AT1G27930

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005005
Physical Location & Seq
Reverse (-)
9730959 .. 9733000
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27930.1

Sequence Viewer

Length: 870 bp
ATGAACACGTTAATCCCATCGGAGAAAAGATGGATCATCACCGGCGTTTTACTAGCCGGTTTAGTTGGCGGTGCTTTGCTTTTCACAAGCTTCATACGAGCCGCTGACGAAACGCTCTTCCTCTGTTCCACAGCAAGCGCCAAAAGCAGAGCGGTGGCTGCGGCAGCTGATTACGAAGCGACTCCGATTCAGCTTCAAGCGATCGTCCACTACGCGACATCTAACGTTGTCCCACAACAGAATCTTGCTGAGATCTCGATCTCTTTCAACATCTTGAAAAAGCTAGCTCCGGCTAACTTTCTCGTGTTCGGTCTCGGTCGTGACTCGCTCATGTGGGCTTCTTTAAATCCACGTGGCAAAACCTTGTTCTTGGAAGAAGATCTTGAATGGTTTCAGAAAGTGACCAAAGACTCTCCTTTCTTACGTGCGCATCACGTGCGTTACAGGACGCAGCTTCAACAAGCCGATTCGCTTCTACGTTCGTACAAAACGGAGCCTAAGTGTTTTCCGGCGAAATCTTATCTCCGGGGAAACGAGAAGTGTAAGCTAGCTCTCACGGGACTGCCCGATGAGTTCTACGATACAGAGTGGGATCTGCTGATGGTCGATGCTCCTAAAGGTTACTTCGCAGAAGCTCCGGGAAGAATGGCGGCGATTTTCTCGGCGGCTGTTATGGCTAGGAACCGGAAGAAACCGGGAGTTACGCACGTGTTCTTGCACGATGTTAATCGGAGGGTGGAGAAGACTTTTGCCGAGGAGTTTTTATGCCGGAAGTATAGAGTCAACGCCGCCGGGAGGTTATGGCATTTTGCTATTCCTCCGGCGGCTGCGAACGCTACGATTGACTCTGGTGATTATAGGTTTTGCTAA

Protein Analysis

289

Amino Acids

32.36

Weight (kDa)

9.24

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 83 - 270 3.7e-86 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 429
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 215
AciI CCGC 8 cut(s) 69, 102, 152, 161, 650, 665, 789, 824
AclI AACGTT 1 cut(s) 225
AclWI GGATC 2 cut(s) 41, 600
AcvI CACGTG 3 cut(s) 353, 436, 709
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 795
AflIII ACRYGT 2 cut(s) 6, 708
AgsI TTSAA 5 cut(s) 197, 268, 277, 386, 458
AluBI AGCT 9 cut(s) 90, 167, 193, 283, 287, 454, 547, 551, 635
AluI AGCT 9 cut(s) 90, 167, 193, 283, 287, 454, 547, 551, 635
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 2 cut(s) 41, 600
ApeKI GCWGC 4 cut(s) 158, 164, 451, 827
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 2 cut(s) 140, 430
AsuC2I CCSGG 4 cut(s) 527, 639, 696, 793
AsuHPI GGTGA 2 cut(s) 31, 863
AsuNHI GCTAGC 2 cut(s) 283, 547
BauI CACGAG 1 cut(s) 302
BbrPI CACGTG 3 cut(s) 353, 436, 709
BbsI GAAGAC 1 cut(s) 749
BbvI GCAGC 4 cut(s) 145, 176, 463, 814
BccI CCATC 3 cut(s) 24, 25, 595
BcnI CCSGG 4 cut(s) 527, 639, 696, 793
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 4 cut(s) 53, 284, 548, 678
BfoI RGCGCY 1 cut(s) 141
BglII AGATCT 2 cut(s) 252, 379
Bme1390I CCNGG 4 cut(s) 527, 639, 696, 793
BmiI GGNNCC 2 cut(s) 495, 683
BmrFI CCNGG 4 cut(s) 527, 639, 696, 793
BmsI GCATC 2 cut(s) 439, 598
BmtI GCTAGC 2 cut(s) 287, 551
BpiI GAAGAC 1 cut(s) 749
BpuMI CCSGG 4 cut(s) 527, 639, 696, 793
BsaAI YACGTR 4 cut(s) 353, 425, 436, 709
BsaBI GATNNNNATC 2 cut(s) 257, 726
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 526, 753
BsaWI WCCGGW 1 cut(s) 684
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 795
Bse118I RCCGGY 2 cut(s) 41, 56
Bse8I GATNNNNATC 2 cut(s) 257, 726
BseDI CCNNGG 2 cut(s) 526, 753
BseJI GATNNNNATC 2 cut(s) 257, 726
BseLI CCNNNNNNNGG 1 cut(s) 795
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 770
BseXI GCAGC 4 cut(s) 145, 176, 463, 814
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 2 cut(s) 204, 319
BsiEI CGRYCG 2 cut(s) 204, 319
BslFI GGGAC 2 cut(s) 215, 573
BslI CCNNNNNNNGG 1 cut(s) 795
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 215, 573
Bso31I GGTCTC 1 cut(s) 317
Bsp143I GATC 6 cut(s) 33, 201, 252, 258, 379, 592
BspACI CCGC 8 cut(s) 69, 102, 152, 161, 650, 665, 789, 824
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 2 cut(s) 495, 683
BspOI GCTAGC 2 cut(s) 287, 551
BspPI GGATC 2 cut(s) 41, 600
BspQI GCTCTTC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 152
BsrFI RCCGGY 2 cut(s) 41, 56
BssAI RCCGGY 2 cut(s) 41, 56
BssECI CCNNGG 2 cut(s) 526, 753
BssMI GATC 6 cut(s) 33, 201, 252, 258, 379, 592
BssSI CACGAG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 436
BstBAI YACGTR 4 cut(s) 353, 425, 436, 709
BstC8I GCNNGC 3 cut(s) 136, 285, 549
BstDEI CTNAG 2 cut(s) 249, 498
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 430
BstKTI GATC 6 cut(s) 36, 204, 255, 261, 382, 595
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 6 cut(s) 33, 201, 252, 258, 379, 592
BstMCI CGRYCG 2 cut(s) 204, 319
BstMWI GCNNNNNNNGC 6 cut(s) 144, 158, 164, 436, 674, 833
BstSCI CCNGG 4 cut(s) 525, 637, 694, 791
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 4 cut(s) 145, 176, 463, 814
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 3 cut(s) 252, 379, 592
BstYI RGATCY 3 cut(s) 252, 379, 592
Cac8I GCNNGC 3 cut(s) 136, 285, 549
CfoI GCGC 2 cut(s) 140, 430
Cfr10I RCCGGY 2 cut(s) 41, 56
CseI GACGC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 484
CviAII CATG 1 cut(s) 331
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 2 cut(s) 249, 498
DpnI GATC 6 cut(s) 35, 203, 254, 260, 381, 594
DpnII GATC 6 cut(s) 33, 201, 252, 258, 379, 592
DraI TTTAAA 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 317
Eco72I CACGTG 3 cut(s) 353, 436, 709
FaeI CATG 1 cut(s) 334
FaiI YATR 7 cut(s) 95, 332, 674, 766, 777, 802, 858
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 2 cut(s) 215, 573
FatI CATG 1 cut(s) 330
FspAI RTGCGCAY 1 cut(s) 429
FspBI CTAG 4 cut(s) 53, 284, 548, 678
FspI TGCGCA 1 cut(s) 429
GlaI GCGC 2 cut(s) 139, 429
HaeII RGCGCY 1 cut(s) 141
HgaI GACGC 1 cut(s) 457
HhaI GCGC 2 cut(s) 140, 430
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 2 cut(s) 138, 428
HinP1I GCGC 2 cut(s) 138, 428
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 8 cut(s) 181, 187, 241, 323, 410, 467, 780, 845
HphI GGTGA 2 cut(s) 31, 863
Hpy166II GTNNAC 2 cut(s) 208, 784
Hpy188I TCNGA 4 cut(s) 22, 186, 396, 732
Hpy188III TCNNGA 4 cut(s) 256, 274, 320, 383
Hpy8I GTNNAC 2 cut(s) 208, 784
HpyCH4IV ACGT 7 cut(s) 8, 225, 352, 424, 435, 478, 708
HpyCH4V TGCA 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 158, 164, 436, 674, 833
HpyF3I CTNAG 2 cut(s) 249, 498
HpySE526I ACGT 7 cut(s) 8, 225, 352, 424, 435, 478, 708
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 2 cut(s) 138, 428
Kzo9I GATC 6 cut(s) 33, 201, 252, 258, 379, 592
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 4 cut(s) 292, 493, 616, 640
Lsp1109I GCAGC 4 cut(s) 145, 176, 463, 814
LweI GCATC 2 cut(s) 439, 598
MaeI CTAG 4 cut(s) 53, 284, 548, 678
MaeII ACGT 7 cut(s) 8, 225, 352, 424, 435, 478, 708
MaeIII GTNAC 5 cut(s) 320, 400, 440, 620, 700
MalI GATC 6 cut(s) 35, 203, 254, 260, 381, 594
MbiI CCGCTC 1 cut(s) 152
MboI GATC 6 cut(s) 33, 201, 252, 258, 379, 592
MboII GAAGA 6 cut(s) 109, 386, 389, 654, 700, 754
MflI RGATCY 3 cut(s) 252, 379, 592
MlyI GAGTC 5 cut(s) 175, 317, 404, 789, 839
MnlI CCTC 5 cut(s) 131, 726, 748, 789, 828
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 3 cut(s) 11, 344, 726
MspA1I CMGCKG 2 cut(s) 104, 167
MspR9I CCNGG 4 cut(s) 527, 639, 696, 793
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 6 cut(s) 144, 158, 164, 436, 674, 833
NciI CCSGG 4 cut(s) 527, 639, 696, 793
NdeII GATC 6 cut(s) 33, 201, 252, 258, 379, 592
NheI GCTAGC 2 cut(s) 283, 547
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 2 cut(s) 495, 683
NmeAIII GCCGAG 2 cut(s) 641, 778
NmuCI GTSAC 2 cut(s) 320, 400
NsbI TGCGCA 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 187, 241, 467
PfoI TCCNGGA 1 cut(s) 637
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 5 cut(s) 175, 317, 404, 788, 839
PmaCI CACGTG 3 cut(s) 353, 436, 709
PmlI CACGTG 3 cut(s) 353, 436, 709
PpsI GAGTC 5 cut(s) 175, 317, 404, 788, 839
Ppu21I YACGTR 4 cut(s) 353, 425, 436, 709
Psp1406I AACGTT 1 cut(s) 225
PspCI CACGTG 3 cut(s) 353, 436, 709
PspN4I GGNNCC 2 cut(s) 495, 683
PsuI RGATCY 3 cut(s) 252, 379, 592
PvuI CGATCG 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 3 cut(s) 11, 344, 726
Sau3AI GATC 6 cut(s) 33, 201, 252, 258, 379, 592
SchI GAGTC 5 cut(s) 175, 317, 404, 789, 839
ScrFI CCNGG 4 cut(s) 527, 639, 696, 793
SfaNI GCATC 2 cut(s) 439, 598
SgrAI CRCCGGYG 1 cut(s) 41
SsiI CCGC 8 cut(s) 69, 102, 152, 161, 650, 665, 789, 824
SspMI CTAG 4 cut(s) 53, 284, 548, 678
StyD4I CCNGG 4 cut(s) 525, 637, 694, 791
TaiI ACGT 7 cut(s) 11, 228, 355, 427, 438, 481, 711
TaqI TCGA 2 cut(s) 257, 606
TaqII GACCGA 2 cut(s) 299, 305
TauI GCSGC 6 cut(s) 104, 164, 653, 668, 791, 827
TfiI GAWTC 3 cut(s) 187, 241, 467
Tru1I TTAA 3 cut(s) 11, 344, 726
Tru9I TTAA 3 cut(s) 11, 344, 726
TseFI GTSAC 2 cut(s) 320, 400
TseI GCWGC 4 cut(s) 158, 164, 451, 827
Tsp45I GTSAC 2 cut(s) 320, 400
TspDTI ATGAA 2 cut(s) 17, 82
TspGWI ACGGA 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 4 cut(s) 53, 284, 548, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.