Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003792

Physical Location & Seq

Genomic Coordinates Reverse (-)

81062224 .. 81063581

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG510000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAAGAGAGAGCTTATACAGATTCATCAAATCCTTCTTTGGAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATTCATTACCTTGGGAGAAATGGTCGGCATTTTTGCCAAATAAGTACTTGAAAGAAGTTGAGAAGTGTGCTACTCCTAGTTTAGTAGCTCAGAAAAGGGCTTATTTTAAAGCTCATTACAAAAGGATAGCTGCTCGAAAAGCCGACAAGCTTCTGGAACAAGAAAAGCAAATGCAAGATGATCAAAATAATGGAGATCAGATATGTCATTACGAATTATGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

100

Amino Acids

11.79

Weight (kDa)

6.11

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24160 AT1G24160 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100
fragaria_vesca	FvH4_4g35241 FvH4_4g35241 FvH4_4g35241
malus_domestica	MD13G1085000.v1.1 MD16G1084200.v1.1
prunus_persica	Prupe.1G261800_v2.0.a1
pyrus_communis	pycom13g07350 pycom16g07320
rosa_chinensis	RchiOBHm_Chr4g0444851
rosa_laevigata	RLG00000005795
rosa_multiflora	Rmu_sc0006845.1_g000008 Rmu_sc0034891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007070 Rroxscaffold_5G00385340
rosa_rugosa	Rorug04G0355500 Rorug04G0355500 Rorug04G0355500 Rorug04G0355600 Rorug04G0355600
rosa_samantha	Rh1BG148900 Rh4AG417100 Rh4BG428900 Rh4CG443500 Rh4DG424700 Rh5BG510000
rosa_wichuraiana	Rw4G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	5 cut(s)	14, 164, 188, 206, 226
AluI	AGCT	5 cut(s)	14, 164, 188, 206, 226
ApeKI	GCWGC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
BseDI	CCNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	256, 271
BspCNI	CTCAG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	256, 271
BssT1I	CCWWGG	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	259, 274
BstMBI	GATC	2 cut(s)	256, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	7 cut(s)	14, 164, 176, 188, 206, 218, 226
CviKI_1	RGCY	7 cut(s)	14, 164, 176, 188, 206, 218, 226
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	258, 273
DpnII	GATC	2 cut(s)	256, 271
DraI	TTTAAA	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaiI	YATR	3 cut(s)	18, 280, 295
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	2 cut(s)	23, 77
Hpy188I	TCNGA	2 cut(s)	168, 276
Hpy188III	TCNNGA	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	256, 271
LpnPI	CCDG	1 cut(s)	215
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	153
MalI	GATC	2 cut(s)	258, 273
MboI	GATC	2 cut(s)	256, 271
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	2 cut(s)	290, 298
MseI	TTAA	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	256, 271
PfeI	GAWTC	2 cut(s)	23, 77
PkrI	GCNGC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	256, 271
ScaI	AGTACT	1 cut(s)	122
SetI	ASST	7 cut(s)	16, 68, 88, 166, 190, 208, 228
SgeI	CNNG	8 cut(s)	99, 136, 165, 222, 235, 242, 248, 263
Sse9I	AATT	2 cut(s)	290, 298
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	290, 298
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	23, 77
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	15, 45, 69
XspI	CTAG	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.