RLG00000006999

Polysaccharide biosynthesis

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
12578141 .. 12578959
819 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006999

Sequence Viewer

Length: 819 bp
ATGAAGAATCGGAGCAATCTAAAGGGATTGTTGGCCGCCATTTTGGTCTTCTTCCTCGGCGCCGCGCTTTTGATCTCCAGCCTTACCGGAACCGGAACCCCCTTCCTCTGCTCTCTGCCTAAATTTGTTGACGACTATACCCCCACAGCGGTTCAGCTCCAGGCGGTGCTCCACTACGCCACGTCCCATACGACCCCGCAGCAATCGAGAGGCGAGATCGGCGTCTCCTTCGAGGTCCTCAAATCGCGGGCGCCGTGCAACTTTCTCGTATTCGGTCTCGGCCACGACTCCCTCATGTGGGCCTCGTTTAACCCACGTGGCACGACGCTGTTCCTTGAGGAGGATCCTAAGTGGGTCCAGACCATCCTGAAGGACGCGCCGGAGTTGCGGGCTGAGACCGTGAACTACCGCACGCAGCTGAAGCAGGCGGACGAGCTGCTCTCCTCGTACAAATCCGAACCAGCGTGCGCGCCGTCCGGGGTGATCCTACGTGGCAACGAGCGGTGCAAGCTGGCGCTGAGCAACCTGCCGGACGAGGTGTACGAGAAGGAGTGGGACCTGATCATGATCGACGCGCCGCGGGGTTATTTTCCCGAGGCGCCTGGTCGGATGGCGGCTATATTTTCGGCGGCTGTCATGGCCAGGAGGAGGCGGGGATCAGGTGCCACGCACGTGTTCTTGCACGACGTGGACCGGAAGGTGGAGAAGGCTTTTGCCGAGGAGTTCCTCTGCCGGAAGTACCTTGTTAAGGAAGTCGGGAGGCTCTGGCATTTTGAGATTCCTTCAGCCACCGACGCCGCCGGCGCGCATTTTTGCTAA

Protein Analysis

273

Amino Acids

30.24

Weight (kDa)

7.65

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 72 - 258 7.1e-84 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 4 cut(s) 59, 250, 598, 662
AccBSI CCGCTC 1 cut(s) 502
AccII CGCG 7 cut(s) 65, 247, 377, 470, 575, 580, 806
AclWI GGATC 4 cut(s) 338, 351, 478, 664
AcoI YGGCCR 3 cut(s) 33, 280, 639
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 3 cut(s) 389, 440, 768
AcvI CACGTG 2 cut(s) 317, 673
AcyI GRCGYC 5 cut(s) 60, 222, 251, 599, 795
AdeI CACNNNGTG 1 cut(s) 688
AfaI GTAC 3 cut(s) 449, 542, 740
AfiI CCNNNNNNNGG 7 cut(s) 148, 297, 298, 340, 648, 700, 748
AflIII ACRYGT 1 cut(s) 672
AjiI CACGTC 2 cut(s) 183, 688
AjnI CCWGG 3 cut(s) 159, 601, 641
AleI CACNNNNGTG 1 cut(s) 671
AluBI AGCT 4 cut(s) 157, 418, 436, 511
AluI AGCT 4 cut(s) 157, 418, 436, 511
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 3 cut(s) 229, 281, 389
AlwI GGATC 4 cut(s) 338, 351, 478, 664
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 4 cut(s) 33, 280, 300, 639
ApeKI GCWGC 3 cut(s) 199, 415, 436
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 5 cut(s) 235, 300, 355, 556, 691
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 4 cut(s) 235, 355, 556, 691
BalI TGGCCA 1 cut(s) 641
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 4 cut(s) 59, 250, 598, 662
BbrPI CACGTG 2 cut(s) 317, 673
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 211, 423, 427
BccI CCATC 2 cut(s) 371, 604
BceAI ACGGC 2 cut(s) 238, 457
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 3 cut(s) 161, 603, 643
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 1 cut(s) 478
BcoDI GTCTC 3 cut(s) 229, 281, 389
BfoI RGCGCY 4 cut(s) 63, 254, 518, 602
BfuAI ACCTGC 1 cut(s) 534
BisI GCNGC 9 cut(s) 36, 63, 200, 416, 437, 578, 615, 630, 798
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 9 cut(s) 37, 64, 201, 417, 438, 579, 616, 631, 799
Bme1390I CCNGG 4 cut(s) 161, 478, 603, 643
Bme18I GGWCC 4 cut(s) 235, 355, 556, 691
BmeT110I CYCGRG 1 cut(s) 593
BmgBI CACGTC 2 cut(s) 183, 688
BmgT120I GGNCC 5 cut(s) 235, 300, 355, 556, 691
BmiI GGNNCC 9 cut(s) 61, 91, 97, 252, 345, 356, 557, 600, 664
BmrFI CCNGG 4 cut(s) 161, 478, 603, 643
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 2 cut(s) 61, 143
Bpu1102I GCTNAGC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 478
BsaAI YACGTR 3 cut(s) 317, 491, 673
BsaBI GATNNNNATC 1 cut(s) 566
BsaHI GRCGYC 5 cut(s) 60, 222, 251, 599, 795
BsaI GGTCTC 2 cut(s) 281, 389
BsaJI CCNNGG 5 cut(s) 55, 477, 578, 594, 717
BsaWI WCCGGW 3 cut(s) 86, 92, 693
Bsc4I CCNNNNNNNGG 7 cut(s) 148, 297, 298, 340, 648, 700, 748
Bse118I RCCGGY 1 cut(s) 800
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 3 cut(s) 161, 603, 643
BseDI CCNNGG 5 cut(s) 55, 477, 578, 594, 717
BseGI GGATG 2 cut(s) 363, 615
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 7 cut(s) 148, 297, 298, 340, 648, 700, 748
BseMII CTCAG 2 cut(s) 384, 509
BsePI GCGCGC 2 cut(s) 468, 804
BseRI GAGGAG 4 cut(s) 353, 433, 661, 734
BseXI GCAGC 3 cut(s) 211, 423, 427
Bsh1236I CGCG 7 cut(s) 65, 247, 377, 470, 575, 580, 806
BshFI GGCC 4 cut(s) 35, 282, 302, 641
BshNI GGYRCC 4 cut(s) 59, 250, 598, 662
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 8 cut(s) 87, 93, 380, 477, 530, 694, 733, 801
BslFI GGGAC 2 cut(s) 169, 569
BslI CCNNNNNNNGG 7 cut(s) 148, 297, 298, 340, 648, 700, 748
BsmAI GTCTC 3 cut(s) 229, 281, 389
BsmBI CGTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 169, 569
BsnI GGCC 4 cut(s) 35, 282, 302, 641
Bso31I GGTCTC 2 cut(s) 281, 389
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
Bsp1720I GCTNAGC 1 cut(s) 518
BspANI GGCC 4 cut(s) 35, 282, 302, 641
BspCNI CTCAG 2 cut(s) 385, 510
BspFNI CGCG 7 cut(s) 65, 247, 377, 470, 575, 580, 806
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 9 cut(s) 61, 91, 97, 252, 345, 356, 557, 600, 664
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 4 cut(s) 338, 351, 478, 664
BspT107I GGYRCC 4 cut(s) 59, 250, 598, 662
BspTNI GGTCTC 2 cut(s) 281, 389
BsrBI CCGCTC 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 800
BssAI RCCGGY 1 cut(s) 800
BssECI CCNNGG 5 cut(s) 55, 477, 578, 594, 717
BssHII GCGCGC 2 cut(s) 468, 804
BssMI GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
BssNI GRCGYC 5 cut(s) 60, 222, 251, 599, 795
Bst2UI CCWGG 3 cut(s) 161, 603, 643
Bst4CI ACNGT 1 cut(s) 400
BstACI GRCGYC 5 cut(s) 60, 222, 251, 599, 795
BstBAI YACGTR 3 cut(s) 317, 491, 673
BstDEI CTNAG 3 cut(s) 348, 393, 518
BstDSI CCRYGG 1 cut(s) 578
BstENI CCTNNNNNAGG 2 cut(s) 338, 746
BstF5I GGATG 2 cut(s) 363, 615
BstFNI CGCG 7 cut(s) 65, 247, 377, 470, 575, 580, 806
BstH2I RGCGCY 4 cut(s) 63, 254, 518, 602
BstKTI GATC 7 cut(s) 75, 219, 346, 486, 564, 570, 659
BstMAI GTCTC 3 cut(s) 229, 281, 389
BstMBI GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
BstMWI GCNNNNNNNGC 7 cut(s) 219, 385, 421, 508, 638, 794, 803
BstNI CCWGG 3 cut(s) 161, 603, 643
BstSCI CCNGG 4 cut(s) 159, 476, 601, 641
BstUI CGCG 7 cut(s) 65, 247, 377, 470, 575, 580, 806
BstV1I GCAGC 3 cut(s) 211, 423, 427
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 4 cut(s) 35, 282, 302, 641
BtgI CCRYGG 1 cut(s) 578
BtrI CACGTC 2 cut(s) 183, 688
BtsCI GGATG 2 cut(s) 363, 615
BveI ACCTGC 1 cut(s) 534
CciI TCATGA 1 cut(s) 564
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 5 cut(s) 235, 300, 355, 556, 691
Cfr42I CCGCGG 1 cut(s) 581
CseI GACGC 5 cut(s) 211, 334, 383, 581, 803
Csp6I GTAC 3 cut(s) 448, 541, 739
CviAII CATG 3 cut(s) 295, 565, 637
CviQI GTAC 3 cut(s) 448, 541, 739
DdeI CTNAG 3 cut(s) 348, 393, 518
DinI GGCGCC 3 cut(s) 61, 252, 600
DpnI GATC 7 cut(s) 74, 218, 345, 485, 563, 569, 658
DpnII GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
DraIII CACNNNGTG 1 cut(s) 688
EaeI YGGCCR 3 cut(s) 33, 280, 639
EciI GGCGGA 1 cut(s) 443
Eco31I GGTCTC 2 cut(s) 281, 389
Eco47I GGWCC 4 cut(s) 235, 355, 556, 691
Eco57I CTGAAG 3 cut(s) 389, 440, 768
Eco72I CACGTG 2 cut(s) 317, 673
Eco88I CYCGRG 1 cut(s) 593
EcoNI CCTNNNNNAGG 2 cut(s) 338, 746
EcoO109I RGGNCCY 2 cut(s) 235, 556
EcoRII CCWGG 3 cut(s) 159, 601, 641
EgeI GGCGCC 3 cut(s) 61, 252, 600
EheI GGCGCC 3 cut(s) 61, 252, 600
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 3 cut(s) 298, 568, 640
FaiI YATR 6 cut(s) 138, 189, 296, 566, 620, 638
FaqI GGGAC 2 cut(s) 169, 569
FatI CATG 3 cut(s) 294, 564, 636
FauI CCCGC 5 cut(s) 204, 240, 381, 573, 645
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 9 cut(s) 36, 63, 200, 416, 437, 578, 615, 630, 798
FokI GGATG 2 cut(s) 350, 622
Fsp4HI GCNGC 9 cut(s) 36, 63, 200, 416, 437, 578, 615, 630, 798
GluI GCNGC 9 cut(s) 36, 63, 200, 416, 437, 578, 615, 630, 798
GsuI CTGGAG 2 cut(s) 61, 143
HaeII RGCGCY 4 cut(s) 63, 254, 518, 602
HaeIII GGCC 4 cut(s) 35, 282, 302, 641
HapII CCGG 8 cut(s) 87, 93, 380, 477, 530, 694, 733, 801
HgaI GACGC 5 cut(s) 211, 334, 383, 581, 803
Hin1I GRCGYC 5 cut(s) 60, 222, 251, 599, 795
Hin1II CATG 3 cut(s) 298, 568, 640
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 7, 287, 778
HpaII CCGG 8 cut(s) 87, 93, 380, 477, 530, 694, 733, 801
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 4 cut(s) 130, 403, 541, 691
Hpy188I TCNGA 3 cut(s) 12, 457, 609
Hpy188III TCNNGA 6 cut(s) 207, 358, 367, 565, 593, 757
Hpy8I GTNNAC 4 cut(s) 130, 403, 541, 691
Hpy99I CGWCG 4 cut(s) 328, 575, 689, 797
HpyAV CCTTC 7 cut(s) 112, 238, 364, 541, 691, 700, 792
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 5 cut(s) 182, 316, 490, 672, 687
HpyCH4V TGCA 3 cut(s) 258, 507, 682
HpyF10VI GCNNNNNNNGC 7 cut(s) 219, 385, 421, 508, 638, 794, 803
HpyF3I CTNAG 3 cut(s) 348, 393, 518
HpySE526I ACGT 5 cut(s) 182, 316, 490, 672, 687
Hsp92I GRCGYC 5 cut(s) 60, 222, 251, 599, 795
Hsp92II CATG 3 cut(s) 298, 568, 640
KasI GGCGCC 3 cut(s) 59, 250, 598
KroI GCCGGC 1 cut(s) 800
KroNI GCCGGC 1 cut(s) 802
Ksp22I TGATCA 1 cut(s) 561
KspI CCGCGG 1 cut(s) 581
Kzo9I GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
LmnI GCTCC 3 cut(s) 12, 162, 174
Lsp1109I GCAGC 3 cut(s) 211, 423, 427
MaeII ACGT 5 cut(s) 182, 316, 490, 672, 687
MalI GATC 7 cut(s) 74, 218, 345, 485, 563, 569, 658
MbiI CCGCTC 1 cut(s) 502
MboI GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
MboII GAAGA 3 cut(s) 16, 40, 43
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 641
Mly113I GGCGCC 3 cut(s) 60, 251, 599
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 587
Mox20I TGGCCA 1 cut(s) 641
MreI CGCCGGCG 1 cut(s) 800
MroNI GCCGGC 1 cut(s) 800
MscI TGGCCA 1 cut(s) 641
MseI TTAA 2 cut(s) 309, 747
MslI CAYNNNNRTG 1 cut(s) 671
Msp20I TGGCCA 1 cut(s) 641
MspA1I CMGCKG 3 cut(s) 149, 418, 580
MspI CCGG 8 cut(s) 87, 93, 380, 477, 530, 694, 733, 801
MspR9I CCNGG 4 cut(s) 161, 478, 603, 643
MteI GCGCNGCGC 1 cut(s) 63
MvaI CCWGG 3 cut(s) 161, 603, 643
MvnI CGCG 7 cut(s) 65, 247, 377, 470, 575, 580, 806
MwoI GCNNNNNNNGC 7 cut(s) 219, 385, 421, 508, 638, 794, 803
NaeI GCCGGC 1 cut(s) 802
NarI GGCGCC 3 cut(s) 60, 251, 599
NciI CCSGG 1 cut(s) 478
NdeII GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
NgoMIV GCCGGC 1 cut(s) 800
NlaIII CATG 3 cut(s) 298, 568, 640
NlaIV GGNNCC 9 cut(s) 61, 91, 97, 252, 345, 356, 557, 600, 664
NmeAIII GCCGAG 3 cut(s) 36, 258, 742
OliI CACNNNNGTG 1 cut(s) 671
PagI TCATGA 1 cut(s) 564
PauI GCGCGC 2 cut(s) 468, 804
PcsI WCGNNNNNNNCGW 3 cut(s) 188, 251, 540
PdiI GCCGGC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 7, 778
PkrI GCNGC 9 cut(s) 37, 64, 201, 417, 438, 579, 616, 631, 799
PleI GAGTC 1 cut(s) 281
PluTI GGCGCC 3 cut(s) 63, 254, 602
PmaCI CACGTG 2 cut(s) 317, 673
PmlI CACGTG 2 cut(s) 317, 673
PpsI GAGTC 1 cut(s) 281
Ppu21I YACGTR 3 cut(s) 317, 491, 673
PpuMI RGGWCCY 2 cut(s) 235, 556
Psp5II RGGWCCY 2 cut(s) 235, 556
Psp6I CCWGG 3 cut(s) 159, 601, 641
PspCI CACGTG 2 cut(s) 317, 673
PspGI CCWGG 3 cut(s) 159, 601, 641
PspN4I GGNNCC 9 cut(s) 61, 91, 97, 252, 345, 356, 557, 600, 664
PspPI GGNCC 5 cut(s) 235, 300, 355, 556, 691
PspPPI RGGWCCY 2 cut(s) 235, 556
PsuI RGATCY 1 cut(s) 343
PteI GCGCGC 2 cut(s) 468, 804
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 3 cut(s) 449, 542, 740
RsaNI GTAC 3 cut(s) 448, 541, 739
RseI CAYNNNNRTG 1 cut(s) 671
SacII CCGCGG 1 cut(s) 581
SaqAI TTAA 2 cut(s) 309, 747
SatI GCNGC 9 cut(s) 36, 63, 200, 416, 437, 578, 615, 630, 798
Sau3AI GATC 7 cut(s) 72, 216, 343, 483, 561, 567, 656
Sau96I GGNCC 5 cut(s) 235, 300, 355, 556, 691
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 4 cut(s) 161, 478, 603, 643
SduI GDGCHC 1 cut(s) 171
SfoI GGCGCC 3 cut(s) 61, 252, 600
Sfr303I CCGCGG 1 cut(s) 581
SgrAI CRCCGGYG 1 cut(s) 800
SgrBI CCGCGG 1 cut(s) 581
SinI GGWCC 4 cut(s) 235, 355, 556, 691
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 122
SspDI GGCGCC 3 cut(s) 59, 250, 598
StyD4I CCNGG 4 cut(s) 159, 476, 601, 641
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 5 cut(s) 185, 319, 493, 675, 690
TaqI TCGA 3 cut(s) 206, 231, 570
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 122
TauI GCSGC 6 cut(s) 38, 65, 580, 617, 632, 800
TfiI GAWTC 2 cut(s) 7, 778
Tru1I TTAA 2 cut(s) 309, 747
Tru9I TTAA 2 cut(s) 309, 747
TseI GCWGC 3 cut(s) 199, 415, 436
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 4 cut(s) 235, 355, 556, 691
XagI CCTNNNNNAGG 2 cut(s) 338, 746
XapI RAATTY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.