Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003792

Physical Location & Seq

Genomic Coordinates Reverse (-)

27059749 .. 27063608

Gene Structure 3860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGGACATATTGGTGATATGCCCCCATGCTAGTCAAAGCCCCGTGCTGTACACAGTTTGTGTCCTGCTGTGTAGCTCTCTGGTAGCTCAACATTTGAACCCCTTCCTTGCAGAGCTAATGGGTGAATCAATAGTAGATTTCGCAAATGATGCTGATGAGGTGGGAGAGGCAGCTGCTTCAAATTCTTCAAATCCTGCTCTGGAAGTGTCGGTTTCGTTCGGTAAGTTTGAGAATGATTCACTGTCTTGGGAGAAGTGGTCAACATTCTCACCAAACAAGTACTTGGAAGAAGTTGAGAAGTGTGCTACGCCTGGTTCAGTGGCTCAGAAAAGGGCCTATTTTGAAGCCCATTACAAGAAGATAGCTGCTAGGAAAGCTGAGGAGCTTCTGGAGCAAGAGAAGCAAATGCAAGATGATCCCTTTAGGTCAGATGATCAGAAGGGTGGAGATCAGATCGATTGCGGGGCACATTTTGAAATTGATTTAACTAACAGTCAAAGTACTACCCAAGCAAATTATCAAGAAACCAATTTTGACAATGATACATTTAGTACTCATGTGGATGATCTCAAGGAGGATGATGTTATCACCATAGAATGTCAAAGCTCATTGACAGAGGGAGAGAAAGAAGAAACTGATAGTGTTACGGCTAGTCCCAACTTGAACAATCCGGAGGAACTTGTTTTGGAGAAAGAAGCAGAGAATGTCCCTGCTGTGTCTCAAGGGATACAGGAAATTCCAAAGAGTTTGGACAATGAAATGGGAAAGGCTCCAGAAGTTAAAGAGGAAAAACCAAGATTGCATCTTCAGAAGGGATCTCAGAAGGTTACTACTGGAGTGAGCAAGGAGAGAAATGTGGCAAATGTTAAGAAGAAACCAATTCCACAAATAACTAAAACACCACAGAAATCCACCCCTAGAATGTCAAAGCCTATATCAACTTCCACCCCTAGAGTGTCAAAGCCTATATCAACTTCCACCCCTAGAGTGTCAAAGCCTATATCAACTTCCACTCCTAGAGTGTCAAAGCCTATATCTACTTCCACCCCCAGAGCGTCAAAGTCTATATCAACTTCTACTGCAACACCTGCACCACGATCCTCAGTAAAAAAGGGCAACACTTCATCTTTACCCAGGAGCAAAAATCCTTCCATTGAGGACACCAAGAAAGTTCCTCCCAAGTCTTTGCACATGTCACCTAGTTTGGATCCTGCAAAGTCTGATTCAGCTTCACCGACAACCGCCAGAAAATCTTTCATTATGGAGAATATGGGAGATAAGGACATTGTCAGACGAGCATTTAAGACGTTTCAAAACAATTACAACCAACCGAAATCCTCCAGTGAAGAGAAATCTTCAACACCAACGCAGCTCTCTACAAAGGGGAAAGAATCAAGGGTTTCCACTTCAGTGCTCCTGCCAAAAGAGAATGGAGGGTCTCTAGGAAAAGGAACACCTAAGGCTGCTCCATCATCTTTTGGTTTGAGAAATGATGAAAGAGCAGATAAAAGAAAGGAGGCAAAATCCAATCCCAAAGAGGCAGAGAGATTGCACTTCCAACCAAAGTCAAAGGGTCAAAACGAAGCAGAGATAAAAAAGCTGAGACATAGTCTTAATTTTAAGACTACTCCCACGCCAGGCTCTTACCGCGGACAAAAAATGTCAAAAAGTACTTCAGAAAAGGAAAGTTCCAAGAATGAAACCCATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

571

Amino Acids

62.53

Weight (kDa)

8.78

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24160 AT1G24160 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100
fragaria_vesca	FvH4_4g35241 FvH4_4g35241 FvH4_4g35241
malus_domestica	MD13G1085000.v1.1 MD16G1084200.v1.1
prunus_persica	Prupe.1G261800_v2.0.a1
pyrus_communis	pycom13g07350 pycom16g07320
rosa_chinensis	RchiOBHm_Chr4g0444851
rosa_laevigata	RLG00000005795
rosa_multiflora	Rmu_sc0006845.1_g000008 Rmu_sc0034891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007070 Rroxscaffold_5G00385340
rosa_rugosa	Rorug04G0355500 Rorug04G0355500 Rorug04G0355500 Rorug04G0355600 Rorug04G0355600
rosa_samantha	Rh1BG148900 Rh4AG417100 Rh4BG428900 Rh4CG443500 Rh4DG424700 Rh5BG510000
rosa_wichuraiana	Rw4G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1096
Acc36I	ACCTGC	1 cut(s)	1096
AccII	CGCG	1 cut(s)	1650
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	4 cut(s)	462, 1242, 1648, 1650
AclWI	GGATC	5 cut(s)	410, 823, 1092, 1202, 1215
AcsI	RAATTY	2 cut(s)	181, 735
AcuI	CTGAAG	3 cut(s)	791, 1392, 1659
AfaI	GTAC	5 cut(s)	50, 281, 502, 553, 1672
AfiI	CCNNNNNNNGG	1 cut(s)	1637
AflIII	ACRYGT	1 cut(s)	1191
AgsI	TTSAA	8 cut(s)	97, 180, 189, 344, 476, 664, 1313, 1359
AjnI	CCWGG	3 cut(s)	310, 1133, 1636
AleI	CACNNNNGTG	1 cut(s)	1409
Alw21I	GWGCWC	1 cut(s)	1416
Alw26I	GTCTC	3 cut(s)	723, 1443, 1597
AlwI	GGATC	5 cut(s)	410, 823, 1092, 1202, 1215
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	5 cut(s)	170, 173, 365, 1369, 1463
ApoI	RAATTY	2 cut(s)	181, 735
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	6 cut(s)	25, 134, 261, 580, 1188, 1224
AxyI	CCTNAGG	1 cut(s)	1458
BaeGI	GKGCMC	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	1207
Bbv12I	GWGCWC	1 cut(s)	1416
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	160, 182, 352, 1381, 1450
BccI	CCATC	1 cut(s)	1477
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	3 cut(s)	312, 1135, 1638
BciVI	GTATCC	1 cut(s)	720
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	3 cut(s)	723, 1443, 1597
BfaI	CTAG	9 cut(s)	30, 369, 651, 918, 951, 984, 1017, 1200, 1442
BfuAI	ACCTGC	1 cut(s)	1096
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	5 cut(s)	171, 174, 366, 1370, 1464
BlsI	GCNGC	5 cut(s)	172, 175, 367, 1371, 1465
BmcAI	AGTACT	4 cut(s)	281, 502, 553, 1672
Bme1390I	CCNGG	3 cut(s)	312, 1135, 1638
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	771, 1209
BmrFI	CCNGG	3 cut(s)	312, 1135, 1638
BmsI	GCATC	2 cut(s)	139, 811
BpmI	CTGGAG	4 cut(s)	410, 756, 855, 1324
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	554, 705
Bsa29I	ATCGAT	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	1443
BsaJI	CCNNGG	2 cut(s)	1133, 1648
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 997, 1027
Bsc4I	CCNNNNNNNGG	1 cut(s)	1637
Bse1I	ACTGG	2 cut(s)	838, 1341
Bse21I	CCTNAGG	1 cut(s)	1458
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	3 cut(s)	312, 1135, 1638
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	1133, 1648
BseGI	GGATG	2 cut(s)	568, 583
BseLI	CCNNNNNNNGG	1 cut(s)	1637
BseMII	CTCAG	5 cut(s)	338, 369, 833, 1116, 1592
BseNI	ACTGG	2 cut(s)	838, 1341
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	160, 182, 352, 1381, 1450
BsgI	GTGCAG	1 cut(s)	1074
Bsh1236I	CGCG	1 cut(s)	1650
BshFI	GGCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	1416
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	2 cut(s)	639, 692
BslI	CCNNNNNNNGG	1 cut(s)	1637
BsmAI	GTCTC	3 cut(s)	723, 1443, 1597
BsmFI	GGGAC	2 cut(s)	639, 692
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	1443
Bsp1286I	GDGCHC	2 cut(s)	469, 1416
Bsp13I	TCCGGA	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
BspACI	CCGC	4 cut(s)	462, 1242, 1648, 1650
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	5 cut(s)	337, 370, 832, 1115, 1593
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	1 cut(s)	1650
BspLI	GGNNCC	2 cut(s)	771, 1209
BspMI	ACCTGC	1 cut(s)	1096
BspPI	GGATC	5 cut(s)	410, 823, 1092, 1202, 1215
BspTNI	GGTCTC	1 cut(s)	1443
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	838, 1341
BssECI	CCNNGG	2 cut(s)	1133, 1648
BssMI	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
Bst2UI	CCWGG	3 cut(s)	312, 1135, 1638
Bst4CI	ACNGT	3 cut(s)	55, 243, 494
Bst6I	CTCTTC	1 cut(s)	1341
BstAPI	GCANNNNNTGC	2 cut(s)	149, 1088
BstAUI	TGTACA	1 cut(s)	48
BstDEI	CTNAG	6 cut(s)	324, 378, 819, 1102, 1458, 1601
BstDSI	CCRYGG	1 cut(s)	1648
BstF5I	GGATG	2 cut(s)	568, 583
BstFNI	CGCG	1 cut(s)	1650
BstKTI	GATC	8 cut(s)	418, 436, 451, 456, 568, 818, 1100, 1210
BstMAI	GTCTC	3 cut(s)	723, 1443, 1597
BstMBI	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 374, 391, 400, 1088, 1647
BstNI	CCWGG	3 cut(s)	312, 1135, 1638
BstNSI	RCATGY	1 cut(s)	1195
BstSCI	CCNGG	3 cut(s)	310, 1133, 1636
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	1 cut(s)	1650
BstV1I	GCAGC	5 cut(s)	160, 182, 352, 1381, 1450
BstX2I	RGATCY	2 cut(s)	815, 1207
BstYI	RGATCY	2 cut(s)	815, 1207
Bsu15I	ATCGAT	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	1458
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	1648
BtsCI	GGATG	2 cut(s)	568, 583
BtsIMutI	CAGTG	4 cut(s)	239, 324, 1348, 1416
BveI	ACCTGC	1 cut(s)	1096
Cfr13I	GGNCC	1 cut(s)	333
Cfr42I	CCGCGG	1 cut(s)	1651
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	1 cut(s)	1044
Csp6I	GTAC	5 cut(s)	49, 280, 501, 552, 1671
CviAII	CATG	3 cut(s)	26, 557, 1192
CviQI	GTAC	5 cut(s)	49, 280, 501, 552, 1671
DdeI	CTNAG	6 cut(s)	324, 378, 819, 1102, 1458, 1601
DpnI	GATC	8 cut(s)	417, 435, 450, 455, 567, 817, 1099, 1209
DpnII	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
Eam1104I	CTCTTC	1 cut(s)	1341
EarI	CTCTTC	1 cut(s)	1341
Eco31I	GGTCTC	1 cut(s)	1443
Eco57I	CTGAAG	3 cut(s)	791, 1392, 1659
Eco81I	CCTNAGG	1 cut(s)	1458
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	3 cut(s)	310, 1133, 1636
FaeI	CATG	3 cut(s)	29, 560, 1195
FaqI	GGGAC	2 cut(s)	639, 692
FatI	CATG	3 cut(s)	25, 556, 1191
FauI	CCCGC	1 cut(s)	455
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	171, 174, 366, 1370, 1464
FokI	GGATG	2 cut(s)	575, 590
Fsp4HI	GCNGC	5 cut(s)	171, 174, 366, 1370, 1464
FspBI	CTAG	9 cut(s)	30, 369, 651, 918, 951, 984, 1017, 1200, 1442
GluI	GCNGC	5 cut(s)	171, 174, 366, 1370, 1464
GsuI	CTGGAG	4 cut(s)	410, 756, 855, 1324
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	671
HgaI	GACGC	1 cut(s)	1044
Hin1II	CATG	3 cut(s)	29, 560, 1195
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	125, 236, 1223, 1391
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	6 cut(s)	25, 134, 261, 580, 1188, 1224
Hpy166II	GTNNAC	2 cut(s)	51, 261
Hpy188I	TCNGA	9 cut(s)	327, 430, 438, 453, 810, 822, 1222, 1292, 1678
Hpy188III	TCNNGA	5 cut(s)	200, 389, 521, 671, 773
Hpy8I	GTNNAC	2 cut(s)	51, 261
HpyAV	CCTTC	5 cut(s)	112, 433, 805, 817, 1158
HpyCH4III	ACNGT	3 cut(s)	55, 243, 494
HpyCH4IV	ACGT	1 cut(s)	1307
HpyCH4V	TGCA	8 cut(s)	110, 409, 802, 1082, 1091, 1189, 1214, 1552
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 374, 391, 400, 1088, 1647
HpyF3I	CTNAG	6 cut(s)	324, 378, 819, 1102, 1458, 1601
HpySE526I	ACGT	1 cut(s)	1307
Hsp92II	CATG	3 cut(s)	29, 560, 1195
Kpn2I	TCCGGA	1 cut(s)	670
Ksp22I	TGATCA	1 cut(s)	433
KspI	CCGCGG	1 cut(s)	1651
Kzo9I	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
LmnI	GCTCC	6 cut(s)	382, 391, 775, 1137, 1419, 1471
Lsp1109I	GCAGC	5 cut(s)	160, 182, 352, 1381, 1450
LweI	GCATC	2 cut(s)	139, 811
MaeI	CTAG	9 cut(s)	30, 369, 651, 918, 951, 984, 1017, 1200, 1442
MaeII	ACGT	1 cut(s)	1307
MaeIII	GTNAC	3 cut(s)	643, 826, 1194
MalI	GATC	8 cut(s)	417, 435, 450, 455, 567, 817, 1099, 1209
MboI	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
MboII	GAAGA	8 cut(s)	177, 299, 370, 641, 797, 883, 1347, 1358
MflI	RGATCY	2 cut(s)	815, 1207
MhlI	GDGCHC	2 cut(s)	469, 1416
MluCI	AATT	8 cut(s)	181, 477, 514, 529, 735, 879, 1318, 1615
MmeI	TCCRAC	1 cut(s)	1582
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	6 cut(s)	485, 780, 867, 1302, 1614, 1620
MslI	CAYNNNNRTG	3 cut(s)	11, 561, 1409
MspA1I	CMGCKG	2 cut(s)	173, 1650
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	3 cut(s)	312, 1135, 1638
MvaI	CCWGG	3 cut(s)	312, 1135, 1638
MvnI	CGCG	1 cut(s)	1650
MwoI	GCNNNNNNNGC	6 cut(s)	149, 374, 391, 400, 1088, 1647
NdeII	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
NlaIII	CATG	3 cut(s)	29, 560, 1195
NlaIV	GGNNCC	2 cut(s)	771, 1209
NmuCI	GTSAC	1 cut(s)	1194
NspI	RCATGY	1 cut(s)	1195
OliI	CACNNNNGTG	1 cut(s)	1409
PaqCI	CACCTGC	1 cut(s)	1096
PciI	ACATGT	1 cut(s)	1191
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	4 cut(s)	125, 236, 1223, 1391
PflFI	GACNNNGTC	2 cut(s)	1286, 1608
PkrI	GCNGC	5 cut(s)	172, 175, 367, 1371, 1465
PscI	ACATGT	1 cut(s)	1191
Psp6I	CCWGG	3 cut(s)	310, 1133, 1636
PspGI	CCWGG	3 cut(s)	310, 1133, 1636
PspN4I	GGNNCC	2 cut(s)	771, 1209
PspPI	GGNCC	1 cut(s)	333
PsuI	RGATCY	2 cut(s)	815, 1207
PsyI	GACNNNGTC	2 cut(s)	1286, 1608
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	5 cut(s)	50, 281, 502, 553, 1672
RsaNI	GTAC	5 cut(s)	49, 280, 501, 552, 1671
RseI	CAYNNNNRTG	3 cut(s)	11, 561, 1409
SacII	CCGCGG	1 cut(s)	1651
SaqAI	TTAA	6 cut(s)	485, 780, 867, 1302, 1614, 1620
SatI	GCNGC	5 cut(s)	171, 174, 366, 1370, 1464
Sau3AI	GATC	8 cut(s)	415, 433, 448, 453, 565, 815, 1097, 1207
Sau96I	GGNCC	1 cut(s)	333
ScaI	AGTACT	4 cut(s)	281, 502, 553, 1672
ScrFI	CCNGG	3 cut(s)	312, 1135, 1638
SduI	GDGCHC	2 cut(s)	469, 1416
SfaNI	GCATC	2 cut(s)	139, 811
Sfr303I	CCGCGG	1 cut(s)	1651
SgrBI	CCGCGG	1 cut(s)	1651
SmiMI	CAYNNNNRTG	3 cut(s)	11, 561, 1409
SmlI	CTYRAG	2 cut(s)	569, 720
SmoI	CTYRAG	2 cut(s)	569, 720
Sse9I	AATT	8 cut(s)	181, 477, 514, 529, 735, 879, 1318, 1615
SsiI	CCGC	4 cut(s)	462, 1242, 1648, 1650
SspMI	CTAG	9 cut(s)	30, 369, 651, 918, 951, 984, 1017, 1200, 1442
StyD4I	CCNGG	3 cut(s)	310, 1133, 1636
TaaI	ACNGT	3 cut(s)	55, 243, 494
TaiI	ACGT	1 cut(s)	1310
TaqI	TCGA	1 cut(s)	456
TasI	AATT	8 cut(s)	181, 477, 514, 529, 735, 879, 1318, 1615
TatI	WGTACW	5 cut(s)	48, 279, 500, 551, 1670
TfiI	GAWTC	4 cut(s)	125, 236, 1223, 1391
Tru1I	TTAA	6 cut(s)	485, 780, 867, 1302, 1614, 1620
Tru9I	TTAA	6 cut(s)	485, 780, 867, 1302, 1614, 1620
TscAI	CASTG	4 cut(s)	246, 324, 1348, 1416
TseFI	GTSAC	1 cut(s)	1194
TseI	GCWGC	5 cut(s)	170, 173, 365, 1369, 1463
Tsp45I	GTSAC	1 cut(s)	1194
TspDTI	ATGAA	5 cut(s)	771, 1113, 1246, 1509, 1713
TspRI	CASTG	4 cut(s)	246, 324, 1348, 1416
Tth111I	GACNNNGTC	2 cut(s)	1286, 1608
XapI	RAATTY	2 cut(s)	181, 735
XceI	RCATGY	1 cut(s)	1195
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	9 cut(s)	30, 369, 651, 918, 951, 984, 1017, 1200, 1442
ZrmI	AGTACT	4 cut(s)	281, 502, 553, 1672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.