Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003792

Physical Location & Seq

Genomic Coordinates Forward (+)

4777543 .. 4778982

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTGAATCAATAGTCGATTTTGCCAAGGATGCTGAAAAGGTGGTGGAGGGGGAGACAGTAGCTTCAAATTCTTCAAACCCTCAACTGGAAGTGTCGGTTTCTTTCGGAAGATTTGAGAATGATTCTTCACTGTCCTGGGAGAAATGGTCGACATTTTCGCAGAATAAGTACTTGGAGGAAGTTGGGAAGTGTGCCACTCCTGGCTCAGTGGCCCAGAAAAGGGCTTACTTTGAAGCCCATTACAAGAGGGTTGCTGCTCGAAAGGCCGAGGAGATGATGGAGCAAGAGAAGCAAATGCAAGGTGGTGATACCTTTAGGTCGGAATCTGATCAGAAGAGCGGAGATCAGACGGATTCCGAGGCTCATTTCGAAATTGATTTGGCTAACAGTCAAAGTAATGCCCAAGGAAATGATCAAGAAGCAAATTTCGACAGCGAGATTAGTGAAACTCATGTGCATGATCTCAAGGAGGACGATGTTTTTGCCATAGTGTGTCAAAACTCATTGGCTGTGGGAGAAAAAGAAGAAACAGATGGCAGAATGGATAATCCCGAGTTGGACAATCCGGAGGAGGAACTTGTTTTAGTAAAAGAAGTAGAACATGTCCCTGCTGAATCTCAAGGAGTACAGGAGATTCCAAAGACTTTGGACAATGATGTAGGAAGTGCTCCAGAAGTCAAAGAGGTGAAAGAAGAAAAACCCAGATTGGATCTTCGGAAGGTACCTCTGAAGGTTACTCCAATGAGCAAGGAGAGAAATGTGGCAAGTGTTAAGAAGAAGGCAGTTCCACCAATAGCAAAAACACCAGAGAAATCCGCCCCTAGGGTGTCAAAGTCTATATCAACTCCCACCCCTAAAGCATCGAAGTCTACGACAACTCCGACCCCTAGAGCATCGAAGCTGTTATCAACTTCCACCCCTAAAGCATCGAATCTATATCAACTTCCACACCTAGAGTGGCTAAGTCTATATCAACTTCCACCCCTAGAGTGGCTAAGTTTCTATCAACTTCTACTGCAACACCTTCATCGTGGTCCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

349

Amino Acids

38.81

Weight (kDa)

5.1

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24160 AT1G24160 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100
fragaria_vesca	FvH4_4g35241 FvH4_4g35241 FvH4_4g35241
malus_domestica	MD13G1085000.v1.1 MD16G1084200.v1.1
prunus_persica	Prupe.1G261800_v2.0.a1
pyrus_communis	pycom13g07350 pycom16g07320
rosa_chinensis	RchiOBHm_Chr4g0444851
rosa_laevigata	RLG00000005795
rosa_multiflora	Rmu_sc0006845.1_g000008 Rmu_sc0034891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007070 Rroxscaffold_5G00385340
rosa_rugosa	Rorug04G0355500 Rorug04G0355500 Rorug04G0355500 Rorug04G0355600 Rorug04G0355600
rosa_samantha	Rh1BG148900 Rh4AG417100 Rh4BG428900 Rh4CG443500 Rh4DG424700 Rh5BG510000
rosa_wichuraiana	Rw4G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	724
AccB1I	GGYRCC	1 cut(s)	724
AccBSI	CCGCTC	1 cut(s)	342
AccI	GTMKAC	2 cut(s)	152, 872
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	342, 819
AclWI	GGATC	1 cut(s)	720
AcsI	RAATTY	2 cut(s)	70, 427
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	3 cut(s)	173, 630, 726
AfiI	CCNNNNNNNGG	5 cut(s)	88, 222, 223, 825, 993
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	3 cut(s)	69, 78, 236
AjnI	CCWGG	2 cut(s)	137, 202
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	2 cut(s)	65, 904
AluI	AGCT	2 cut(s)	65, 904
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	720
Ama87I	CYCGRG	1 cut(s)	554
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	2 cut(s)	213, 267
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	70, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
Asp718I	GGTACC	1 cut(s)	724
AspA2I	CCTAGG	1 cut(s)	824
AspS9I	GGNCC	2 cut(s)	214, 1037
AsuHPI	GGTGA	3 cut(s)	17, 320, 700
AsuII	TTCGAA	1 cut(s)	372
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	1037
AvrII	CCTAGG	1 cut(s)	824
BanI	GGYRCC	1 cut(s)	724
Bbv12I	GWGCWC	1 cut(s)	673
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	274, 530
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	2 cut(s)	139, 204
BclI	TGATCA	2 cut(s)	331, 415
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	4 cut(s)	825, 891, 956, 989
BisI	GCNGC	1 cut(s)	258
BlnI	CCTAGG	1 cut(s)	824
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	139, 204
Bme18I	GGWCC	1 cut(s)	1037
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	214, 1037
BmiI	GGNNCC	1 cut(s)	726
BmrFI	CCNGG	2 cut(s)	139, 204
BmsI	GCATC	4 cut(s)	22, 872, 905, 938
BpmI	CTGGAG	1 cut(s)	657
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	452, 606
BsaJI	CCNNGG	7 cut(s)	27, 138, 270, 360, 406, 824, 1040
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 865, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 222, 223, 825, 993
Bse1I	ACTGG	1 cut(s)	93
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	139, 204
BseDI	CCNNGG	7 cut(s)	27, 138, 270, 360, 406, 824, 1040
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	5 cut(s)	88, 222, 223, 825, 993
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	287, 587
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	215, 269
BshNI	GGYRCC	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	673
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	5 cut(s)	88, 222, 223, 825, 993
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	215, 269
BsoBI	CYCGRG	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	5 cut(s)	331, 346, 415, 463, 712
BspACI	CCGC	2 cut(s)	342, 819
BspANI	GGCC	2 cut(s)	215, 269
BspCNI	CTCAG	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	726
BspPI	GGATC	1 cut(s)	720
BspQI	GCTCTTC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	724
BsrBI	CCGCTC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	7 cut(s)	27, 138, 270, 360, 406, 824, 1040
BssMI	GATC	5 cut(s)	331, 346, 415, 463, 712
BssT1I	CCWWGG	3 cut(s)	27, 406, 824
Bst2UI	CCWGG	2 cut(s)	139, 204
Bst4CI	ACNGT	3 cut(s)	61, 135, 392
Bst6I	CTCTTC	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	208, 965, 998
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	5 cut(s)	334, 349, 418, 466, 715
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	5 cut(s)	331, 346, 415, 463, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 266, 292
BstNI	CCWGG	2 cut(s)	139, 204
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	137, 202
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuRI	GGCC	2 cut(s)	215, 269
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	131, 216
Cfr13I	GGNCC	2 cut(s)	214, 1037
Csp6I	GTAC	3 cut(s)	172, 629, 725
CviAII	CATG	3 cut(s)	455, 461, 605
CviQI	GTAC	3 cut(s)	172, 629, 725
DdeI	CTNAG	3 cut(s)	208, 965, 998
DpnI	GATC	5 cut(s)	333, 348, 417, 465, 714
DpnII	GATC	5 cut(s)	331, 346, 415, 463, 712
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	808
Eco130I	CCWWGG	3 cut(s)	27, 406, 824
Eco47I	GGWCC	1 cut(s)	1037
Eco57I	CTGAAG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	137, 202
EcoT14I	CCWWGG	3 cut(s)	27, 406, 824
ErhI	CCWWGG	3 cut(s)	27, 406, 824
FaeI	CATG	3 cut(s)	458, 464, 608
FaiI	YATR	7 cut(s)	456, 462, 491, 606, 842, 940, 973
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	3 cut(s)	454, 460, 604
FbaI	TGATCA	2 cut(s)	331, 415
FblI	GTMKAC	2 cut(s)	152, 872
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	4 cut(s)	825, 891, 956, 989
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	2 cut(s)	215, 269
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	3 cut(s)	458, 464, 608
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	7 cut(s)	8, 125, 326, 356, 617, 637, 934
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	3 cut(s)	17, 320, 700
Hpy166II	GTNNAC	2 cut(s)	153, 873
Hpy188I	TCNGA	9 cut(s)	110, 325, 331, 336, 351, 361, 720, 732, 885
Hpy188III	TCNNGA	4 cut(s)	419, 554, 569, 674
Hpy8I	GTNNAC	2 cut(s)	153, 873
HpyAV	CCTTC	4 cut(s)	715, 727, 775, 1037
HpyCH4III	ACNGT	3 cut(s)	61, 135, 392
HpyCH4V	TGCA	3 cut(s)	301, 460, 1021
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 266, 292
HpyF3I	CTNAG	3 cut(s)	208, 965, 998
Hsp92II	CATG	3 cut(s)	458, 464, 608
Kpn2I	TCCGGA	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	728
Ksp22I	TGATCA	2 cut(s)	331, 415
Kzo9I	GATC	5 cut(s)	331, 346, 415, 463, 712
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	2 cut(s)	283, 676
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	4 cut(s)	22, 872, 905, 938
MaeI	CTAG	4 cut(s)	825, 891, 956, 989
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	5 cut(s)	333, 348, 417, 465, 714
MbiI	CCGCTC	1 cut(s)	342
MboI	GATC	5 cut(s)	331, 346, 415, 463, 712
MboII	GAAGA	8 cut(s)	66, 120, 123, 349, 539, 707, 707, 790
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	3 cut(s)	70, 375, 427
MmeI	TCCRAC	3 cut(s)	303, 540, 908
MroI	TCCGGA	1 cut(s)	568
MseI	TTAA	1 cut(s)	774
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	139, 204
MvaI	CCWGG	2 cut(s)	139, 204
MwoI	GCNNNNNNNGC	3 cut(s)	32, 266, 292
NdeII	GATC	5 cut(s)	331, 346, 415, 463, 712
NlaIII	CATG	3 cut(s)	458, 464, 608
NlaIV	GGNNCC	1 cut(s)	726
NmeAIII	GCCGAG	1 cut(s)	295
NspI	RCATGY	1 cut(s)	608
NspV	TTCGAA	1 cut(s)	372
PciI	ACATGT	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	872, 881
PfeI	GAWTC	7 cut(s)	8, 125, 326, 356, 617, 637, 934
PkrI	GCNGC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	137, 202
PspGI	CCWGG	2 cut(s)	137, 202
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	2 cut(s)	214, 1037
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	3 cut(s)	173, 630, 726
RsaNI	GTAC	3 cut(s)	172, 629, 725
RseI	CAYNNNNRTG	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	5 cut(s)	331, 346, 415, 463, 712
Sau96I	GGNCC	2 cut(s)	214, 1037
ScaI	AGTACT	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	139, 204
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	4 cut(s)	22, 872, 905, 938
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	1 cut(s)	1037
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	467, 621
SmoI	CTYRAG	2 cut(s)	467, 621
Sse9I	AATT	3 cut(s)	70, 375, 427
SsiI	CCGC	2 cut(s)	342, 819
SspMI	CTAG	4 cut(s)	825, 891, 956, 989
StyD4I	CCNGG	2 cut(s)	137, 202
StyI	CCWWGG	3 cut(s)	27, 406, 824
TaaI	ACNGT	3 cut(s)	61, 135, 392
TaqI	TCGA	8 cut(s)	18, 152, 262, 372, 432, 866, 899, 932
TasI	AATT	3 cut(s)	70, 375, 427
TatI	WGTACW	2 cut(s)	171, 628
TfiI	GAWTC	7 cut(s)	8, 125, 326, 356, 617, 637, 934
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	2 cut(s)	138, 216
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	1019
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	138, 216
VpaK11BI	GGWCC	1 cut(s)	1037
XapI	RAATTY	2 cut(s)	70, 427
XceI	RCATGY	1 cut(s)	608
XcmI	CCANNNNNNNNNTGG	2 cut(s)	957, 990
XmaJI	CCTAGG	1 cut(s)	824
XmiI	GTMKAC	2 cut(s)	152, 872
XspI	CTAG	4 cut(s)	825, 891, 956, 989
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.