Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005005

Physical Location & Seq

Genomic Coordinates Forward (+)

23880676 .. 23882092

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAGGTTCGCAGTTCTTTGTCGGAGAGGCCCGGGTTCCTCGCCGTCGTTTTGCTTATCCTCATCGGCGTCGGGCTCTTCATCTCGAGTTTCAGCCGCGTTGGGACCTCCATGCTTTGCTCGCTGGCGGGACCCACATTTCTCCTCGCCGTAGACGAGAACTACTCGCCTACGGGGATCCAGCTCCAAGCCATTCTCCACTACGCCACGTCGCGCCAGACCCCGCAGCAATCGCGCGGCGAGATCGGCGTCTCCTTCGAGGTCCTCAAGGCTCGCGCGCCGTGCAACTTCCTCGTGTTCGGTCTCGGCTTCGACTCGCAAATGTGGGCGTCGTTCAATCCACGTGGCACGACGCTGTTCCTCGAGGAGGACCCCAAGTGGGTCCAGACCGTCCTCAAGGACGCGCCGCATCTCCGGGCGCAGACGGTGCGCTACCGCACGCACCTCAAGGAAGCGGACGATCTCCTCTCCTCGTACAGATCCGAACCGTCGTGTTCTCCGTCCGAGGCGGTCCTGCGTGGCAACGCGCAGTGCAGGCTGGCGCTGAACAACCTGCCGGACGAGGTGTACGAGAGGGAGTGGGACCTGATCATGATCGACGCGCCGCGCGGGTATTTCCCCGAGGCGCCGGGGCGGATGGCTGCTATATTCTCGGCAGCTGTGATGGCGAGGAGAAGGCAGGGATCTGGTGTGACGCACGTGTTCTTGCACGATGTGAATCGGAGGGTGGAGAAGGTGTATGCGGAGGAGTTCCTGTGCAGGAAGTACTTGGTTAAGGCCGTGGGGAGGCTCTGGCACTTTGAGATTCCCTCCGCCGCGAACGCGACGGAAGTTGACGGCGCACGCTTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

285

Amino Acids

31.75

Weight (kDa)

8.53

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27930 AT1G67330
fragaria_vesca	FvH4_3g25190 FvH4_4g23680 FvH4_4g23700
malus_domestica	MD13G1119900.v1.1 MD13G1120100.v1.1 MD16G1120000.v1.1
prunus_persica	Prupe.1G225200_v2.0.a1
pyrus_communis	pycom13g10440 pycom16g10250
rosa_chinensis	RchiOBHm_Chr4g0430171 RchiOBHm_Chr5g0046131
rosa_laevigata	RLG00000006999
rosa_multiflora	Rmu_sc0001035.1_g000058 Rmu_sc0004036.1_g000003 Rmu_sc0006003.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035410 Rroxscaffold_5G00371970
rosa_rugosa	Rorug04G0241000 Rorug05G0225300
rosa_samantha	Rh4BG304200 Rh4CG319700 Rh4DG301700 Rh5AG306400 Rh5BG314600 Rh5CG341100 Rh5DG324900
rosa_wichuraiana	Rw4G025820 Rw5G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	153
AclWI	GGATC	4 cut(s)	172, 185, 474, 691
AcvI	CACGTG	2 cut(s)	344, 700
AcyI	GRCGYC	4 cut(s)	69, 249, 329, 626
AdeI	CACNNNGTG	1 cut(s)	715
AfaI	GTAC	3 cut(s)	476, 569, 767
AfiI	CCNNNNNNNGG	3 cut(s)	367, 379, 786
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	210
AluBI	AGCT	2 cut(s)	184, 659
AluI	AGCT	2 cut(s)	184, 659
Alw26I	GTCTC	2 cut(s)	256, 308
AlwI	GGATC	4 cut(s)	172, 185, 474, 691
Ama87I	CYCGRG	4 cut(s)	32, 85, 362, 620
AoxI	GGCC	2 cut(s)	29, 777
ApeKI	GCWGC	3 cut(s)	226, 641, 656
AspS9I	GGNCC	8 cut(s)	30, 105, 131, 262, 370, 382, 511, 583
AsuC2I	CCSGG	4 cut(s)	33, 34, 416, 630
AvaI	CYCGRG	4 cut(s)	32, 85, 362, 620
AvaII	GGWCC	7 cut(s)	105, 131, 262, 370, 382, 511, 583
BamHI	GGATCC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	293
BbrPI	CACGTG	2 cut(s)	344, 700
BbvI	GCAGC	3 cut(s)	238, 628, 668
BccI	CCATC	2 cut(s)	631, 658
BceAI	ACGGC	5 cut(s)	29, 134, 265, 764, 853
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BclI	TGATCA	1 cut(s)	588
BcnI	CCSGG	4 cut(s)	33, 34, 416, 630
BcoDI	GTCTC	2 cut(s)	256, 308
BfoI	RGCGCY	2 cut(s)	545, 629
BfuAI	ACCTGC	1 cut(s)	561
BisI	GCNGC	8 cut(s)	97, 227, 238, 407, 605, 642, 657, 816
BlsI	GCNGC	8 cut(s)	98, 228, 239, 408, 606, 643, 658, 817
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	4 cut(s)	33, 34, 416, 630
Bme18I	GGWCC	7 cut(s)	105, 131, 262, 370, 382, 511, 583
BmeT110I	CYCGRG	4 cut(s)	32, 85, 362, 620
BmgBI	CACGTC	1 cut(s)	210
BmgT120I	GGNCC	8 cut(s)	30, 105, 131, 262, 370, 382, 511, 583
BmiI	GGNNCC	9 cut(s)	38, 106, 132, 133, 179, 372, 383, 584, 627
BmrFI	CCNGG	4 cut(s)	33, 34, 416, 630
BmsI	GCATC	1 cut(s)	418
BplI	GAGNNNNNCTC	4 cut(s)	149, 181, 794, 826
BpuEI	CTTGAG	3 cut(s)	251, 380, 431
BpuMI	CCSGG	4 cut(s)	33, 34, 416, 630
BsaAI	YACGTR	2 cut(s)	344, 700
BsaBI	GATNNNNATC	2 cut(s)	593, 717
BsaHI	GRCGYC	4 cut(s)	69, 249, 329, 626
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	5 cut(s)	32, 504, 621, 629, 780
BsaXI	ACNNNNNCTCC	4 cut(s)	722, 740, 752, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 379, 786
Bse8I	GATNNNNATC	2 cut(s)	593, 717
BseDI	CCNNGG	5 cut(s)	32, 504, 621, 629, 780
BseGI	GGATG	1 cut(s)	642
BseJI	GATNNNNATC	2 cut(s)	593, 717
BseLI	CCNNNNNNNGG	3 cut(s)	367, 379, 786
BsePI	GCGCGC	1 cut(s)	276
BseRI	GAGGAG	6 cut(s)	134, 380, 455, 460, 685, 761
BseXI	GCAGC	3 cut(s)	238, 628, 668
BsgI	GTGCAG	2 cut(s)	553, 778
BshFI	GGCC	2 cut(s)	31, 779
BshNI	GGYRCC	1 cut(s)	625
BsiHKCI	CYCGRG	4 cut(s)	32, 85, 362, 620
BsiSI	CCGG	4 cut(s)	33, 415, 557, 629
BslFI	GGGAC	3 cut(s)	118, 144, 596
BslI	CCNNNNNNNGG	3 cut(s)	367, 379, 786
BsmAI	GTCTC	2 cut(s)	256, 308
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	3 cut(s)	118, 144, 596
BsnI	GGCC	2 cut(s)	31, 779
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	4 cut(s)	32, 85, 362, 620
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
BspANI	GGCC	2 cut(s)	31, 779
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	9 cut(s)	38, 106, 132, 133, 179, 372, 383, 584, 627
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	4 cut(s)	172, 185, 474, 691
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	625
BspTNI	GGTCTC	1 cut(s)	308
BssECI	CCNNGG	5 cut(s)	32, 504, 621, 629, 780
BssHII	GCGCGC	1 cut(s)	276
BssMI	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
BssNI	GRCGYC	4 cut(s)	69, 249, 329, 626
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	391, 427, 489
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	4 cut(s)	69, 249, 329, 626
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstBAI	YACGTR	2 cut(s)	344, 700
BstC8I	GCNNGC	8 cut(s)	122, 126, 274, 278, 440, 536, 540, 844
BstDSI	CCRYGG	1 cut(s)	780
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	642
BstH2I	RGCGCY	2 cut(s)	545, 629
BstKTI	GATC	7 cut(s)	180, 246, 463, 482, 591, 597, 686
BstMAI	GTCTC	2 cut(s)	256, 308
BstMBI	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
BstMWI	GCNNNNNNNGC	8 cut(s)	121, 232, 246, 282, 427, 535, 665, 821
BstSCI	CCNGG	4 cut(s)	31, 32, 414, 628
BstV1I	GCAGC	3 cut(s)	238, 628, 668
BstX2I	RGATCY	3 cut(s)	177, 479, 683
BstYI	RGATCY	3 cut(s)	177, 479, 683
BsuRI	GGCC	2 cut(s)	31, 779
BtgI	CCRYGG	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	642
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	536
BveI	ACCTGC	1 cut(s)	561
Cac8I	GCNNGC	8 cut(s)	122, 126, 274, 278, 440, 536, 540, 844
CciI	TCATGA	1 cut(s)	591
Cfr13I	GGNCC	8 cut(s)	30, 105, 131, 262, 370, 382, 511, 583
Cfr9I	CCCGGG	1 cut(s)	32
CseI	GACGC	7 cut(s)	58, 238, 318, 361, 410, 608, 703
Csp6I	GTAC	3 cut(s)	475, 568, 766
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	112, 592
CviQI	GTAC	3 cut(s)	475, 568, 766
DinI	GGCGCC	1 cut(s)	627
DpnI	GATC	7 cut(s)	179, 245, 462, 481, 590, 596, 685
DpnII	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
DraIII	CACNNNGTG	1 cut(s)	715
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	2 cut(s)	649, 802
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	7 cut(s)	105, 131, 262, 370, 382, 511, 583
Eco72I	CACGTG	2 cut(s)	344, 700
Eco88I	CYCGRG	4 cut(s)	32, 85, 362, 620
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	5 cut(s)	105, 131, 262, 370, 583
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	627
EheI	GGCGCC	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	2 cut(s)	115, 595
FaiI	YATR	4 cut(s)	113, 593, 647, 741
FaqI	GGGAC	3 cut(s)	118, 144, 596
FatI	CATG	2 cut(s)	111, 591
FauI	CCCGC	3 cut(s)	121, 231, 602
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	8 cut(s)	97, 227, 238, 407, 605, 642, 657, 816
FokI	GGATG	1 cut(s)	649
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	8 cut(s)	97, 227, 238, 407, 605, 642, 657, 816
GluI	GCNGC	8 cut(s)	97, 227, 238, 407, 605, 642, 657, 816
HaeII	RGCGCY	2 cut(s)	545, 629
HaeIII	GGCC	2 cut(s)	31, 779
HapII	CCGG	4 cut(s)	33, 415, 557, 629
HgaI	GACGC	7 cut(s)	58, 238, 318, 361, 410, 608, 703
Hin1I	GRCGYC	4 cut(s)	69, 249, 329, 626
Hin1II	CATG	2 cut(s)	115, 595
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	3 cut(s)	314, 718, 805
HpaII	CCGG	4 cut(s)	33, 415, 557, 629
Hpy166II	GTNNAC	3 cut(s)	154, 568, 835
Hpy188I	TCNGA	4 cut(s)	25, 484, 505, 723
Hpy188III	TCNNGA	3 cut(s)	85, 385, 592
Hpy8I	GTNNAC	3 cut(s)	154, 568, 835
Hpy99I	CGWCG	8 cut(s)	50, 74, 214, 334, 355, 493, 602, 829
HpyAV	CCTTC	3 cut(s)	265, 669, 727
HpyCH4III	ACNGT	3 cut(s)	391, 427, 489
HpyCH4IV	ACGT	3 cut(s)	209, 343, 699
HpyCH4V	TGCA	4 cut(s)	285, 534, 709, 759
HpyF10VI	GCNNNNNNNGC	8 cut(s)	121, 232, 246, 282, 427, 535, 665, 821
HpySE526I	ACGT	3 cut(s)	209, 343, 699
Hsp92I	GRCGYC	4 cut(s)	69, 249, 329, 626
Hsp92II	CATG	2 cut(s)	115, 595
KasI	GGCGCC	1 cut(s)	625
KflI	GGGWCCC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	3 cut(s)	238, 628, 668
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	3 cut(s)	209, 343, 699
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	7 cut(s)	179, 245, 462, 481, 590, 596, 685
MboI	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	3 cut(s)	177, 479, 683
MhlI	GDGCHC	1 cut(s)	78
Mly113I	GGCGCC	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	308
MseI	TTAA	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	4 cut(s)	33, 415, 557, 629
MspR9I	CCNGG	4 cut(s)	33, 34, 416, 630
MteI	GCGCNGCGC	1 cut(s)	605
MwoI	GCNNNNNNNGC	8 cut(s)	121, 232, 246, 282, 427, 535, 665, 821
NarI	GGCGCC	1 cut(s)	626
NciI	CCSGG	4 cut(s)	33, 34, 416, 630
NdeII	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
NlaIII	CATG	2 cut(s)	115, 595
NlaIV	GGNNCC	9 cut(s)	38, 106, 132, 133, 179, 372, 383, 584, 627
NmeAIII	GCCGAG	2 cut(s)	285, 632
NmuCI	GTSAC	1 cut(s)	691
PaeR7I	CTCGAG	2 cut(s)	85, 362
PagI	TCATGA	1 cut(s)	591
PauI	GCGCGC	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 497, 567
PfeI	GAWTC	2 cut(s)	718, 805
PkrI	GCNGC	8 cut(s)	98, 228, 239, 408, 606, 643, 658, 817
PleI	GAGTC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	629
PmaCI	CACGTG	2 cut(s)	344, 700
PmlI	CACGTG	2 cut(s)	344, 700
PpsI	GAGTC	1 cut(s)	308
Ppu21I	YACGTR	2 cut(s)	344, 700
PpuMI	RGGWCCY	5 cut(s)	105, 131, 262, 370, 583
Psp5II	RGGWCCY	5 cut(s)	105, 131, 262, 370, 583
PspCI	CACGTG	2 cut(s)	344, 700
PspN4I	GGNNCC	9 cut(s)	38, 106, 132, 133, 179, 372, 383, 584, 627
PspPI	GGNCC	8 cut(s)	30, 105, 131, 262, 370, 382, 511, 583
PspPPI	RGGWCCY	5 cut(s)	105, 131, 262, 370, 583
PspXI	VCTCGAGB	1 cut(s)	362
PsuI	RGATCY	3 cut(s)	177, 479, 683
PteI	GCGCGC	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	476, 569, 767
RsaNI	GTAC	3 cut(s)	475, 568, 766
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	8 cut(s)	97, 227, 238, 407, 605, 642, 657, 816
Sau3AI	GATC	7 cut(s)	177, 243, 460, 479, 588, 594, 683
Sau96I	GGNCC	8 cut(s)	30, 105, 131, 262, 370, 382, 511, 583
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	4 cut(s)	33, 34, 416, 630
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	627
Sfr274I	CTCGAG	2 cut(s)	85, 362
SinI	GGWCC	7 cut(s)	105, 131, 262, 370, 382, 511, 583
SlaI	CTCGAG	2 cut(s)	85, 362
SmaI	CCCGGG	1 cut(s)	34
SmlI	CTYRAG	5 cut(s)	85, 266, 362, 395, 446
SmoI	CTYRAG	5 cut(s)	85, 266, 362, 395, 446
SspDI	GGCGCC	1 cut(s)	625
StyD4I	CCNGG	4 cut(s)	31, 32, 414, 628
TaaI	ACNGT	3 cut(s)	391, 427, 489
TaiI	ACGT	3 cut(s)	212, 346, 702
TaqI	TCGA	5 cut(s)	86, 258, 312, 363, 597
TaqII	GACCGA	1 cut(s)	290
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	5 cut(s)	99, 240, 409, 607, 818
TfiI	GAWTC	2 cut(s)	718, 805
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	3 cut(s)	226, 641, 656
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	17, 70
TspGWI	ACGGA	2 cut(s)	489, 842
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	1 cut(s)	536
VpaK11BI	GGWCC	7 cut(s)	105, 131, 262, 370, 382, 511, 583
XagI	CCTNNNNNAGG	1 cut(s)	365
XhoI	CTCGAG	2 cut(s)	85, 362
XmaI	CCCGGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.