Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006003.1

Orthogroup ID

OG0005005

Physical Location & Seq

Genomic Coordinates Forward (+)

36708 .. 37538

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006003.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgaagcatcggagcactctaacatcggagaagacgggtctcctagctgcagttttggttttctttatcagtgctgctttgttcatctccagcctcaccgaaactggaaactcattcttttgctctttacccatttttggcaaggacgataatacccccacagcgattcaactacaggctattctccattacgccacatctcgaacaacaccgcagcagtccaaggatgagattagcgtctcctttgaggtcttgaaatcacgagcgccatgcaacttcctcgtatttggtctcggccacgactcgctgatgtgggcctcatttaacccacatggcacgacgttgttcctcgaggaggaccccaagtgggtcaagaatgtcttgaacaaggcgccgcagctgcgtgcggtacatgtgaactaccgcacgcagctcaagcaagcgaacgacctactattgtcgtacaaatctgaagcgacgtgtaggccgtccgagacattgctacgtggcaacacacagtgcaagttagcgctgagcaacctaccagatgaggtgtacgagagggagtgggacctgattatgatcgatgcgcctcggggttggtttgccgaggcgcctggtcgaatgggtgctatattctcagctgctgtcatggccaggaagaggcagggaccgggctcgacgcacgtgttcttgcatgacattgatcgaaaggtggagaaggcttttgcggaggagttcttgtgccgtaagtatcttgtgaacgccgtggggaggctgtggcattttgtgattccgtctgccgttgatgtcaccaacgctgacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

276

Amino Acids

30.92

Weight (kDa)

8.55

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27930 AT1G67330
fragaria_vesca	FvH4_3g25190 FvH4_4g23680 FvH4_4g23700
malus_domestica	MD13G1119900.v1.1 MD13G1120100.v1.1 MD16G1120000.v1.1
prunus_persica	Prupe.1G225200_v2.0.a1
pyrus_communis	pycom13g10440 pycom16g10250
rosa_chinensis	RchiOBHm_Chr4g0430171 RchiOBHm_Chr5g0046131
rosa_laevigata	RLG00000006999
rosa_multiflora	Rmu_sc0001035.1_g000058 Rmu_sc0004036.1_g000003 Rmu_sc0006003.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035410 Rroxscaffold_5G00371970
rosa_rugosa	Rorug04G0241000 Rorug05G0225300
rosa_samantha	Rh4BG304200 Rh4CG319700 Rh4DG301700 Rh5AG306400 Rh5BG314600 Rh5CG341100 Rh5DG324900
rosa_wichuraiana	Rw4G025820 Rw5G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	391, 613
AciI	CCGC	5 cut(s)	212, 395, 407, 424, 731
AcoI	YGGCCR	2 cut(s)	295, 654
AcuI	CTGAAG	1 cut(s)	492
AcvI	CACGTG	1 cut(s)	688
AcyI	GRCGYC	2 cut(s)	392, 614
AdeI	CACNNNGTG	1 cut(s)	519
AfaI	GTAC	3 cut(s)	411, 464, 557
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	5 cut(s)	137, 355, 367, 663, 774
AflIII	ACRYGT	3 cut(s)	412, 479, 687
AgsI	TTSAA	3 cut(s)	170, 256, 385
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	2 cut(s)	616, 656
AluBI	AGCT	4 cut(s)	47, 400, 433, 644
AluI	AGCT	4 cut(s)	47, 400, 433, 644
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	4 cut(s)	44, 244, 296, 488
AlwNI	CAGNNNCTG	1 cut(s)	647
Ama87I	CYCGRG	2 cut(s)	350, 594
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	4 cut(s)	295, 315, 485, 654
ApeKI	GCWGC	7 cut(s)	47, 74, 214, 397, 400, 430, 644
AspLEI	GCGC	5 cut(s)	268, 394, 532, 592, 616
AspS9I	GGNCC	4 cut(s)	315, 358, 571, 671
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	2 cut(s)	88, 805
AvaI	CYCGRG	2 cut(s)	350, 594
AvaII	GGWCC	3 cut(s)	358, 571, 671
BalI	TGGCCA	1 cut(s)	656
BanI	GGYRCC	2 cut(s)	391, 613
BanII	GRGCYC	1 cut(s)	680
BauI	CACGAG	1 cut(s)	261
BbrPI	CACGTG	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	7 cut(s)	34, 61, 226, 387, 409, 442, 631
BceAI	ACGGC	4 cut(s)	472, 732, 752, 788
BcgI	CGANNNNNNTGC	4 cut(s)	252, 262, 286, 296
BciT130I	CCWGG	2 cut(s)	618, 658
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	4 cut(s)	44, 244, 296, 488
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	2 cut(s)	48, 173
BfoI	RGCGCY	4 cut(s)	269, 395, 533, 617
BisI	GCNGC	8 cut(s)	48, 75, 215, 395, 398, 401, 431, 645
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	8 cut(s)	49, 76, 216, 396, 399, 402, 432, 646
Bme1390I	CCNGG	3 cut(s)	618, 658, 675
Bme18I	GGWCC	3 cut(s)	358, 571, 671
BmeT110I	CYCGRG	2 cut(s)	350, 594
BmgBI	CACGTC	1 cut(s)	480
BmgT120I	GGNCC	4 cut(s)	315, 358, 571, 671
BmiI	GGNNCC	5 cut(s)	360, 393, 572, 615, 672
BmrFI	CCNGG	3 cut(s)	618, 658, 675
BmsI	GCATC	2 cut(s)	16, 577
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	675
Bsa29I	ATCGAT	1 cut(s)	585
BsaAI	YACGTR	2 cut(s)	506, 688
BsaBI	GATNNNNATC	1 cut(s)	581
BsaHI	GRCGYC	2 cut(s)	392, 614
BsaI	GGTCTC	2 cut(s)	44, 296
BsaJI	CCNNGG	4 cut(s)	222, 593, 609, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	728, 758
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 355, 367, 663, 774
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	497
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	618, 658
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	222, 593, 609, 768
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	5 cut(s)	137, 355, 367, 663, 774
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	524, 654
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	368, 749
BseXI	GCAGC	7 cut(s)	34, 61, 226, 387, 409, 442, 631
BshFI	GGCC	4 cut(s)	297, 317, 487, 656
BshNI	GGYRCC	2 cut(s)	391, 613
BshVI	ATCGAT	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	2 cut(s)	350, 594
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	2 cut(s)	584, 684
BslI	CCNNNNNNNGG	5 cut(s)	137, 355, 367, 663, 774
BsmAI	GTCTC	4 cut(s)	44, 244, 296, 488
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	584, 684
BsnI	GGCC	4 cut(s)	297, 317, 487, 656
Bso31I	GGTCTC	2 cut(s)	44, 296
BsoBI	CYCGRG	2 cut(s)	350, 594
Bsp1286I	GDGCHC	2 cut(s)	17, 680
Bsp143I	GATC	2 cut(s)	582, 706
Bsp1720I	GCTNAGC	1 cut(s)	533
BspACI	CCGC	5 cut(s)	212, 395, 407, 424, 731
BspANI	GGCC	4 cut(s)	297, 317, 487, 656
BspCNI	CTCAG	2 cut(s)	525, 653
BspDI	ATCGAT	1 cut(s)	585
BspLI	GGNNCC	5 cut(s)	360, 393, 572, 615, 672
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	391, 613
BspTNI	GGTCTC	2 cut(s)	44, 296
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	4 cut(s)	222, 593, 609, 768
BssMI	GATC	2 cut(s)	582, 706
BssNI	GRCGYC	2 cut(s)	392, 614
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	618, 658
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	656
BstACI	GRCGYC	2 cut(s)	392, 614
BstBAI	YACGTR	2 cut(s)	506, 688
BstC8I	GCNNGC	3 cut(s)	405, 428, 441
BstDEI	CTNAG	2 cut(s)	533, 640
BstDSI	CCRYGG	1 cut(s)	768
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	4 cut(s)	269, 395, 533, 617
BstHHI	GCGC	5 cut(s)	268, 394, 532, 592, 616
BstKTI	GATC	2 cut(s)	585, 709
BstMAI	GTCTC	4 cut(s)	44, 244, 296, 488
BstMBI	GATC	2 cut(s)	582, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	400, 436, 653
BstNI	CCWGG	2 cut(s)	618, 658
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	3 cut(s)	616, 656, 673
BstSFI	CTRYAG	2 cut(s)	48, 173
BstV1I	GCAGC	7 cut(s)	34, 61, 226, 387, 409, 442, 631
BstV2I	GAAGAC	1 cut(s)	38
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	4 cut(s)	297, 317, 487, 656
BsuTUI	ATCGAT	1 cut(s)	585
BtgI	CCRYGG	1 cut(s)	768
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	76, 524
Cac8I	GCNNGC	3 cut(s)	405, 428, 441
CaiI	CAGNNNCTG	1 cut(s)	647
CfoI	GCGC	5 cut(s)	268, 394, 532, 592, 616
Cfr13I	GGNCC	4 cut(s)	315, 358, 571, 671
ClaI	ATCGAT	1 cut(s)	585
CseI	GACGC	2 cut(s)	226, 691
Csp6I	GTAC	3 cut(s)	410, 463, 556
CviAII	CATG	5 cut(s)	270, 332, 413, 652, 698
CviQI	GTAC	3 cut(s)	410, 463, 556
DdeI	CTNAG	2 cut(s)	533, 640
DinI	GGCGCC	2 cut(s)	393, 615
DpnI	GATC	2 cut(s)	584, 708
DpnII	GATC	2 cut(s)	582, 706
DraIII	CACNNNGTG	1 cut(s)	519
EaeI	YGGCCR	2 cut(s)	295, 654
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	680
Eco31I	GGTCTC	2 cut(s)	44, 296
Eco47I	GGWCC	3 cut(s)	358, 571, 671
Eco47III	AGCGCT	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	492
Eco72I	CACGTG	1 cut(s)	688
Eco88I	CYCGRG	2 cut(s)	350, 594
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	358, 571
EcoRII	CCWGG	2 cut(s)	616, 656
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	680
EgeI	GGCGCC	2 cut(s)	393, 615
EheI	GGCGCC	2 cut(s)	393, 615
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	5 cut(s)	273, 335, 416, 655, 701
FaiI	YATR	7 cut(s)	271, 333, 414, 581, 635, 653, 699
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	584, 684
FatI	CATG	5 cut(s)	269, 331, 412, 651, 697
Fnu4HI	GCNGC	8 cut(s)	48, 75, 215, 395, 398, 401, 431, 645
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	8 cut(s)	48, 75, 215, 395, 398, 401, 431, 645
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	5 cut(s)	267, 393, 531, 591, 615
GluI	GCNGC	8 cut(s)	48, 75, 215, 395, 398, 401, 431, 645
GsuI	CTGGAG	1 cut(s)	73
HaeII	RGCGCY	4 cut(s)	269, 395, 533, 617
HaeIII	GGCC	4 cut(s)	297, 317, 487, 656
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	2 cut(s)	226, 691
HhaI	GCGC	5 cut(s)	268, 394, 532, 592, 616
Hin1I	GRCGYC	2 cut(s)	392, 614
Hin1II	CATG	5 cut(s)	273, 335, 416, 655, 701
Hin6I	GCGC	5 cut(s)	266, 392, 530, 590, 614
HinP1I	GCGC	5 cut(s)	266, 392, 530, 590, 614
HinfI	GANTC	3 cut(s)	166, 302, 793
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	2 cut(s)	88, 805
Hpy166II	GTNNAC	3 cut(s)	418, 556, 763
Hpy188I	TCNGA	4 cut(s)	12, 28, 472, 493
Hpy188III	TCNNGA	5 cut(s)	201, 253, 261, 373, 382
Hpy8I	GTNNAC	3 cut(s)	418, 556, 763
Hpy99I	CGWCG	3 cut(s)	343, 481, 685
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	4 cut(s)	341, 479, 505, 687
HpyCH4V	TGCA	4 cut(s)	50, 273, 522, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	400, 436, 653
HpyF3I	CTNAG	2 cut(s)	533, 640
HpySE526I	ACGT	4 cut(s)	341, 479, 505, 687
Hsp92I	GRCGYC	2 cut(s)	392, 614
Hsp92II	CATG	5 cut(s)	273, 335, 416, 655, 701
HspAI	GCGC	5 cut(s)	266, 392, 530, 590, 614
KasI	GGCGCC	2 cut(s)	391, 613
Kzo9I	GATC	2 cut(s)	582, 706
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	7 cut(s)	34, 61, 226, 387, 409, 442, 631
LweI	GCATC	2 cut(s)	16, 577
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	4 cut(s)	341, 479, 505, 687
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	2 cut(s)	584, 708
MboI	GATC	2 cut(s)	582, 706
MboII	GAAGA	2 cut(s)	43, 673
MhlI	GDGCHC	2 cut(s)	17, 680
MlsI	TGGCCA	1 cut(s)	656
MluNI	TGGCCA	1 cut(s)	656
Mly113I	GGCGCC	2 cut(s)	392, 614
MlyI	GAGTC	1 cut(s)	296
Mox20I	TGGCCA	1 cut(s)	656
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	656
MspA1I	CMGCKG	2 cut(s)	400, 644
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	3 cut(s)	618, 658, 675
MvaI	CCWGG	2 cut(s)	618, 658
MwoI	GCNNNNNNNGC	3 cut(s)	400, 436, 653
NarI	GGCGCC	2 cut(s)	392, 614
NciI	CCSGG	1 cut(s)	675
NdeII	GATC	2 cut(s)	582, 706
NlaIII	CATG	5 cut(s)	273, 335, 416, 655, 701
NlaIV	GGNNCC	5 cut(s)	360, 393, 572, 615, 672
NmeAIII	GCCGAG	2 cut(s)	273, 634
NmuCI	GTSAC	1 cut(s)	811
NspI	RCATGY	1 cut(s)	416
PaeR7I	CTCGAG	1 cut(s)	350
PciI	ACATGT	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	166, 793
PkrI	GCNGC	8 cut(s)	49, 76, 216, 396, 399, 402, 432, 646
PleI	GAGTC	1 cut(s)	296
PluTI	GGCGCC	2 cut(s)	395, 617
PmaCI	CACGTG	1 cut(s)	688
PmlI	CACGTG	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	296
Ppu21I	YACGTR	2 cut(s)	506, 688
PpuMI	RGGWCCY	2 cut(s)	358, 571
PscI	ACATGT	1 cut(s)	412
Psp5II	RGGWCCY	2 cut(s)	358, 571
Psp6I	CCWGG	2 cut(s)	616, 656
PspCI	CACGTG	1 cut(s)	688
PspGI	CCWGG	2 cut(s)	616, 656
PspN4I	GGNNCC	5 cut(s)	360, 393, 572, 615, 672
PspPI	GGNCC	4 cut(s)	315, 358, 571, 671
PspPPI	RGGWCCY	2 cut(s)	358, 571
PspXI	VCTCGAGB	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	647
PvuII	CAGCTG	2 cut(s)	400, 644
RsaI	GTAC	3 cut(s)	411, 464, 557
RsaNI	GTAC	3 cut(s)	410, 463, 556
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	8 cut(s)	48, 75, 215, 395, 398, 401, 431, 645
Sau3AI	GATC	2 cut(s)	582, 706
Sau96I	GGNCC	4 cut(s)	315, 358, 571, 671
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	3 cut(s)	618, 658, 675
SduI	GDGCHC	2 cut(s)	17, 680
SfaNI	GCATC	2 cut(s)	16, 577
SfcI	CTRYAG	2 cut(s)	48, 173
SfoI	GGCGCC	2 cut(s)	393, 615
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	358, 571, 671
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	350, 434
SmoI	CTYRAG	2 cut(s)	350, 434
SsiI	CCGC	5 cut(s)	212, 395, 407, 424, 731
SspDI	GGCGCC	2 cut(s)	391, 613
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	616, 656, 673
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	4 cut(s)	344, 482, 508, 690
TaqI	TCGA	6 cut(s)	202, 351, 585, 622, 680, 709
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	166, 793
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	76, 524
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	7 cut(s)	47, 74, 214, 397, 400, 430, 644
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	2 cut(s)	17, 73
TspGWI	ACGGA	1 cut(s)	786
TspRI	CASTG	2 cut(s)	76, 524
VpaK11BI	GGWCC	3 cut(s)	358, 571, 671
XagI	CCTNNNNNAGG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	350
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.