Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003792

Physical Location & Seq

Genomic Coordinates Reverse (-)

67941615 .. 67948738

Gene Structure 7124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG443500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTGAATCAATAGTGGGTTTTCCAAAAGATGCTGATAAGATGGGAGAGATAGCTGGTACAGATTCATCAAATCCTTCTCTGGAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATTCATTATCTTGGGAGAAATGGTCGGCATTTTCGCCAAATAAGTACTTGGAAGAAGTTGAGAAGTGTGCTACTCCTGGTTCGGTAGCTCAGAAAAGGGCTTATTTTGAAGCTCATTACAAGAGGATAGCTGCTCGAAAAGCCGAGGAGCTTCTGGAACAAGAGAAGCAAATGCAAGATGATGATCCCTTAAAGTCAGATGATCAAAATAATGGAGATCAGATCTGTTGTGGTACGGATTATGGAATTGATGTAGCTACCAGTCAAACTAGTGCTCAAGCAAATAGTCAAGAGCCCAATATAGAGAATGGGATGAGCAGTACTCATGTGGAAGATCTCAAGGAGGAGGATGATGAGGATGTTTTCACTATGGAATGTCAAACATCATCGATTGAGGGTAGAGAAATAGAGGAAACTGATAGCGGAGTGGTTAGTCCGAAGACTCCAAAGCTGAACAGACCAGAAGAACTTGTTTTGGTAAAAGAAGTGGAAACCATCACTGCTGACACTCAAGAAACAATACAGCCAGTTCCAAAGACTTTGGACAGTGATACAGGCAATGCTCCAGAAGTTAAAGAGGAAAAAGCGAGATTCGATCTTCAGAAGAGATCTCAGAAGGTTACTCCAGTGAGCAAGGAGAGGACAGTGGCAAAGGCCAAGAAGAAATCAATTTCACCAATGACTAAAACACCTCAGAATCCGACCCCTAGAGTGTCAAAGTTACCACAGAATTCCACCCCTAGAGTGTCAAAGATACCGCAGAATACTACCCCTAGAGTGTCAAAGATACTGCAGAATACCACCCCTAGTGTGTCAAAGCCAATATCAGCTCCTACCGGAGCAAAATCTGCACCACGATCCTCAGTAACGAAGGCCAATGGTTCATCTTTAACTAGGAGCACAAATCAGTCAAGTGAAAAAACCAAGAAAGTGCCTCCTAAATCTCTGCACATGTCACTCAGTTTCAATCCTAAAAAGTCTGATTCAGCTTCAGAAACTGTGGTTACAGCTAGAAAATCTTTGATTATGGAGCAAATGGGTGATAAGGACATTGTCAAACGAGCATTCAAGACATTTCAAAACAGTGTCAACCAATTGAAATCCTCTAATGAAGAGAAACCTTCAGCACCAATGCAGGTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

420

Amino Acids

46.14

Weight (kDa)

5.94

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24160 AT1G24160 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100 AT1G70100
fragaria_vesca	FvH4_4g35241 FvH4_4g35241 FvH4_4g35241
malus_domestica	MD13G1085000.v1.1 MD16G1084200.v1.1
prunus_persica	Prupe.1G261800_v2.0.a1
pyrus_communis	pycom13g07350 pycom16g07320
rosa_chinensis	RchiOBHm_Chr4g0444851
rosa_laevigata	RLG00000005795
rosa_multiflora	Rmu_sc0006845.1_g000008 Rmu_sc0034891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007070 Rroxscaffold_5G00385340
rosa_rugosa	Rorug04G0355500 Rorug04G0355500 Rorug04G0355500 Rorug04G0355600 Rorug04G0355600
rosa_samantha	Rh1BG148900 Rh4AG417100 Rh4BG428900 Rh4CG443500 Rh4DG424700 Rh5BG510000
rosa_wichuraiana	Rw4G035750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1243
AciI	CCGC	2 cut(s)	540, 875
AclWI	GGATC	2 cut(s)	296, 969
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	3 cut(s)	701, 1092, 1224
AfaI	GTAC	4 cut(s)	61, 164, 352, 439
AflIII	ACRYGT	1 cut(s)	1068
AgsI	TTSAA	5 cut(s)	227, 1084, 1186, 1196, 1216
AhlI	ACTAGT	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	193
Alw21I	GWGCWC	2 cut(s)	394, 1019
AlwI	GGATC	2 cut(s)	296, 969
AlwNI	CAGNNNCTG	1 cut(s)	1115
AoxI	GGCC	2 cut(s)	771, 990
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	847
AsuHPI	GGTGA	3 cut(s)	17, 783, 1169
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	2 cut(s)	394, 1019
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	2 cut(s)	37, 620
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	7 cut(s)	387, 825, 858, 891, 924, 1011, 1128
BfmI	CTRYAG	1 cut(s)	908
BfuAI	ACCTGC	1 cut(s)	1243
BglII	AGATCT	3 cut(s)	339, 451, 725
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmcAI	AGTACT	2 cut(s)	164, 439
Bme1390I	CCNGG	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	2 cut(s)	666, 726
BpuEI	CTTGAG	3 cut(s)	378, 440, 612
Bsa29I	ATCGAT	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	953
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse1I	ACTGG	3 cut(s)	378, 644, 743
Bse3DI	GCAATG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	435, 472, 481
BseJI	GATNNNNATC	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	5 cut(s)	221, 743, 824, 993, 1090
BseNI	ACTGG	3 cut(s)	378, 644, 743
BseRI	GAGGAG	2 cut(s)	278, 476
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	2 cut(s)	951, 1049
BshFI	GGCC	2 cut(s)	773, 992
BshVI	ATCGAT	1 cut(s)	506
BsiHKAI	GWGCWC	2 cut(s)	394, 1019
BsiSI	CCGG	1 cut(s)	954
BsmI	GAATGC	1 cut(s)	1181
BsnI	GGCC	2 cut(s)	773, 992
Bsp1286I	GDGCHC	3 cut(s)	394, 414, 1019
Bsp143I	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
BspACI	CCGC	2 cut(s)	540, 875
BspANI	GGCC	2 cut(s)	773, 992
BspCNI	CTCAG	5 cut(s)	220, 742, 823, 992, 1089
BspDI	ATCGAT	1 cut(s)	506
BspMAI	CTGCAG	1 cut(s)	912
BspMI	ACCTGC	1 cut(s)	1243
BspPI	GGATC	2 cut(s)	296, 969
BsrDI	GCAATG	1 cut(s)	682
BsrI	ACTGG	3 cut(s)	378, 644, 743
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	4 cut(s)	665, 763, 1117, 1202
Bst6I	CTCTTC	2 cut(s)	716, 1224
BstAPI	GCANNNNNTGC	1 cut(s)	965
BstDEI	CTNAG	5 cut(s)	207, 729, 810, 979, 1076
BstF5I	GGATG	3 cut(s)	435, 472, 481
BstKTI	GATC	8 cut(s)	304, 322, 337, 342, 454, 715, 728, 977
BstMBI	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 965
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	1072
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	908
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	3 cut(s)	339, 451, 725
BstYI	RGATCY	3 cut(s)	339, 451, 725
Bsu15I	ATCGAT	1 cut(s)	506
BsuRI	GGCC	2 cut(s)	773, 992
BsuTUI	ATCGAT	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	435, 472, 481
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	5 cut(s)	615, 670, 750, 768, 1207
BveI	ACCTGC	1 cut(s)	1243
CaiI	CAGNNNCTG	1 cut(s)	1115
ClaI	ATCGAT	1 cut(s)	506
Csp6I	GTAC	4 cut(s)	60, 163, 351, 438
CviAII	CATG	2 cut(s)	443, 1069
CviQI	GTAC	4 cut(s)	60, 163, 351, 438
DdeI	CTNAG	5 cut(s)	207, 729, 810, 979, 1076
DpnI	GATC	8 cut(s)	303, 321, 336, 341, 453, 714, 727, 976
DpnII	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
Eam1104I	CTCTTC	2 cut(s)	716, 1224
EarI	CTCTTC	2 cut(s)	716, 1224
Eco24I	GRGCYC	1 cut(s)	414
Eco57I	CTGAAG	3 cut(s)	701, 1092, 1224
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	2 cut(s)	446, 1072
FaiI	YATR	7 cut(s)	360, 419, 444, 488, 1070, 1145, 1258
FatI	CATG	2 cut(s)	442, 1068
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	3 cut(s)	442, 479, 488
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	7 cut(s)	387, 825, 858, 891, 924, 1011, 1128
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	2 cut(s)	666, 726
HaeIII	GGCC	2 cut(s)	773, 992
HapII	CCGG	1 cut(s)	954
Hin1II	CATG	2 cut(s)	446, 1072
HincII	GTYRAC	1 cut(s)	1207
HindII	GTYRAC	1 cut(s)	1207
HinfI	GANTC	7 cut(s)	8, 65, 119, 559, 708, 814, 1100
HpaII	CCGG	1 cut(s)	954
HphI	GGTGA	3 cut(s)	17, 783, 1169
Hpy166II	GTNNAC	1 cut(s)	1207
Hpy188III	TCNNGA	6 cut(s)	83, 272, 407, 629, 683, 1186
Hpy8I	GTNNAC	1 cut(s)	1207
HpyAV	CCTTC	4 cut(s)	87, 727, 982, 1248
HpyCH4III	ACNGT	4 cut(s)	665, 763, 1117, 1202
HpyCH4V	TGCA	5 cut(s)	292, 910, 968, 1066, 1252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 965
HpyF3I	CTNAG	5 cut(s)	207, 729, 810, 979, 1076
Hsp92II	CATG	2 cut(s)	446, 1072
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
LmnI	GCTCC	6 cut(s)	265, 685, 952, 956, 1014, 1147
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	7 cut(s)	387, 825, 858, 891, 924, 1011, 1128
MaeIII	GTNAC	5 cut(s)	736, 837, 982, 1071, 1120
MalI	GATC	8 cut(s)	303, 321, 336, 341, 453, 714, 727, 976
MboI	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
MboII	GAAGA	8 cut(s)	182, 461, 568, 593, 707, 733, 790, 1241
MfeI	CAATTG	1 cut(s)	1211
MflI	RGATCY	3 cut(s)	339, 451, 725
MhlI	GDGCHC	3 cut(s)	394, 414, 1019
MluCI	AATT	4 cut(s)	363, 786, 847, 1211
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	842
MseI	TTAA	4 cut(s)	308, 690, 1007, 1261
MspI	CCGG	1 cut(s)	954
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	1211
Mva1269I	GAATGC	1 cut(s)	1181
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	257, 965
NdeII	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
NlaIII	CATG	2 cut(s)	446, 1072
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	1071
NspI	RCATGY	1 cut(s)	1072
PciI	ACATGT	1 cut(s)	1068
PctI	GAATGC	1 cut(s)	1181
PfeI	GAWTC	6 cut(s)	8, 65, 119, 708, 814, 1100
PflFI	GACNNNGTC	1 cut(s)	1169
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PscI	ACATGT	1 cut(s)	1068
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	912
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	3 cut(s)	339, 451, 725
PsyI	GACNNNGTC	1 cut(s)	1169
RsaI	GTAC	4 cut(s)	61, 164, 352, 439
RsaNI	GTAC	4 cut(s)	60, 163, 351, 438
SaqAI	TTAA	4 cut(s)	308, 690, 1007, 1261
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	8 cut(s)	301, 319, 334, 339, 451, 712, 725, 974
ScaI	AGTACT	2 cut(s)	164, 439
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	3 cut(s)	394, 414, 1019
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	908
SmlI	CTYRAG	3 cut(s)	393, 455, 627
SmoI	CTYRAG	3 cut(s)	393, 455, 627
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	4 cut(s)	363, 786, 847, 1211
SsiI	CCGC	2 cut(s)	540, 875
SspMI	CTAG	7 cut(s)	387, 825, 858, 891, 924, 1011, 1128
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	4 cut(s)	665, 763, 1117, 1202
TaqI	TCGA	3 cut(s)	253, 506, 711
TasI	AATT	4 cut(s)	363, 786, 847, 1211
TatI	WGTACW	2 cut(s)	162, 437
TfiI	GAWTC	6 cut(s)	8, 65, 119, 708, 814, 1100
Tru1I	TTAA	4 cut(s)	308, 690, 1007, 1261
Tru9I	TTAA	4 cut(s)	308, 690, 1007, 1261
TscAI	CASTG	5 cut(s)	622, 670, 750, 768, 1207
TseFI	GTSAC	1 cut(s)	1071
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	1071
TspDTI	ATGAA	5 cut(s)	57, 87, 111, 990, 1242
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	5 cut(s)	622, 670, 750, 768, 1207
Tth111I	GACNNNGTC	1 cut(s)	1169
XapI	RAATTY	1 cut(s)	847
XceI	RCATGY	1 cut(s)	1072
XspI	CTAG	7 cut(s)	387, 825, 858, 891, 924, 1011, 1128
ZrmI	AGTACT	2 cut(s)	164, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.