Rh4BG304200

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005005
Physical Location & Seq
Forward (+)
47464350 .. 47465186
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG304200.1

Sequence Viewer

Length: 837 bp
ATGATCGAGATGAAGAATCGGAGCAATCTGAAGGGATTGTTGGCTGCCATTTTGGTCTTCTTCCTCGGCGCCGCGCTTTTTATCTCCAGCCTTACCGGAACCGGAACCCCCTTCCTCTGCTCTCTGCCTAAATCTGTTGACGATTATACCCCCACGGCGGTTCAGCTCCAGGCGGTGCTCCACTACGCCACGTCCCATACGACCCCGCAGCAATCGAGAGGCGAGATCGGCGTCTCCTTCGAGGTCCTCAAATCGCGGGCGCCGTGCAACTTCCTCGTATTCGGTCTCGGCCACGACTCCCTCATGTGGGCCTCGTTCAACCCACGTGGCACGACGCTGTTCCTTGAGGAGGATCCCAAGTGGGTCCAGACCATCCTCAAGGACGCGCCGGAGTTGCGGGCCGAGACCGTGAACTACCGCACGCAGCTGAAGCAGGCGGACGAGCTGCTCTCCTCGTACAAATCCGAACCAGCGTGCGCGCGGTCCGGGGCGGTCCTACGTGGCAACGAGCGGTGCAGGCTGGCGCTGAGCAACCTGCCGGACGAGGTGTACGAGAAGGAGTGGGACCTGATCATGATCGACGCGCCGCGGGGTTATTTTCCGGAGGCGCCTGGTCGGATGGCGGCTATATTCTCGGCGGCTGTCATGGCCAGGAGGAGGCGGGGATCAGGTGCCACGCACGTGTTCTTGCACGACGTGGACCGGAGGGTGGAGAAGGCTTTTGCTGAGGAGTTTCTCTGCCGGAAGTACCTTGTTAAGGCCGTCGGGAGGCTCTGGCATTTTGAGATTCCTTCAGCCGCTAACGCCACCGACGCCGCTGGCGCGCGTTTTTGCTAA

Protein Analysis

278

Amino Acids

30.88

Weight (kDa)

8.51

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 75 - 261 2.6e-83 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 543
AccB1I GGYRCC 4 cut(s) 68, 259, 607, 671
AccBSI CCGCTC 1 cut(s) 511
AccII CGCG 9 cut(s) 74, 256, 386, 479, 481, 584, 589, 824, 826
AccIII TCCGGA 1 cut(s) 601
AclWI GGATC 3 cut(s) 347, 360, 673
AcoI YGGCCR 2 cut(s) 289, 648
AcuI CTGAAG 3 cut(s) 50, 449, 777
AcvI CACGTG 2 cut(s) 326, 682
AcyI GRCGYC 5 cut(s) 69, 231, 260, 608, 813
AdeI CACNNNGTG 1 cut(s) 697
AfaI GTAC 3 cut(s) 458, 551, 749
AfiI CCNNNNNNNGG 8 cut(s) 157, 306, 307, 349, 657, 709, 757, 768
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 1 cut(s) 319
AjiI CACGTC 2 cut(s) 192, 697
AjnI CCWGG 3 cut(s) 168, 610, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 680
AluBI AGCT 3 cut(s) 166, 427, 445
AluI AGCT 3 cut(s) 166, 427, 445
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 238, 290, 398
AlwI GGATC 3 cut(s) 347, 360, 673
Aor13HI TCCGGA 1 cut(s) 601
AoxI GGCC 5 cut(s) 289, 309, 399, 648, 759
ApeKI GCWGC 4 cut(s) 44, 208, 424, 445
AspS9I GGNCC 8 cut(s) 244, 309, 364, 399, 483, 493, 565, 700
AsuC2I CCSGG 1 cut(s) 487
AvaII GGWCC 6 cut(s) 244, 364, 483, 493, 565, 700
BalI TGGCCA 1 cut(s) 650
BamHI GGATCC 1 cut(s) 352
BanI GGYRCC 4 cut(s) 68, 259, 607, 671
BbrPI CACGTG 2 cut(s) 326, 682
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 4 cut(s) 31, 220, 432, 436
BccI CCATC 2 cut(s) 380, 613
BceAI ACGGC 3 cut(s) 171, 247, 746
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 3 cut(s) 170, 612, 652
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 238, 290, 398
BfoI RGCGCY 4 cut(s) 72, 263, 527, 611
BfuAI ACCTGC 1 cut(s) 543
BlpI GCTNAGC 1 cut(s) 527
Bme1390I CCNGG 4 cut(s) 170, 487, 612, 652
Bme18I GGWCC 6 cut(s) 244, 364, 483, 493, 565, 700
BmgBI CACGTC 2 cut(s) 192, 697
BmgT120I GGNCC 8 cut(s) 244, 309, 364, 399, 483, 493, 565, 700
BmiI GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
BmrFI CCNGG 4 cut(s) 170, 487, 612, 652
BpiI GAAGAC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 2 cut(s) 70, 152
Bpu10I CCTNAGC 1 cut(s) 726
Bpu1102I GCTNAGC 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 362, 365
BpuMI CCSGG 1 cut(s) 487
BsaAI YACGTR 3 cut(s) 326, 500, 682
BsaBI GATNNNNATC 1 cut(s) 575
BsaHI GRCGYC 5 cut(s) 69, 231, 260, 608, 813
BsaI GGTCTC 2 cut(s) 290, 398
BsaJI CCNNGG 4 cut(s) 64, 153, 486, 587
BsaWI WCCGGW 4 cut(s) 95, 101, 601, 702
Bsc4I CCNNNNNNNGG 8 cut(s) 157, 306, 307, 349, 657, 709, 757, 768
Bse8I GATNNNNATC 1 cut(s) 575
BseAI TCCGGA 1 cut(s) 601
BseBI CCWGG 3 cut(s) 170, 612, 652
BseDI CCNNGG 4 cut(s) 64, 153, 486, 587
BseGI GGATG 2 cut(s) 372, 624
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 8 cut(s) 157, 306, 307, 349, 657, 709, 757, 768
BseMII CTCAG 2 cut(s) 518, 717
BsePI GCGCGC 2 cut(s) 477, 822
BseRI GAGGAG 4 cut(s) 362, 442, 670, 743
BseXI GCAGC 4 cut(s) 31, 220, 432, 436
BsgI GTGCAG 1 cut(s) 535
Bsh1236I CGCG 9 cut(s) 74, 256, 386, 479, 481, 584, 589, 824, 826
BshFI GGCC 5 cut(s) 291, 311, 401, 650, 761
BshNI GGYRCC 4 cut(s) 68, 259, 607, 671
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 8 cut(s) 96, 102, 389, 486, 539, 602, 703, 742
BslFI GGGAC 2 cut(s) 178, 578
BslI CCNNNNNNNGG 8 cut(s) 157, 306, 307, 349, 657, 709, 757, 768
BsmAI GTCTC 3 cut(s) 238, 290, 398
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 178, 578
BsnI GGCC 5 cut(s) 291, 311, 401, 650, 761
Bso31I GGTCTC 2 cut(s) 290, 398
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 601
Bsp143I GATC 6 cut(s) 3, 225, 352, 570, 576, 665
Bsp1720I GCTNAGC 1 cut(s) 527
BspANI GGCC 5 cut(s) 291, 311, 401, 650, 761
BspCNI CTCAG 2 cut(s) 519, 718
BspEI TCCGGA 1 cut(s) 601
BspFNI CGCG 9 cut(s) 74, 256, 386, 479, 481, 584, 589, 824, 826
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
BspMI ACCTGC 1 cut(s) 543
BspPI GGATC 3 cut(s) 347, 360, 673
BspT107I GGYRCC 4 cut(s) 68, 259, 607, 671
BspTNI GGTCTC 2 cut(s) 290, 398
BsrBI CCGCTC 1 cut(s) 511
BssECI CCNNGG 4 cut(s) 64, 153, 486, 587
BssHII GCGCGC 2 cut(s) 477, 822
BssMI GATC 6 cut(s) 3, 225, 352, 570, 576, 665
BssNI GRCGYC 5 cut(s) 69, 231, 260, 608, 813
Bst2UI CCWGG 3 cut(s) 170, 612, 652
Bst4CI ACNGT 1 cut(s) 409
BstACI GRCGYC 5 cut(s) 69, 231, 260, 608, 813
BstBAI YACGTR 3 cut(s) 326, 500, 682
BstDEI CTNAG 2 cut(s) 527, 726
BstDSI CCRYGG 2 cut(s) 153, 587
BstENI CCTNNNNNAGG 2 cut(s) 347, 755
BstF5I GGATG 2 cut(s) 372, 624
BstFNI CGCG 9 cut(s) 74, 256, 386, 479, 481, 584, 589, 824, 826
BstH2I RGCGCY 4 cut(s) 72, 263, 527, 611
BstKTI GATC 6 cut(s) 6, 228, 355, 573, 579, 668
BstMAI GTCTC 3 cut(s) 238, 290, 398
BstMBI GATC 6 cut(s) 3, 225, 352, 570, 576, 665
BstMWI GCNNNNNNNGC 8 cut(s) 228, 394, 430, 517, 647, 803, 812, 821
BstNI CCWGG 3 cut(s) 170, 612, 652
BstSCI CCNGG 4 cut(s) 168, 485, 610, 650
BstUI CGCG 9 cut(s) 74, 256, 386, 479, 481, 584, 589, 824, 826
BstV1I GCAGC 4 cut(s) 31, 220, 432, 436
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 5 cut(s) 291, 311, 401, 650, 761
BtgI CCRYGG 2 cut(s) 153, 587
BtrI CACGTC 2 cut(s) 192, 697
BtsCI GGATG 2 cut(s) 372, 624
BveI ACCTGC 1 cut(s) 543
CciI TCATGA 1 cut(s) 573
Cfr13I GGNCC 8 cut(s) 244, 309, 364, 399, 483, 493, 565, 700
Cfr42I CCGCGG 1 cut(s) 590
CpoI CGGWCCG 1 cut(s) 483
CseI GACGC 5 cut(s) 220, 343, 392, 590, 821
Csp6I GTAC 3 cut(s) 457, 550, 748
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CspI CGGWCCG 1 cut(s) 483
CviAII CATG 3 cut(s) 304, 574, 646
CviQI GTAC 3 cut(s) 457, 550, 748
DdeI CTNAG 2 cut(s) 527, 726
DinI GGCGCC 3 cut(s) 70, 261, 609
DpnI GATC 6 cut(s) 5, 227, 354, 572, 578, 667
DpnII GATC 6 cut(s) 3, 225, 352, 570, 576, 665
DraIII CACNNNGTG 1 cut(s) 697
EaeI YGGCCR 2 cut(s) 289, 648
EciI GGCGGA 1 cut(s) 452
Eco31I GGTCTC 2 cut(s) 290, 398
Eco47I GGWCC 6 cut(s) 244, 364, 483, 493, 565, 700
Eco57I CTGAAG 3 cut(s) 50, 449, 777
Eco72I CACGTG 2 cut(s) 326, 682
EcoNI CCTNNNNNAGG 2 cut(s) 347, 755
EcoO109I RGGNCCY 2 cut(s) 244, 565
EcoRII CCWGG 3 cut(s) 168, 610, 650
EgeI GGCGCC 3 cut(s) 70, 261, 609
EheI GGCGCC 3 cut(s) 70, 261, 609
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 3 cut(s) 307, 577, 649
FaiI YATR 6 cut(s) 147, 198, 305, 575, 629, 647
FaqI GGGAC 2 cut(s) 178, 578
FatI CATG 3 cut(s) 303, 573, 645
FauI CCCGC 5 cut(s) 213, 249, 390, 582, 654
FbaI TGATCA 1 cut(s) 570
FokI GGATG 2 cut(s) 359, 631
GsuI CTGGAG 2 cut(s) 70, 152
HaeII RGCGCY 4 cut(s) 72, 263, 527, 611
HaeIII GGCC 5 cut(s) 291, 311, 401, 650, 761
HapII CCGG 8 cut(s) 96, 102, 389, 486, 539, 602, 703, 742
HgaI GACGC 5 cut(s) 220, 343, 392, 590, 821
Hin1I GRCGYC 5 cut(s) 69, 231, 260, 608, 813
Hin1II CATG 3 cut(s) 307, 577, 649
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 16, 296, 787
HpaII CCGG 8 cut(s) 96, 102, 389, 486, 539, 602, 703, 742
Hpy166II GTNNAC 4 cut(s) 139, 412, 550, 700
Hpy188I TCNGA 4 cut(s) 21, 30, 466, 618
Hpy188III TCNNGA 6 cut(s) 7, 216, 367, 574, 602, 766
Hpy8I GTNNAC 4 cut(s) 139, 412, 550, 700
Hpy99I CGWCG 5 cut(s) 337, 584, 698, 767, 815
HpyAV CCTTC 6 cut(s) 25, 121, 247, 550, 709, 801
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 5 cut(s) 191, 325, 499, 681, 696
HpyCH4V TGCA 3 cut(s) 267, 516, 691
HpyF10VI GCNNNNNNNGC 8 cut(s) 228, 394, 430, 517, 647, 803, 812, 821
HpyF3I CTNAG 2 cut(s) 527, 726
HpySE526I ACGT 5 cut(s) 191, 325, 499, 681, 696
Hsp92I GRCGYC 5 cut(s) 69, 231, 260, 608, 813
Hsp92II CATG 3 cut(s) 307, 577, 649
KasI GGCGCC 3 cut(s) 68, 259, 607
Kpn2I TCCGGA 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 570
KspI CCGCGG 1 cut(s) 590
Kzo9I GATC 6 cut(s) 3, 225, 352, 570, 576, 665
LmnI GCTCC 3 cut(s) 21, 171, 183
Lsp1109I GCAGC 4 cut(s) 31, 220, 432, 436
MaeII ACGT 5 cut(s) 191, 325, 499, 681, 696
MalI GATC 6 cut(s) 5, 227, 354, 572, 578, 667
MbiI CCGCTC 1 cut(s) 511
MboI GATC 6 cut(s) 3, 225, 352, 570, 576, 665
MboII GAAGA 3 cut(s) 25, 49, 52
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 650
MluNI TGGCCA 1 cut(s) 650
Mly113I GGCGCC 3 cut(s) 69, 260, 608
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 596
Mox20I TGGCCA 1 cut(s) 650
MroI TCCGGA 1 cut(s) 601
MscI TGGCCA 1 cut(s) 650
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 650
MspA1I CMGCKG 3 cut(s) 427, 589, 818
MspI CCGG 8 cut(s) 96, 102, 389, 486, 539, 602, 703, 742
MspR9I CCNGG 4 cut(s) 170, 487, 612, 652
MteI GCGCNGCGC 1 cut(s) 72
MvaI CCWGG 3 cut(s) 170, 612, 652
MvnI CGCG 9 cut(s) 74, 256, 386, 479, 481, 584, 589, 824, 826
MwoI GCNNNNNNNGC 8 cut(s) 228, 394, 430, 517, 647, 803, 812, 821
NarI GGCGCC 3 cut(s) 69, 260, 608
NciI CCSGG 1 cut(s) 487
NdeII GATC 6 cut(s) 3, 225, 352, 570, 576, 665
NlaIII CATG 3 cut(s) 307, 577, 649
NlaIV GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
NmeAIII GCCGAG 4 cut(s) 45, 267, 427, 614
OliI CACNNNNGTG 1 cut(s) 680
PagI TCATGA 1 cut(s) 573
PauI GCGCGC 2 cut(s) 477, 822
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 260, 549
PfeI GAWTC 2 cut(s) 16, 787
PleI GAGTC 1 cut(s) 290
PluTI GGCGCC 3 cut(s) 72, 263, 611
PmaCI CACGTG 2 cut(s) 326, 682
PmlI CACGTG 2 cut(s) 326, 682
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 3 cut(s) 326, 500, 682
PpuMI RGGWCCY 2 cut(s) 244, 565
Psp5II RGGWCCY 2 cut(s) 244, 565
Psp6I CCWGG 3 cut(s) 168, 610, 650
PspCI CACGTG 2 cut(s) 326, 682
PspGI CCWGG 3 cut(s) 168, 610, 650
PspN4I GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
PspPI GGNCC 8 cut(s) 244, 309, 364, 399, 483, 493, 565, 700
PspPPI RGGWCCY 2 cut(s) 244, 565
PsuI RGATCY 1 cut(s) 352
PteI GCGCGC 2 cut(s) 477, 822
PvuII CAGCTG 1 cut(s) 427
RsaI GTAC 3 cut(s) 458, 551, 749
RsaNI GTAC 3 cut(s) 457, 550, 748
RseI CAYNNNNRTG 1 cut(s) 680
Rsr2I CGGWCCG 1 cut(s) 483
RsrII CGGWCCG 1 cut(s) 483
SacII CCGCGG 1 cut(s) 590
SaqAI TTAA 1 cut(s) 756
Sau3AI GATC 6 cut(s) 3, 225, 352, 570, 576, 665
Sau96I GGNCC 8 cut(s) 244, 309, 364, 399, 483, 493, 565, 700
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 170, 487, 612, 652
SduI GDGCHC 1 cut(s) 180
SfoI GGCGCC 3 cut(s) 70, 261, 609
Sfr303I CCGCGG 1 cut(s) 590
SgrBI CCGCGG 1 cut(s) 590
SinI GGWCC 6 cut(s) 244, 364, 483, 493, 565, 700
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 344, 377
SmoI CTYRAG 2 cut(s) 344, 377
SspDI GGCGCC 3 cut(s) 68, 259, 607
StyD4I CCNGG 4 cut(s) 168, 485, 610, 650
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 5 cut(s) 194, 328, 502, 684, 699
TaqI TCGA 4 cut(s) 6, 215, 240, 579
TaqII GACCGA 1 cut(s) 272
TauI GCSGC 6 cut(s) 74, 589, 626, 641, 800, 818
TfiI GAWTC 2 cut(s) 16, 787
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TseI GCWGC 4 cut(s) 44, 208, 424, 445
TspDTI ATGAA 1 cut(s) 26
VpaK11BI GGWCC 6 cut(s) 244, 364, 483, 493, 565, 700
XagI CCTNNNNNAGG 2 cut(s) 347, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.