Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005005

Physical Location & Seq

Genomic Coordinates Reverse (-)

40943762 .. 40944682

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0241000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGGAAGAAAGACAAGAATACGACTCGTTCCGGTGGTGTTGACCATCATGAAAATCCTGGAAATTATGGTGACCAATATTCTGAGCTTTTGGAGGTGCCGGTTAAGTATTTGAAAGCAGTTGAACGGAAGGTCGTTGTCGACAACTACGTTGAGTTAGAAGAAATCAAATTTGTGAAGGGGATGGAAAAGTTTCGTGTTTCCGAATCTGATGAACTTGATCAAGAGAAATTGAAGGCCGTGGAGACTCTAAAAGCTCGCCTTTTCAATCTTTATGATGAGCTCAACCCTGAAGGCATTTTGTTCCTCTGTTTTCTGTGGATGACAACGATGAAGACAGAATCGGAGGGAATAGAAAAGTGTCAACACTACTTAATACCTTCACTCCACTCCACAGAAAAATTATTTGATGAGGATATTGATATTTCTGTGCTGGCGGATTTGGCAGGCACACAACTGGAGAATATTAAAGCCTACAATTCAAAAAAATTAGCTTTACTGGAAGCTGAGAACTTGAACGAGGTGACGTTGCAGGAGATGGGCAATCACTACTCAAGTTTCTACAAAGGAATAAGGAGTTTGAACATGAAAATTGACATTTTGAGATTTCACTTAACGCACCGCCGGCGTGATCTCAAGACTTTGGGTGATCTCAAGACTTCGGTGGACAGATTTTCGGCATCGCTAGAAGGCGAACTCCGGCAATATGAGGAGGAACTAGAGACCACCAGGTTCAAAGTGTTTCAATTAGGGAAGAATCAGAAAACCAACTTGTTTGGACTTCGATGGTTACCTGATTCTTGGAAGGGAACTTTTTTTTCTAATGGCATGAAGCCATTTATTTTGGGTGCGAGACTGATGCATTGGATACAGGGATATAGTACGCTTCATAACATCAATGACAAAGAGAAAACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

306

Amino Acids

35.57

Weight (kDa)

6.04

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27930 AT1G67330
fragaria_vesca	FvH4_3g25190 FvH4_4g23680 FvH4_4g23700
malus_domestica	MD13G1119900.v1.1 MD13G1120100.v1.1 MD16G1120000.v1.1
prunus_persica	Prupe.1G225200_v2.0.a1
pyrus_communis	pycom13g10440 pycom16g10250
rosa_chinensis	RchiOBHm_Chr4g0430171 RchiOBHm_Chr5g0046131
rosa_laevigata	RLG00000006999
rosa_multiflora	Rmu_sc0001035.1_g000058 Rmu_sc0004036.1_g000003 Rmu_sc0006003.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035410 Rroxscaffold_5G00371970
rosa_rugosa	Rorug04G0241000 Rorug05G0225300
rosa_samantha	Rh4BG304200 Rh4CG319700 Rh4DG301700 Rh5AG306400 Rh5BG314600 Rh5CG341100 Rh5DG324900
rosa_wichuraiana	Rw4G025820 Rw5G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	2 cut(s)	437, 622
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	883
AgsI	TTSAA	9 cut(s)	115, 125, 235, 268, 483, 517, 583, 736, 746
AjnI	CCWGG	2 cut(s)	58, 728
AluBI	AGCT	5 cut(s)	88, 257, 283, 494, 506
AluI	AGCT	5 cut(s)	88, 257, 283, 494, 506
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	3 cut(s)	239, 716, 847
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	83, 535, 659
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	4 cut(s)	54, 178, 532, 780
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	841, 875
BciT130I	CCWGG	2 cut(s)	60, 730
BciVI	GTATCC	1 cut(s)	861
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	239, 716, 847
BfaI	CTAG	2 cut(s)	686, 719
BfuI	GTATCC	1 cut(s)	861
Bme1390I	CCNGG	2 cut(s)	60, 730
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	60, 730
BmsI	GCATC	2 cut(s)	689, 849
BpiI	GAAGAC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	479
BpuEI	CTTGAG	3 cut(s)	538, 620, 638
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse118I	RCCGGY	2 cut(s)	100, 624
Bse1I	ACTGG	2 cut(s)	462, 504
BseBI	CCWGG	2 cut(s)	60, 730
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	189, 327
BseMII	CTCAG	2 cut(s)	75, 498
BseNI	ACTGG	2 cut(s)	462, 504
BseRI	GAGGAG	1 cut(s)	725
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	4 cut(s)	33, 101, 625, 700
BsmAI	GTCTC	3 cut(s)	239, 716, 847
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	220, 631, 649
BspACI	CCGC	2 cut(s)	437, 622
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	76, 499
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	716
BsrFI	RCCGGY	2 cut(s)	100, 624
BsrI	ACTGG	2 cut(s)	462, 504
BssAI	RCCGGY	2 cut(s)	100, 624
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	220, 631, 649
Bst2UI	CCWGG	2 cut(s)	60, 730
BstC8I	GCNNGC	4 cut(s)	259, 435, 448, 626
BstDEI	CTNAG	2 cut(s)	84, 507
BstDSI	CCRYGG	1 cut(s)	240
BstEII	GGTNACC	2 cut(s)	71, 789
BstF5I	GGATG	2 cut(s)	189, 327
BstKTI	GATC	3 cut(s)	223, 634, 652
BstMAI	GTCTC	3 cut(s)	239, 716, 847
BstMBI	GATC	3 cut(s)	220, 631, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 625
BstNI	CCWGG	2 cut(s)	60, 730
BstPI	GGTNACC	2 cut(s)	71, 789
BstSCI	CCNGG	2 cut(s)	58, 728
BstV2I	GAAGAC	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	189, 327
Cac8I	GCNNGC	4 cut(s)	259, 435, 448, 626
CciI	TCATGA	1 cut(s)	49
Cfr10I	RCCGGY	2 cut(s)	100, 624
CsiI	ACCWGGT	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	882
CviAII	CATG	3 cut(s)	50, 586, 829
CviJI	RGCY	8 cut(s)	88, 239, 257, 283, 473, 494, 506, 835
CviKI_1	RGCY	8 cut(s)	88, 239, 257, 283, 473, 494, 506, 835
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	2 cut(s)	84, 507
DpnI	GATC	3 cut(s)	222, 633, 651
DpnII	GATC	3 cut(s)	220, 631, 649
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	312
Eco91I	GGTNACC	2 cut(s)	71, 789
EcoICRI	GAGCTC	1 cut(s)	283
EcoO65I	GGTNACC	2 cut(s)	71, 789
EcoRII	CCWGG	2 cut(s)	58, 728
EcoT22I	ATGCAT	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	3 cut(s)	53, 589, 832
FaiI	YATR	8 cut(s)	51, 69, 276, 587, 708, 830, 879, 891
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	3 cut(s)	49, 585, 828
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	141
FokI	GGATG	2 cut(s)	196, 334
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	686, 719
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	4 cut(s)	33, 101, 625, 700
Hin1II	CATG	3 cut(s)	53, 589, 832
HincII	GTYRAC	3 cut(s)	43, 142, 365
HindII	GTYRAC	3 cut(s)	43, 142, 365
HinfI	GANTC	6 cut(s)	25, 206, 247, 341, 757, 797
HpaII	CCGG	4 cut(s)	33, 101, 625, 700
HphI	GGTGA	3 cut(s)	83, 535, 659
Hpy166II	GTNNAC	4 cut(s)	43, 142, 365, 667
Hpy188I	TCNGA	6 cut(s)	85, 205, 211, 346, 762, 920
Hpy188III	TCNNGA	4 cut(s)	50, 224, 637, 655
Hpy8I	GTNNAC	4 cut(s)	43, 142, 365, 667
HpyAV	CCTTC	7 cut(s)	124, 172, 229, 287, 390, 683, 799
HpyCH4IV	ACGT	2 cut(s)	150, 527
HpyCH4V	TGCA	2 cut(s)	532, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 625
HpyF3I	CTNAG	2 cut(s)	84, 507
HpySE526I	ACGT	2 cut(s)	150, 527
Hsp92II	CATG	3 cut(s)	53, 589, 832
KroI	GCCGGC	1 cut(s)	624
KroNI	GCCGGC	1 cut(s)	626
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	220, 631, 649
LweI	GCATC	2 cut(s)	689, 849
MabI	ACCWGGT	1 cut(s)	728
MaeI	CTAG	2 cut(s)	686, 719
MaeII	ACGT	2 cut(s)	150, 527
MaeIII	GTNAC	3 cut(s)	71, 523, 789
MalI	GATC	3 cut(s)	222, 633, 651
MboI	GATC	3 cut(s)	220, 631, 649
MboII	GAAGA	4 cut(s)	19, 173, 346, 766
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	8 cut(s)	64, 170, 230, 401, 478, 488, 591, 746
MlyI	GAGTC	2 cut(s)	19, 241
MnlI	CCTC	7 cut(s)	88, 317, 340, 406, 514, 703, 706
Mph1103I	ATGCAT	1 cut(s)	864
MreI	CGCCGGCG	1 cut(s)	624
MroNI	GCCGGC	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	4 cut(s)	105, 374, 468, 614
MspI	CCGG	4 cut(s)	33, 101, 625, 700
MspR9I	CCNGG	2 cut(s)	60, 730
MvaI	CCWGG	2 cut(s)	60, 730
MwoI	GCNNNNNNNGC	2 cut(s)	443, 625
NaeI	GCCGGC	1 cut(s)	626
NdeII	GATC	3 cut(s)	220, 631, 649
NgoMIV	GCCGGC	1 cut(s)	624
NlaIII	CATG	3 cut(s)	53, 589, 832
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	71, 523
NsiI	ATGCAT	1 cut(s)	864
PagI	TCATGA	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	4 cut(s)	206, 341, 757, 797
PfoI	TCCNGGA	1 cut(s)	58
PleI	GAGTC	2 cut(s)	19, 241
PpsI	GAGTC	2 cut(s)	19, 241
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	58, 728
PspEI	GGTNACC	2 cut(s)	71, 789
PspGI	CCWGG	2 cut(s)	58, 728
PspN4I	GGNNCC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	105, 374, 468, 614
Sau3AI	GATC	3 cut(s)	220, 631, 649
SchI	GAGTC	2 cut(s)	19, 241
ScrFI	CCNGG	2 cut(s)	60, 730
SduI	GDGCHC	1 cut(s)	285
SexAI	ACCWGGT	1 cut(s)	728
SfaNI	GCATC	2 cut(s)	689, 849
SgrAI	CRCCGGYG	1 cut(s)	624
SmlI	CTYRAG	3 cut(s)	553, 635, 653
SmoI	CTYRAG	3 cut(s)	553, 635, 653
Sse9I	AATT	8 cut(s)	64, 170, 230, 401, 478, 488, 591, 746
SsiI	CCGC	2 cut(s)	437, 622
SspI	AATATT	2 cut(s)	80, 466
SspMI	CTAG	2 cut(s)	686, 719
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	58, 728
TaiI	ACGT	2 cut(s)	153, 530
TaqI	TCGA	2 cut(s)	141, 784
TasI	AATT	8 cut(s)	64, 170, 230, 401, 478, 488, 591, 746
TfiI	GAWTC	4 cut(s)	206, 341, 757, 797
Tru1I	TTAA	4 cut(s)	105, 374, 468, 614
Tru9I	TTAA	4 cut(s)	105, 374, 468, 614
TseFI	GTSAC	2 cut(s)	71, 523
Tsp45I	GTSAC	2 cut(s)	71, 523
TspDTI	ATGAA	6 cut(s)	66, 228, 347, 602, 845, 878
TspGWI	ACGGA	1 cut(s)	142
XapI	RAATTY	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	686, 719
Zsp2I	ATGCAT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.