Rroxscaffold_1G00007070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003792
Physical Location & Seq
Forward (+)
9053157 .. 9055515
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007070.1

Sequence Viewer

Length: 687 bp
ATGAGACGTGGGCTACTCAGGGAAGCTATAAACCTCTACACTTCACTCAGAACTCGGAACATTGCTCCTGACAATCTTCTGCTTCTCTTTGTTGCCAAGGCCTGTGCGGTTTTGGGTAATCTCAGAAAAGCAACAGAGCTTCACGATGAGGCAATTTGGTTTGGGTTTCATCTGGATATTGACCAGGCAGGGTTTATAGGAGAGAGAGCTGATACAAATCCATCAAATACTTCTTTGGAAGTGTCGGTTTCATTGGGTAGGTTTGAGAATTATTCATTATCTTGGGAGAAATGGTCGGCATTTTTACCAAATAAGTACTTGGAAGAAGTTGAGAAGTGTGCTACTCCTAGTTCAGTAGCTCAGAAAAGGGCTTATTTTAAAGCTCATTACAAAAGGATAGCTGCTCGAAAAGCCGACGAGCTTTTGGAACAAGAGAAGCAAATGCAAGATGATCAAAATAATAGAGATCAGATATGTACTGGTACAAATCATGGAATTGATTTAGCTACCAGTCAAACTAGTGTGCAAGGAAATAGTGAAGATGCGAAATCCGAATCCGGCGAAATCGTCGACATAGATATCTCACTTTGGGGTGTGCCTCTCGTTCAATTGATGGAGAAGAGTATCCAAAGGCTTGAATTGAGAGCTTTAACAGCTATACCGCCGGCGCCACCTCCGGATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

228

Amino Acids

25.52

Weight (kDa)

5.34

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 570
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 2 cut(s) 107, 662
AcyI GRCGYC 1 cut(s) 668
AfaI GTAC 3 cut(s) 317, 478, 484
AfiI CCNNNNNNNGG 1 cut(s) 680
AgsI TTSAA 2 cut(s) 608, 638
AhlI ACTAGT 1 cut(s) 518
AjiI CACGTC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 183
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 388
BccI CCATC 3 cut(s) 229, 607, 674
BciT130I CCWGG 1 cut(s) 185
BciVI GTATCC 1 cut(s) 635
BclI TGATCA 1 cut(s) 451
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 2 cut(s) 348, 519
BfoI RGCGCY 1 cut(s) 671
BfuI GTATCC 1 cut(s) 635
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 669
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 668
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse118I RCCGGY 1 cut(s) 664
Bse1I ACTGG 2 cut(s) 484, 510
Bse3DI GCAATG 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 685
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 4 cut(s) 31, 61, 136, 374
BseNI ACTGG 2 cut(s) 484, 510
BseXI GCAGC 1 cut(s) 388
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 667
BsiSI CCGG 3 cut(s) 558, 665, 677
BslI CCNNNNNNNGG 1 cut(s) 680
BsnI GGCC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 676
Bsp143I GATC 2 cut(s) 451, 466
BspACI CCGC 2 cut(s) 107, 662
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 4 cut(s) 30, 60, 135, 373
BspEI TCCGGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 664
BsrI ACTGG 2 cut(s) 484, 510
BssAI RCCGGY 1 cut(s) 664
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 451, 466
BssNI GRCGYC 1 cut(s) 668
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 614
BstACI GRCGYC 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 4 cut(s) 17, 47, 122, 360
BstF5I GGATG 1 cut(s) 685
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 2 cut(s) 454, 469
BstMBI GATC 2 cut(s) 451, 466
BstMWI GCNNNNNNNGC 2 cut(s) 410, 653
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 388
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 1 cut(s) 101
BtrI CACGTC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 666
CfoI GCGC 1 cut(s) 670
Cfr10I RCCGGY 1 cut(s) 664
Csp6I GTAC 3 cut(s) 316, 477, 483
CviAII CATG 1 cut(s) 491
CviQI GTAC 3 cut(s) 316, 477, 483
DdeI CTNAG 4 cut(s) 17, 47, 122, 360
DinI GGCGCC 1 cut(s) 669
DpnI GATC 2 cut(s) 453, 468
DpnII GATC 2 cut(s) 451, 466
DraI TTTAAA 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 101
Eco32I GATATC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 96
EgeI GGCGCC 1 cut(s) 669
EheI GGCGCC 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 1 cut(s) 494
FaiI YATR 6 cut(s) 29, 197, 475, 492, 575, 659
FatI CATG 1 cut(s) 490
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 2 cut(s) 348, 519
GlaI GCGC 1 cut(s) 669
GluI GCNGC 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 1 cut(s) 101
HapII CCGG 3 cut(s) 558, 665, 677
HhaI GCGC 1 cut(s) 670
Hin1I GRCGYC 1 cut(s) 668
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 1 cut(s) 554
HpaII CCGG 3 cut(s) 558, 665, 677
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 6 cut(s) 50, 57, 125, 363, 471, 553
Hpy188III TCNNGA 4 cut(s) 68, 143, 173, 677
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 2 cut(s) 419, 572
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 445, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 653
HpyF3I CTNAG 4 cut(s) 17, 47, 122, 360
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 668
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 1 cut(s) 668
KasI GGCGCC 1 cut(s) 667
Kpn2I TCCGGA 1 cut(s) 676
KroI GCCGGC 1 cut(s) 664
KroNI GCCGGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 2 cut(s) 451, 466
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 532
MaeI CTAG 2 cut(s) 348, 519
MaeII ACGT 1 cut(s) 7
MalI GATC 2 cut(s) 453, 468
MboI GATC 2 cut(s) 451, 466
MboII GAAGA 4 cut(s) 68, 335, 551, 631
MfeI CAATTG 1 cut(s) 608
MluCI AATT 5 cut(s) 153, 268, 495, 608, 638
Mly113I GGCGCC 1 cut(s) 668
MnlI CCTC 4 cut(s) 44, 142, 609, 684
MreI CGCCGGCG 1 cut(s) 664
MroI TCCGGA 1 cut(s) 676
MroNI GCCGGC 1 cut(s) 664
MseI TTAA 2 cut(s) 378, 650
MspI CCGG 3 cut(s) 558, 665, 677
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 410, 653
NaeI GCCGGC 1 cut(s) 666
NarI GGCGCC 1 cut(s) 668
NdeII GATC 2 cut(s) 451, 466
NgoMIV GCCGGC 1 cut(s) 664
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 1 cut(s) 669
PceI AGGCCT 1 cut(s) 101
PdiI GCCGGC 1 cut(s) 666
PfeI GAWTC 1 cut(s) 554
PkrI GCNGC 1 cut(s) 403
PluTI GGCGCC 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 669
RsaI GTAC 3 cut(s) 317, 478, 484
RsaNI GTAC 3 cut(s) 316, 477, 483
SalI GTCGAC 1 cut(s) 569
SaqAI TTAA 2 cut(s) 378, 650
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 2 cut(s) 451, 466
ScaI AGTACT 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 185
SfaNI GCATC 1 cut(s) 532
SfoI GGCGCC 1 cut(s) 669
SgrAI CRCCGGYG 1 cut(s) 664
SpeI ACTAGT 1 cut(s) 518
Sse9I AATT 5 cut(s) 153, 268, 495, 608, 638
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 2 cut(s) 107, 662
SspDI GGCGCC 1 cut(s) 667
SspMI CTAG 2 cut(s) 348, 519
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 406, 570
TasI AATT 5 cut(s) 153, 268, 495, 608, 638
TatI WGTACW 2 cut(s) 315, 476
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 378, 650
Tru9I TTAA 2 cut(s) 378, 650
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 3 cut(s) 158, 240, 264
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 2 cut(s) 348, 519
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.