Rh4DG301700

Polysaccharide biosynthesis

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
52343086 .. 52343922
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG301700.1

Sequence Viewer

Length: 837 bp
ATGATCGAGATGAAGAATCGGAGCAATCTGAAGGGATTGTTGGCTGCCATTTTGGTCTTCTTCCTCGGCGCCGCGCTTTTTATCTCCAGCTTTACCGGAACCGGAACCCCCTTCCTCTGCTCTCTGCCTAAATTTGTTGACGATTATACCCCCACAGCGGTTCAGCTCCAGGCGGTGCTCCACTACGCTACGTCCCATACGACCCCGCAGCAATCGAGAGGCGAGATCGGCGTCTCCTTCGAGGTCCTCAGATCGCGGGCGCCGTGCAACTTCCTCGTATTCGGTCTCGGCCACGACTCGCTCATGTGGGCCTCGTTTAACCCACGTGGCACGACGCTGTTCCTTGAGGAGGACCCCAAGTGGGTCCAGACCATCCTGAAGGACGCGCCGGAGTTGCGGGCCGAGACCGTGAACTACCGCACGCAGTTGAAGCAGGCGGACGAGCTGCTCTCCTCGTACAAATCCGAACCGGCGTGCGCGCAGTCCGGGGCGGTCCTACGTGGCAACGAGCGGTGCAAGCTGGCGCTGAGCAACCTGCCGGACGAGGTGTACGACAAGGAGTGGGACCTGATCATGATCGACGCGCCGCGGGGTTATTTTCCCGAGGCGCCTGGTCGGATGGCGGCTATATTCTCGGCGGCTGTCATGGCCAGGAGGAGGCGGGGATCAGGTGCCACGCACGTGTTCTTGCACGACGTGGACCGGAAGGTGGAGAAGGCTTTTGCCGAGGAGTTTCTTTGCCGGAAGTACCTTGTTAAGGCCGTCGGGAGGCTCTGGCATTTTGAGATTCCTTCAGCCGCTAACGCCACCGACACCGCTGGCGTGCGTTTTTGCTAA

Protein Analysis

278

Amino Acids

30.96

Weight (kDa)

8.19

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 75 - 261 8.4e-84 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 543
AccB1I GGYRCC 4 cut(s) 68, 259, 607, 671
AccBSI CCGCTC 1 cut(s) 511
AccII CGCG 6 cut(s) 74, 256, 386, 479, 584, 589
AclWI GGATC 1 cut(s) 673
AcoI YGGCCR 2 cut(s) 289, 648
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 3 cut(s) 50, 398, 777
AcvI CACGTG 2 cut(s) 326, 682
AcyI GRCGYC 4 cut(s) 69, 231, 260, 608
AdeI CACNNNGTG 1 cut(s) 697
AfaI GTAC 3 cut(s) 458, 551, 749
AfiI CCNNNNNNNGG 7 cut(s) 157, 349, 361, 657, 709, 757, 768
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 1 cut(s) 430
AjiI CACGTC 1 cut(s) 697
AjnI CCWGG 3 cut(s) 168, 610, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 680
AluBI AGCT 4 cut(s) 90, 166, 445, 520
AluI AGCT 4 cut(s) 90, 166, 445, 520
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 238, 290, 398
AlwI GGATC 1 cut(s) 673
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 5 cut(s) 289, 309, 399, 648, 759
ApeKI GCWGC 3 cut(s) 44, 208, 445
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 9 cut(s) 71, 76, 262, 388, 479, 481, 526, 586, 610
AspS9I GGNCC 8 cut(s) 244, 309, 352, 364, 399, 493, 565, 700
AsuC2I CCSGG 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 6 cut(s) 244, 352, 364, 493, 565, 700
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 4 cut(s) 68, 259, 607, 671
BbrPI CACGTG 2 cut(s) 326, 682
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 31, 220, 432
BccI CCATC 2 cut(s) 380, 613
BceAI ACGGC 2 cut(s) 247, 746
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 3 cut(s) 170, 612, 652
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 238, 290, 398
BfoI RGCGCY 4 cut(s) 72, 263, 527, 611
BfuAI ACCTGC 1 cut(s) 543
BisI GCNGC 8 cut(s) 45, 72, 209, 446, 587, 624, 639, 798
BlpI GCTNAGC 1 cut(s) 527
BlsI GCNGC 8 cut(s) 46, 73, 210, 447, 588, 625, 640, 799
Bme1390I CCNGG 4 cut(s) 170, 487, 612, 652
Bme18I GGWCC 6 cut(s) 244, 352, 364, 493, 565, 700
BmeT110I CYCGRG 1 cut(s) 602
BmgBI CACGTC 1 cut(s) 697
BmgT120I GGNCC 8 cut(s) 244, 309, 352, 364, 399, 493, 565, 700
BmiI GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
BmrFI CCNGG 4 cut(s) 170, 487, 612, 652
BpiI GAAGAC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 2 cut(s) 70, 152
Bpu1102I GCTNAGC 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 487
BsaAI YACGTR 3 cut(s) 326, 500, 682
BsaBI GATNNNNATC 1 cut(s) 575
BsaHI GRCGYC 4 cut(s) 69, 231, 260, 608
BsaI GGTCTC 2 cut(s) 290, 398
BsaJI CCNNGG 5 cut(s) 64, 486, 587, 603, 726
BsaWI WCCGGW 3 cut(s) 95, 101, 702
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 349, 361, 657, 709, 757, 768
Bse118I RCCGGY 1 cut(s) 469
Bse8I GATNNNNATC 1 cut(s) 575
BseBI CCWGG 3 cut(s) 170, 612, 652
BseDI CCNNGG 5 cut(s) 64, 486, 587, 603, 726
BseGI GGATG 2 cut(s) 372, 624
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 7 cut(s) 157, 349, 361, 657, 709, 757, 768
BseMII CTCAG 2 cut(s) 262, 518
BsePI GCGCGC 1 cut(s) 477
BseRI GAGGAG 4 cut(s) 362, 442, 670, 743
BseXI GCAGC 3 cut(s) 31, 220, 432
Bsh1236I CGCG 6 cut(s) 74, 256, 386, 479, 584, 589
BshFI GGCC 5 cut(s) 291, 311, 401, 650, 761
BshNI GGYRCC 4 cut(s) 68, 259, 607, 671
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 8 cut(s) 96, 102, 389, 470, 486, 539, 703, 742
BslFI GGGAC 2 cut(s) 178, 578
BslI CCNNNNNNNGG 7 cut(s) 157, 349, 361, 657, 709, 757, 768
BsmAI GTCTC 3 cut(s) 238, 290, 398
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 178, 578
BsnI GGCC 5 cut(s) 291, 311, 401, 650, 761
Bso31I GGTCTC 2 cut(s) 290, 398
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 6 cut(s) 3, 225, 251, 570, 576, 665
Bsp1720I GCTNAGC 1 cut(s) 527
BspANI GGCC 5 cut(s) 291, 311, 401, 650, 761
BspCNI CTCAG 2 cut(s) 261, 519
BspFNI CGCG 6 cut(s) 74, 256, 386, 479, 584, 589
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
BspMI ACCTGC 1 cut(s) 543
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 4 cut(s) 68, 259, 607, 671
BspTNI GGTCTC 2 cut(s) 290, 398
BsrBI CCGCTC 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 5 cut(s) 64, 486, 587, 603, 726
BssHII GCGCGC 1 cut(s) 477
BssMI GATC 6 cut(s) 3, 225, 251, 570, 576, 665
BssNI GRCGYC 4 cut(s) 69, 231, 260, 608
Bst2UI CCWGG 3 cut(s) 170, 612, 652
Bst4CI ACNGT 1 cut(s) 409
BstACI GRCGYC 4 cut(s) 69, 231, 260, 608
BstBAI YACGTR 3 cut(s) 326, 500, 682
BstDEI CTNAG 2 cut(s) 248, 527
BstDSI CCRYGG 1 cut(s) 587
BstENI CCTNNNNNAGG 2 cut(s) 347, 755
BstF5I GGATG 2 cut(s) 372, 624
BstFNI CGCG 6 cut(s) 74, 256, 386, 479, 584, 589
BstH2I RGCGCY 4 cut(s) 72, 263, 527, 611
BstHHI GCGC 9 cut(s) 71, 76, 262, 388, 479, 481, 526, 586, 610
BstKTI GATC 6 cut(s) 6, 228, 254, 573, 579, 668
BstMAI GTCTC 3 cut(s) 238, 290, 398
BstMBI GATC 6 cut(s) 3, 225, 251, 570, 576, 665
BstMWI GCNNNNNNNGC 6 cut(s) 228, 394, 430, 517, 647, 803
BstNI CCWGG 3 cut(s) 170, 612, 652
BstSCI CCNGG 4 cut(s) 168, 485, 610, 650
BstUI CGCG 6 cut(s) 74, 256, 386, 479, 584, 589
BstV1I GCAGC 3 cut(s) 31, 220, 432
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 5 cut(s) 291, 311, 401, 650, 761
BtgI CCRYGG 1 cut(s) 587
BtrI CACGTC 1 cut(s) 697
BtsCI GGATG 2 cut(s) 372, 624
BveI ACCTGC 1 cut(s) 543
CciI TCATGA 1 cut(s) 573
CfoI GCGC 9 cut(s) 71, 76, 262, 388, 479, 481, 526, 586, 610
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 8 cut(s) 244, 309, 352, 364, 399, 493, 565, 700
Cfr42I CCGCGG 1 cut(s) 590
CseI GACGC 4 cut(s) 220, 343, 392, 590
Csp6I GTAC 3 cut(s) 457, 550, 748
CviAII CATG 3 cut(s) 304, 574, 646
CviQI GTAC 3 cut(s) 457, 550, 748
DdeI CTNAG 2 cut(s) 248, 527
DinI GGCGCC 3 cut(s) 70, 261, 609
DpnI GATC 6 cut(s) 5, 227, 253, 572, 578, 667
DpnII GATC 6 cut(s) 3, 225, 251, 570, 576, 665
DraIII CACNNNGTG 1 cut(s) 697
EaeI YGGCCR 2 cut(s) 289, 648
EciI GGCGGA 1 cut(s) 452
Eco31I GGTCTC 2 cut(s) 290, 398
Eco47I GGWCC 6 cut(s) 244, 352, 364, 493, 565, 700
Eco57I CTGAAG 3 cut(s) 50, 398, 777
Eco72I CACGTG 2 cut(s) 326, 682
Eco88I CYCGRG 1 cut(s) 602
EcoNI CCTNNNNNAGG 2 cut(s) 347, 755
EcoO109I RGGNCCY 3 cut(s) 244, 352, 565
EcoRII CCWGG 3 cut(s) 168, 610, 650
EgeI GGCGCC 3 cut(s) 70, 261, 609
EheI GGCGCC 3 cut(s) 70, 261, 609
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 3 cut(s) 307, 577, 649
FaiI YATR 6 cut(s) 147, 198, 305, 575, 629, 647
FaqI GGGAC 2 cut(s) 178, 578
FatI CATG 3 cut(s) 303, 573, 645
FauI CCCGC 5 cut(s) 213, 249, 390, 582, 654
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 8 cut(s) 45, 72, 209, 446, 587, 624, 639, 798
FokI GGATG 2 cut(s) 359, 631
Fsp4HI GCNGC 8 cut(s) 45, 72, 209, 446, 587, 624, 639, 798
GlaI GCGC 9 cut(s) 70, 75, 261, 387, 478, 480, 525, 585, 609
GluI GCNGC 8 cut(s) 45, 72, 209, 446, 587, 624, 639, 798
GsuI CTGGAG 2 cut(s) 70, 152
HaeII RGCGCY 4 cut(s) 72, 263, 527, 611
HaeIII GGCC 5 cut(s) 291, 311, 401, 650, 761
HapII CCGG 8 cut(s) 96, 102, 389, 470, 486, 539, 703, 742
HgaI GACGC 4 cut(s) 220, 343, 392, 590
HhaI GCGC 9 cut(s) 71, 76, 262, 388, 479, 481, 526, 586, 610
Hin1I GRCGYC 4 cut(s) 69, 231, 260, 608
Hin1II CATG 3 cut(s) 307, 577, 649
Hin6I GCGC 9 cut(s) 69, 74, 260, 386, 477, 479, 524, 584, 608
HinP1I GCGC 9 cut(s) 69, 74, 260, 386, 477, 479, 524, 584, 608
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 16, 296, 787
HpaII CCGG 8 cut(s) 96, 102, 389, 470, 486, 539, 703, 742
Hpy166II GTNNAC 4 cut(s) 139, 412, 550, 700
Hpy188I TCNGA 5 cut(s) 21, 30, 251, 466, 618
Hpy188III TCNNGA 7 cut(s) 7, 216, 367, 376, 574, 602, 766
Hpy8I GTNNAC 4 cut(s) 139, 412, 550, 700
Hpy99I CGWCG 4 cut(s) 337, 584, 698, 767
HpyAV CCTTC 7 cut(s) 25, 121, 247, 373, 700, 709, 801
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 5 cut(s) 191, 325, 499, 681, 696
HpyCH4V TGCA 3 cut(s) 267, 516, 691
HpyF10VI GCNNNNNNNGC 6 cut(s) 228, 394, 430, 517, 647, 803
HpyF3I CTNAG 2 cut(s) 248, 527
HpySE526I ACGT 5 cut(s) 191, 325, 499, 681, 696
Hsp92I GRCGYC 4 cut(s) 69, 231, 260, 608
Hsp92II CATG 3 cut(s) 307, 577, 649
HspAI GCGC 9 cut(s) 69, 74, 260, 386, 477, 479, 524, 584, 608
KasI GGCGCC 3 cut(s) 68, 259, 607
Ksp22I TGATCA 1 cut(s) 570
KspI CCGCGG 1 cut(s) 590
Kzo9I GATC 6 cut(s) 3, 225, 251, 570, 576, 665
LmnI GCTCC 3 cut(s) 21, 171, 183
Lsp1109I GCAGC 3 cut(s) 31, 220, 432
MaeII ACGT 5 cut(s) 191, 325, 499, 681, 696
MalI GATC 6 cut(s) 5, 227, 253, 572, 578, 667
MbiI CCGCTC 1 cut(s) 511
MboI GATC 6 cut(s) 3, 225, 251, 570, 576, 665
MboII GAAGA 3 cut(s) 25, 49, 52
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 650
Mly113I GGCGCC 3 cut(s) 69, 260, 608
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 596
Mox20I TGGCCA 1 cut(s) 650
MscI TGGCCA 1 cut(s) 650
MseI TTAA 2 cut(s) 318, 756
MslI CAYNNNNRTG 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 650
MspA1I CMGCKG 3 cut(s) 158, 589, 818
MspI CCGG 8 cut(s) 96, 102, 389, 470, 486, 539, 703, 742
MspR9I CCNGG 4 cut(s) 170, 487, 612, 652
MteI GCGCNGCGC 1 cut(s) 72
MvaI CCWGG 3 cut(s) 170, 612, 652
MvnI CGCG 6 cut(s) 74, 256, 386, 479, 584, 589
MwoI GCNNNNNNNGC 6 cut(s) 228, 394, 430, 517, 647, 803
NarI GGCGCC 3 cut(s) 69, 260, 608
NciI CCSGG 1 cut(s) 487
NdeII GATC 6 cut(s) 3, 225, 251, 570, 576, 665
NlaIII CATG 3 cut(s) 307, 577, 649
NlaIV GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
NmeAIII GCCGAG 5 cut(s) 45, 267, 427, 614, 751
OliI CACNNNNGTG 1 cut(s) 680
PagI TCATGA 1 cut(s) 573
PauI GCGCGC 1 cut(s) 477
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 260, 549
PfeI GAWTC 2 cut(s) 16, 787
PkrI GCNGC 8 cut(s) 46, 73, 210, 447, 588, 625, 640, 799
PleI GAGTC 1 cut(s) 290
PluTI GGCGCC 3 cut(s) 72, 263, 611
PmaCI CACGTG 2 cut(s) 326, 682
PmlI CACGTG 2 cut(s) 326, 682
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 3 cut(s) 326, 500, 682
PpuMI RGGWCCY 3 cut(s) 244, 352, 565
Psp5II RGGWCCY 3 cut(s) 244, 352, 565
Psp6I CCWGG 3 cut(s) 168, 610, 650
PspCI CACGTG 2 cut(s) 326, 682
PspGI CCWGG 3 cut(s) 168, 610, 650
PspN4I GGNNCC 9 cut(s) 70, 100, 106, 261, 354, 365, 566, 609, 673
PspPI GGNCC 8 cut(s) 244, 309, 352, 364, 399, 493, 565, 700
PspPPI RGGWCCY 3 cut(s) 244, 352, 565
PteI GCGCGC 1 cut(s) 477
RsaI GTAC 3 cut(s) 458, 551, 749
RsaNI GTAC 3 cut(s) 457, 550, 748
RseI CAYNNNNRTG 1 cut(s) 680
SacII CCGCGG 1 cut(s) 590
SaqAI TTAA 2 cut(s) 318, 756
SatI GCNGC 8 cut(s) 45, 72, 209, 446, 587, 624, 639, 798
Sau3AI GATC 6 cut(s) 3, 225, 251, 570, 576, 665
Sau96I GGNCC 8 cut(s) 244, 309, 352, 364, 399, 493, 565, 700
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 170, 487, 612, 652
SduI GDGCHC 1 cut(s) 180
SfoI GGCGCC 3 cut(s) 70, 261, 609
Sfr303I CCGCGG 1 cut(s) 590
SgrBI CCGCGG 1 cut(s) 590
SinI GGWCC 6 cut(s) 244, 352, 364, 493, 565, 700
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 131
SspDI GGCGCC 3 cut(s) 68, 259, 607
StyD4I CCNGG 4 cut(s) 168, 485, 610, 650
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 5 cut(s) 194, 328, 502, 684, 699
TaqI TCGA 4 cut(s) 6, 215, 240, 579
TaqII GACCGA 1 cut(s) 272
TasI AATT 1 cut(s) 131
TauI GCSGC 5 cut(s) 74, 589, 626, 641, 800
TfiI GAWTC 2 cut(s) 16, 787
Tru1I TTAA 2 cut(s) 318, 756
Tru9I TTAA 2 cut(s) 318, 756
TseI GCWGC 3 cut(s) 44, 208, 445
TspDTI ATGAA 1 cut(s) 26
VpaK11BI GGWCC 6 cut(s) 244, 352, 364, 493, 565, 700
XagI CCTNNNNNAGG 2 cut(s) 347, 755
XapI RAATTY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.