FvH4_4g23680

Polysaccharide biosynthesis

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
26097993 .. 26099336
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23680.t1

Sequence Viewer

Length: 828 bp
ATGATCGACATGAAGACTCGCACAAACCTAAAGAGCTTGTTGGCCGCCGTTTTGGTGTTCTTCCTCGGCGCCGCCTTGTTCATCTCCAGCCTCACCGGAACAGGACCCTCCTTCCTCTGCTCTCTCCCTAATCTCATTGACGATTATCACCCCACGGCAACACAGCTCCAGGCGGTGCTCCACTACGCCACTTCATCTAAGACCCCGCAACAATCGCGTGCCGAGATCAGCGTCTCCTTCGACGTCCTTAAATCCCGGGCGCCCTGCAACTTCCTCGTCTTCGGTCTCGGCTACGACTCGCTCATGTGGGCATCGTTCAACCCACGTGGCACGACATTGTTCCTTGAGGAGGACCCAAAGTGGGTCCAGACCGTCCTCAAGGCTTCACCGGAGCTAAGGGCCGAGACCGTTAACTACCGTACGCAGCTGAAGCAGGCGGACGAGCTGCTCTCATCGTACAAATCCGAAGCGACGTGCGCGCCGTCTGAGGCGGTCTTACGTGGCAACGAGCGGTGCAAGCTGGCGCTGAGCAACCTGCCGGAGGAGGTGTACGAGAAGGAGTGGGACTTGATCATGATCGACGCGCCAAGGGGTTACTTTCCCGAGGCGCCTGGTCGGATGGCGGCGATATTCTCGGCGGCGGTGATGGCTAGAAGGCGGAGGGGGTCAGGTGCGACGCACGTGTTCTTGCACGATGTGGACCGGAAGGTGGAGAAGGCTTTTGCCGAGGAGTTTCTCTGCCGGAACTTCCTTGTTAAGGCCGTCGGGAGGCTCTGGCATTTTGAGATTCCCTCCGCTGTTAACGCCACCGACGTAAGTTTCTGCTGA

Protein Analysis

276

Amino Acids

30.66

Weight (kDa)

6.96

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 74 - 261 8.5e-84 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 543
AccB1I GGYRCC 3 cut(s) 68, 259, 607
AccBSI CCGCTC 1 cut(s) 511
AccII CGCG 3 cut(s) 217, 479, 584
AcoI YGGCCR 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 449
AcvI CACGTG 2 cut(s) 326, 682
AcyI GRCGYC 4 cut(s) 69, 243, 260, 608
AdeI CACNNNGTG 1 cut(s) 697
AfaI GTAC 3 cut(s) 421, 458, 551
AfiI CCNNNNNNNGG 6 cut(s) 349, 361, 541, 709, 757, 768
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 1 cut(s) 319
AjiI CACGTC 1 cut(s) 474
AjnI CCWGG 2 cut(s) 168, 610
AluBI AGCT 6 cut(s) 36, 166, 394, 427, 445, 520
AluI AGCT 6 cut(s) 36, 166, 394, 427, 445, 520
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 238, 290, 398
Ama87I CYCGRG 2 cut(s) 255, 602
AoxI GGCC 3 cut(s) 42, 399, 759
ApeKI GCWGC 2 cut(s) 424, 445
AspLEI GCGC 7 cut(s) 71, 262, 479, 481, 526, 586, 610
AspS9I GGNCC 5 cut(s) 104, 352, 364, 399, 700
AsuC2I CCSGG 2 cut(s) 256, 257
AsuHPI GGTGA 4 cut(s) 85, 140, 378, 655
AvaI CYCGRG 2 cut(s) 255, 602
AvaII GGWCC 4 cut(s) 104, 352, 364, 700
BanI GGYRCC 3 cut(s) 68, 259, 607
BbrPI CACGTG 2 cut(s) 326, 682
BbsI GAAGAC 2 cut(s) 20, 271
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 432, 436
BccI CCATC 2 cut(s) 613, 640
BceAI ACGGC 4 cut(s) 32, 171, 466, 746
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 2 cut(s) 170, 612
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 2 cut(s) 256, 257
BcoDI GTCTC 3 cut(s) 238, 290, 398
BfaI CTAG 1 cut(s) 651
BfoI RGCGCY 4 cut(s) 72, 263, 527, 611
BfuAI ACCTGC 1 cut(s) 543
BisI GCNGC 6 cut(s) 45, 72, 425, 446, 624, 639
BlpI GCTNAGC 1 cut(s) 527
BlsI GCNGC 6 cut(s) 46, 73, 426, 447, 625, 640
Bme1390I CCNGG 4 cut(s) 170, 256, 257, 612
Bme18I GGWCC 4 cut(s) 104, 352, 364, 700
BmeT110I CYCGRG 2 cut(s) 255, 602
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 5 cut(s) 104, 352, 364, 399, 700
BmiI GGNNCC 6 cut(s) 70, 106, 261, 354, 365, 609
BmrFI CCNGG 4 cut(s) 170, 256, 257, 612
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 2 cut(s) 20, 271
BplI GAGNNNNNCTC 4 cut(s) 434, 466, 776, 808
BpmI CTGGAG 2 cut(s) 70, 152
Bpu10I CCTNAGC 1 cut(s) 395
Bpu1102I GCTNAGC 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 362, 365
BpuMI CCSGG 2 cut(s) 256, 257
BsaAI YACGTR 3 cut(s) 326, 500, 682
BsaBI GATNNNNATC 1 cut(s) 575
BsaHI GRCGYC 4 cut(s) 69, 243, 260, 608
BsaI GGTCTC 2 cut(s) 290, 398
BsaJI CCNNGG 6 cut(s) 64, 153, 255, 587, 603, 726
BsaWI WCCGGW 3 cut(s) 95, 388, 702
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 6 cut(s) 349, 361, 541, 709, 757, 768
Bse8I GATNNNNATC 1 cut(s) 575
BseBI CCWGG 2 cut(s) 170, 612
BseDI CCNNGG 6 cut(s) 64, 153, 255, 587, 603, 726
BseGI GGATG 1 cut(s) 624
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 6 cut(s) 349, 361, 541, 709, 757, 768
BseMII CTCAG 2 cut(s) 477, 518
BsePI GCGCGC 1 cut(s) 477
BseRI GAGGAG 3 cut(s) 362, 557, 743
BseXI GCAGC 2 cut(s) 432, 436
Bsh1236I CGCG 3 cut(s) 217, 479, 584
BshFI GGCC 3 cut(s) 44, 401, 761
BshNI GGYRCC 3 cut(s) 68, 259, 607
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 2 cut(s) 255, 602
BsiSI CCGG 6 cut(s) 96, 256, 389, 539, 703, 742
BsiWI CGTACG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 6 cut(s) 349, 361, 541, 709, 757, 768
BsmAI GTCTC 3 cut(s) 238, 290, 398
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 578
BsnI GGCC 3 cut(s) 44, 401, 761
Bso31I GGTCTC 2 cut(s) 290, 398
BsoBI CYCGRG 2 cut(s) 255, 602
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 4 cut(s) 3, 225, 570, 576
Bsp1720I GCTNAGC 1 cut(s) 527
BspANI GGCC 3 cut(s) 44, 401, 761
BspCNI CTCAG 2 cut(s) 478, 519
BspFNI CGCG 3 cut(s) 217, 479, 584
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 6 cut(s) 70, 106, 261, 354, 365, 609
BspMI ACCTGC 1 cut(s) 543
BspT107I GGYRCC 3 cut(s) 68, 259, 607
BspTNI GGTCTC 2 cut(s) 290, 398
BsrBI CCGCTC 1 cut(s) 511
BssECI CCNNGG 6 cut(s) 64, 153, 255, 587, 603, 726
BssHII GCGCGC 1 cut(s) 477
BssMI GATC 4 cut(s) 3, 225, 570, 576
BssNI GRCGYC 4 cut(s) 69, 243, 260, 608
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 2 cut(s) 170, 612
Bst4CI ACNGT 3 cut(s) 373, 409, 419
BstACI GRCGYC 4 cut(s) 69, 243, 260, 608
BstBAI YACGTR 3 cut(s) 326, 500, 682
BstC8I GCNNGC 5 cut(s) 219, 435, 479, 518, 522
BstDEI CTNAG 4 cut(s) 198, 395, 486, 527
BstDSI CCRYGG 1 cut(s) 153
BstENI CCTNNNNNAGG 3 cut(s) 347, 539, 755
BstF5I GGATG 1 cut(s) 624
BstFNI CGCG 3 cut(s) 217, 479, 584
BstH2I RGCGCY 4 cut(s) 72, 263, 527, 611
BstHHI GCGC 7 cut(s) 71, 262, 479, 481, 526, 586, 610
BstKTI GATC 4 cut(s) 6, 228, 573, 579
BstMAI GTCTC 3 cut(s) 238, 290, 398
BstMBI GATC 4 cut(s) 3, 225, 570, 576
BstMWI GCNNNNNNNGC 6 cut(s) 214, 430, 476, 517, 647, 803
BstNI CCWGG 2 cut(s) 170, 612
BstSCI CCNGG 4 cut(s) 168, 254, 255, 610
BstUI CGCG 3 cut(s) 217, 479, 584
BstV1I GCAGC 2 cut(s) 432, 436
BstV2I GAAGAC 2 cut(s) 20, 271
BsuRI GGCC 3 cut(s) 44, 401, 761
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 1 cut(s) 624
BveI ACCTGC 1 cut(s) 543
Cac8I GCNNGC 5 cut(s) 219, 435, 479, 518, 522
CciI TCATGA 1 cut(s) 573
CfoI GCGC 7 cut(s) 71, 262, 479, 481, 526, 586, 610
Cfr13I GGNCC 5 cut(s) 104, 352, 364, 399, 700
Cfr9I CCCGGG 1 cut(s) 255
CseI GACGC 3 cut(s) 220, 590, 685
Csp6I GTAC 3 cut(s) 420, 457, 550
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 3 cut(s) 10, 304, 574
CviQI GTAC 3 cut(s) 420, 457, 550
DdeI CTNAG 4 cut(s) 198, 395, 486, 527
DinI GGCGCC 3 cut(s) 70, 261, 609
DpnI GATC 4 cut(s) 5, 227, 572, 578
DpnII GATC 4 cut(s) 3, 225, 570, 576
DraIII CACNNNGTG 1 cut(s) 697
EaeI YGGCCR 1 cut(s) 42
EciI GGCGGA 2 cut(s) 452, 673
Eco130I CCWWGG 1 cut(s) 587
Eco31I GGTCTC 2 cut(s) 290, 398
Eco47I GGWCC 4 cut(s) 104, 352, 364, 700
Eco57I CTGAAG 1 cut(s) 449
Eco72I CACGTG 2 cut(s) 326, 682
Eco88I CYCGRG 2 cut(s) 255, 602
EcoNI CCTNNNNNAGG 3 cut(s) 347, 539, 755
EcoO109I RGGNCCY 2 cut(s) 104, 352
EcoRII CCWGG 2 cut(s) 168, 610
EcoT14I CCWWGG 1 cut(s) 587
EgeI GGCGCC 3 cut(s) 70, 261, 609
EheI GGCGCC 3 cut(s) 70, 261, 609
ErhI CCWWGG 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 3 cut(s) 13, 307, 577
FaiI YATR 3 cut(s) 11, 305, 575
FaqI GGGAC 1 cut(s) 578
FatI CATG 3 cut(s) 9, 303, 573
FauI CCCGC 1 cut(s) 213
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 6 cut(s) 45, 72, 425, 446, 624, 639
FokI GGATG 1 cut(s) 631
Fsp4HI GCNGC 6 cut(s) 45, 72, 425, 446, 624, 639
FspBI CTAG 1 cut(s) 651
GlaI GCGC 7 cut(s) 70, 261, 478, 480, 525, 585, 609
GluI GCNGC 6 cut(s) 45, 72, 425, 446, 624, 639
GsuI CTGGAG 2 cut(s) 70, 152
HaeII RGCGCY 4 cut(s) 72, 263, 527, 611
HaeIII GGCC 3 cut(s) 44, 401, 761
HapII CCGG 6 cut(s) 96, 256, 389, 539, 703, 742
HgaI GACGC 3 cut(s) 220, 590, 685
HhaI GCGC 7 cut(s) 71, 262, 479, 481, 526, 586, 610
Hin1I GRCGYC 4 cut(s) 69, 243, 260, 608
Hin1II CATG 3 cut(s) 13, 307, 577
Hin6I GCGC 7 cut(s) 69, 260, 477, 479, 524, 584, 608
HinP1I GCGC 7 cut(s) 69, 260, 477, 479, 524, 584, 608
HincII GTYRAC 2 cut(s) 412, 802
HindII GTYRAC 2 cut(s) 412, 802
HinfI GANTC 3 cut(s) 16, 296, 787
HpaI GTTAAC 2 cut(s) 412, 802
HpaII CCGG 6 cut(s) 96, 256, 389, 539, 703, 742
HphI GGTGA 4 cut(s) 85, 140, 378, 655
Hpy166II GTNNAC 4 cut(s) 412, 550, 700, 802
Hpy188I TCNGA 3 cut(s) 466, 487, 618
Hpy188III TCNNGA 4 cut(s) 367, 574, 602, 766
Hpy8I GTNNAC 4 cut(s) 412, 550, 700, 802
Hpy99I CGWCG 6 cut(s) 245, 475, 584, 679, 767, 815
HpyAV CCTTC 6 cut(s) 121, 247, 550, 648, 700, 709
HpyCH4III ACNGT 3 cut(s) 373, 409, 419
HpyCH4IV ACGT 6 cut(s) 243, 325, 473, 499, 681, 813
HpyCH4V TGCA 3 cut(s) 267, 516, 691
HpyF10VI GCNNNNNNNGC 6 cut(s) 214, 430, 476, 517, 647, 803
HpyF3I CTNAG 4 cut(s) 198, 395, 486, 527
HpySE526I ACGT 6 cut(s) 243, 325, 473, 499, 681, 813
Hsp92I GRCGYC 4 cut(s) 69, 243, 260, 608
Hsp92II CATG 3 cut(s) 13, 307, 577
HspAI GCGC 7 cut(s) 69, 260, 477, 479, 524, 584, 608
KasI GGCGCC 3 cut(s) 68, 259, 607
Ksp22I TGATCA 1 cut(s) 570
KspAI GTTAAC 2 cut(s) 412, 802
Kzo9I GATC 4 cut(s) 3, 225, 570, 576
LmnI GCTCC 3 cut(s) 171, 183, 391
Lsp1109I GCAGC 2 cut(s) 432, 436
LweI GCATC 1 cut(s) 320
MaeI CTAG 1 cut(s) 651
MaeII ACGT 6 cut(s) 243, 325, 473, 499, 681, 813
MaeIII GTNAC 1 cut(s) 593
MalI GATC 4 cut(s) 5, 227, 572, 578
MbiI CCGCTC 1 cut(s) 511
MboI GATC 4 cut(s) 3, 225, 570, 576
MboII GAAGA 3 cut(s) 25, 52, 271
MhlI GDGCHC 1 cut(s) 180
Mly113I GGCGCC 3 cut(s) 69, 260, 608
MlyI GAGTC 2 cut(s) 10, 290
MmeI TCCRAC 1 cut(s) 596
MseI TTAA 4 cut(s) 249, 411, 756, 801
MspA1I CMGCKG 2 cut(s) 427, 797
MspI CCGG 6 cut(s) 96, 256, 389, 539, 703, 742
MspR9I CCNGG 4 cut(s) 170, 256, 257, 612
MvaI CCWGG 2 cut(s) 170, 612
MvnI CGCG 3 cut(s) 217, 479, 584
MwoI GCNNNNNNNGC 6 cut(s) 214, 430, 476, 517, 647, 803
NarI GGCGCC 3 cut(s) 69, 260, 608
NciI CCSGG 2 cut(s) 256, 257
NdeII GATC 4 cut(s) 3, 225, 570, 576
NlaIII CATG 3 cut(s) 13, 307, 577
NlaIV GGNNCC 6 cut(s) 70, 106, 261, 354, 365, 609
NmeAIII GCCGAG 6 cut(s) 45, 247, 267, 427, 614, 751
PagI TCATGA 1 cut(s) 573
PauI GCGCGC 1 cut(s) 477
PcsI WCGNNNNNNNCGW 2 cut(s) 479, 810
PfeI GAWTC 1 cut(s) 787
Pfl23II CGTACG 1 cut(s) 419
PkrI GCNGC 6 cut(s) 46, 73, 426, 447, 625, 640
PleI GAGTC 2 cut(s) 10, 290
PluTI GGCGCC 3 cut(s) 72, 263, 611
PmaCI CACGTG 2 cut(s) 326, 682
PmlI CACGTG 2 cut(s) 326, 682
PpsI GAGTC 2 cut(s) 10, 290
Ppu21I YACGTR 3 cut(s) 326, 500, 682
PpuMI RGGWCCY 2 cut(s) 104, 352
Psp5II RGGWCCY 2 cut(s) 104, 352
Psp6I CCWGG 2 cut(s) 168, 610
PspCI CACGTG 2 cut(s) 326, 682
PspGI CCWGG 2 cut(s) 168, 610
PspLI CGTACG 1 cut(s) 419
PspN4I GGNNCC 6 cut(s) 70, 106, 261, 354, 365, 609
PspPI GGNCC 5 cut(s) 104, 352, 364, 399, 700
PspPPI RGGWCCY 2 cut(s) 104, 352
PteI GCGCGC 1 cut(s) 477
PvuII CAGCTG 1 cut(s) 427
RsaI GTAC 3 cut(s) 421, 458, 551
RsaNI GTAC 3 cut(s) 420, 457, 550
SaqAI TTAA 4 cut(s) 249, 411, 756, 801
SatI GCNGC 6 cut(s) 45, 72, 425, 446, 624, 639
Sau3AI GATC 4 cut(s) 3, 225, 570, 576
Sau96I GGNCC 5 cut(s) 104, 352, 364, 399, 700
SchI GAGTC 2 cut(s) 10, 290
ScrFI CCNGG 4 cut(s) 170, 256, 257, 612
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 1 cut(s) 320
SfoI GGCGCC 3 cut(s) 70, 261, 609
SinI GGWCC 4 cut(s) 104, 352, 364, 700
SmaI CCCGGG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 344, 377
SmoI CTYRAG 2 cut(s) 344, 377
SspDI GGCGCC 3 cut(s) 68, 259, 607
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 4 cut(s) 168, 254, 255, 610
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 3 cut(s) 373, 409, 419
TaiI ACGT 6 cut(s) 246, 328, 476, 502, 684, 816
TaqI TCGA 3 cut(s) 6, 240, 579
TaqII GACCGA 1 cut(s) 272
TauI GCSGC 4 cut(s) 47, 74, 626, 641
TfiI GAWTC 1 cut(s) 787
Tru1I TTAA 4 cut(s) 249, 411, 756, 801
Tru9I TTAA 4 cut(s) 249, 411, 756, 801
TseI GCWGC 2 cut(s) 424, 445
TspDTI ATGAA 3 cut(s) 26, 70, 183
TspMI CCCGGG 1 cut(s) 255
VpaK11BI GGWCC 4 cut(s) 104, 352, 364, 700
XagI CCTNNNNNAGG 3 cut(s) 347, 539, 755
XmaI CCCGGG 1 cut(s) 255
XspI CTAG 1 cut(s) 651
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.