAAC	1 cut(s)	1452
HpaII	CCGG	1 cut(s)	1373
HphI	GGTGA	3 cut(s)	17, 783, 1202
Hpy166II	GTNNAC	3 cut(s)	748, 1240, 1452
Hpy188III	TCNNGA	8 cut(s)	83, 272, 410, 629, 683, 1219, 1373, 1622
Hpy8I	GTNNAC	3 cut(s)	748, 1240, 1452
HpyAV	CCTTC	5 cut(s)	87, 727, 1015, 1281, 1438
HpyCH4III	ACNGT	5 cut(s)	665, 763, 831, 1150, 1235
HpyCH4V	TGCA	6 cut(s)	292, 943, 1001, 1099, 1285, 1487
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 998, 1394, 1484, 1493
HpyF3I	CTNAG	9 cut(s)	207, 717, 729, 810, 1012, 1109, 1415, 1547, 1638
Hsp92II	CATG	2 cut(s)	449, 1105
Kpn2I	TCCGGA	1 cut(s)	1372
Ksp22I	TGATCA	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	1452
Kzo9I	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
LmnI	GCTCC	8 cut(s)	265, 685, 985, 989, 1047, 1180, 1293, 1519
Lsp1109I	GCAGC	4 cut(s)	235, 450, 1297, 1381
LweI	GCATC	2 cut(s)	22, 1474
MaeI	CTAG	9 cut(s)	390, 825, 858, 891, 924, 957, 1044, 1161, 1622
MaeIII	GTNAC	8 cut(s)	736, 837, 870, 1015, 1104, 1153, 1190, 1353
MalI	GATC	8 cut(s)	306, 324, 339, 344, 456, 714, 727, 1009
MboI	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
MboII	GAAGA	8 cut(s)	182, 464, 568, 593, 733, 790, 1274, 1436
MfeI	CAATTG	1 cut(s)	1244
MflI	RGATCY	4 cut(s)	342, 454, 725, 1007
MhlI	GDGCHC	4 cut(s)	397, 417, 1052, 1498
MluCI	AATT	5 cut(s)	366, 786, 847, 880, 1244
MlyI	GAGTC	2 cut(s)	553, 1564
MmeI	TCCRAC	1 cut(s)	842
MroI	TCCGGA	1 cut(s)	1372
MroXI	GAANNNNTTC	1 cut(s)	1650
MseI	TTAA	5 cut(s)	311, 690, 1040, 1451, 1560
MslI	CAYNNNNRTG	2 cut(s)	446, 1325
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	1 cut(s)	1373
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	1244
Mva1269I	GAATGC	1 cut(s)	1214
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	257, 998, 1394, 1484, 1493
NdeII	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
NlaIII	CATG	2 cut(s)	449, 1105
NlaIV	GGNNCC	1 cut(s)	1635
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	3 cut(s)	1104, 1190, 1353
NspI	RCATGY	1 cut(s)	1105
OliI	CACNNNNGTG	1 cut(s)	446
PciI	ACATGT	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	1214
PdmI	GAANNNNTTC	1 cut(s)	1650
PfeI	GAWTC	7 cut(s)	8, 65, 119, 708, 814, 1133, 1586
PflFI	GACNNNGTC	2 cut(s)	1202, 1554
PkrI	GCNGC	4 cut(s)	250, 440, 1287, 1396
PleI	GAGTC	2 cut(s)	553, 1563
PpsI	GAGTC	2 cut(s)	553, 1563
PpuMI	RGGWCCY	1 cut(s)	1634
PscI	ACATGT	1 cut(s)	1101
Psp5II	RGGWCCY	1 cut(s)	1634
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	1635
PspPI	GGNCC	1 cut(s)	1634
PspPPI	RGGWCCY	1 cut(s)	1634
PstI	CTGCAG	1 cut(s)	945
PstNI	CAGNNNCTG	1 cut(s)	1148
PsuI	RGATCY	4 cut(s)	342, 454, 725, 1007
PsyI	GACNNNGTC	2 cut(s)	1202, 1554
RsaI	GTAC	4 cut(s)	61, 164, 355, 1618
RsaNI	GTAC	4 cut(s)	60, 163, 354, 1617
RseI	CAYNNNNRTG	2 cut(s)	446, 1325
SaqAI	TTAA	5 cut(s)	311, 690, 1040, 1451, 1560
SatI	GCNGC	4 cut(s)	249, 439, 1286, 1395
Sau3AI	GATC	8 cut(s)	304, 322, 337, 342, 454, 712, 725, 1007
Sau96I	GGNCC	1 cut(s)	1634
ScaI	AGTACT	2 cut(s)	164, 1618
SchI	GAGTC	2 cut(s)	553, 1564
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	4 cut(s)	397, 417, 1052, 1498
SfaNI	GCATC	2 cut(s)	22, 1474
SfcI	CTRYAG	1 cut(s)	941
SinI	GGWCC	1 cut(s)	1634
SmiMI	CAYNNNNRTG	2 cut(s)	446, 1325
SmlI	CTYRAG	4 cut(s)	396, 458, 627, 1559
SmoI	CTYRAG	4 cut(s)	396, 458, 627, 1559
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	5 cut(s)	366, 786, 847, 880, 1244
SsiI	CCGC	2 cut(s)	540, 908
SspMI	CTAG	9 cut(s)	390, 825, 858, 891, 924, 957, 1044, 1161, 1622
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	1389
TaaI	ACNGT	5 cut(s)	665, 763, 831, 1150, 1235
TaqI	TCGA	5 cut(s)	253, 506, 711, 1301, 1610
TasI	AATT	5 cut(s)	366, 786, 847, 880, 1244
TatI	WGTACW	2 cut(s)	162, 1616
TfiI	GAWTC	7 cut(s)	8, 65, 119, 708, 814, 1133, 1586
Tru1I	TTAA	5 cut(s)	311, 690, 1040, 1451, 1560
Tru9I	TTAA	5 cut(s)	311, 690, 1040, 1451, 1560
TscAI	CASTG	6 cut(s)	622, 670, 750, 768, 1240, 1351
TseFI	GTSAC	3 cut(s)	1104, 1190, 1353
TseI	GCWGC	4 cut(s)	248, 438, 1285, 1394
Tsp45I	GTSAC	3 cut(s)	1104, 1190, 1353
TspDTI	ATGAA	5 cut(s)	57, 87, 111, 1023, 1275
TspGWI	ACGGA	3 cut(s)	371, 1002, 1456
TspRI	CASTG	6 cut(s)	622, 670, 750, 768, 1240, 1351
Tth111I	GACNNNGTC	2 cut(s)	1202, 1554
Vha464I	CTTAAG	1 cut(s)	1559
VpaK11BI	GGWCC	1 cut(s)	1634
XapI	RAATTY	2 cut(s)	847, 880
XbaI	TCTAGA	1 cut(s)	1621
XceI	RCATGY	1 cut(s)	1105
XmnI	GAANNNNTTC	1 cut(s)	1650
XspI	CTAG	9 cut(s)	390, 825, 858, 891, 924, 957, 1044, 1161, 1622
ZrmI	AGTACT	2 cut(s)	164, 1618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.