AT1G28510

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004304
Physical Location & Seq
Forward (+)
10023817 .. 10026311
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28510.1

Sequence Viewer

Length: 516 bp
ATGGTGTTGCCGTTGATGAAACTGGGCACACTCGCCGTCAAAACCATAAGTAAACCATTGGCTAGTCAGCTCAAGCACCAAGCTAAGGTTCATCCCAAGTTTCGTCAATCTATCATCAACTTCGCTCAGAGGAATCATCGAATCACTACGCAAATGCAAAGAAGGATATATGGTCATGCCACTGATGTAGAGATTCGTCCCTTAGATGAGGAAAAGGCTGTTCAAGCTGCTGTTGACCTCATTGGAGAGATCTTTCTCTTTGGGGTCGGTGGAGCTGTTGTTGTTTTTGAGGTGCAGAGAAGTTCGCGGTCAGAAGCAAGAAAAGAGGAAGCACGTAAGCAAGAACTAGAGGAGTTGAGAATAAAAGATGAAGAACTAGAAAAGCAAGTGGCAGATCTCAAGAGCAAGCTAGAGGAGCTTGAACAACTTGCTAAGGCACGAGGACTGAGCGGTATTTTCCAGTTAAAACCACAGCCTGGTACTACCGCTAGTGGGAAACCAGACAAATCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

171

Amino Acids

19.18

Weight (kDa)

9.58

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 6 - 126 3.8e-44 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AccBSI CCGCTC 1 cut(s) 450
AccII CGCG 1 cut(s) 307
AciI CCGC 3 cut(s) 307, 450, 486
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 3 cut(s) 85, 476, 492
AgsI TTSAA 2 cut(s) 224, 422
AjnI CCWGG 1 cut(s) 475
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 6 cut(s) 70, 83, 227, 275, 409, 418
AluI AGCT 6 cut(s) 70, 83, 227, 275, 409, 418
ApeKI GCWGC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 29
BauI CACGAG 1 cut(s) 438
BbvI GCAGC 1 cut(s) 214
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 477
BfaI CTAG 5 cut(s) 63, 347, 377, 410, 489
BglII AGATCT 2 cut(s) 249, 394
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 477
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
Bpu10I CCTNAGC 2 cut(s) 84, 432
BpuEI CTTGAG 2 cut(s) 56, 383
BsaAI YACGTR 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 476, 492
Bse1I ACTGG 3 cut(s) 27, 460, 510
BseBI CCWGG 1 cut(s) 477
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 85, 476, 492
BseMII CTCAG 2 cut(s) 140, 437
BseNI ACTGG 3 cut(s) 27, 460, 510
BseRI GAGGAG 2 cut(s) 365, 428
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 85, 476, 492
BsmFI GGGAC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 249, 394
BspACI CCGC 3 cut(s) 307, 450, 486
BspCNI CTCAG 2 cut(s) 139, 438
BspFNI CGCG 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 450
BsrI ACTGG 3 cut(s) 27, 460, 510
BssMI GATC 2 cut(s) 249, 394
BssSI CACGAG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 5 cut(s) 84, 126, 202, 432, 446
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 2 cut(s) 252, 397
BstMBI GATC 2 cut(s) 249, 394
BstMWI GCNNNNNNNGC 2 cut(s) 224, 415
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 29
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 249, 394
BstYI RGATCY 2 cut(s) 249, 394
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 480
CviAII CATG 1 cut(s) 176
CviJI RGCY 9 cut(s) 62, 70, 83, 218, 227, 275, 409, 418, 475
CviKI_1 RGCY 9 cut(s) 62, 70, 83, 218, 227, 275, 409, 418, 475
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 5 cut(s) 84, 126, 202, 432, 446
DpnI GATC 2 cut(s) 251, 396
DpnII GATC 2 cut(s) 249, 394
EcoRII CCWGG 1 cut(s) 475
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 47, 169, 171, 177
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 5 cut(s) 63, 347, 377, 410, 489
GluI GCNGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 179
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 133, 141, 193
Hpy166II GTNNAC 2 cut(s) 53, 235
Hpy188I TCNGA 2 cut(s) 129, 313
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 2 cut(s) 53, 235
HpyAV CCTTC 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 157, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 415
HpyF3I CTNAG 5 cut(s) 84, 126, 202, 432, 446
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 1 cut(s) 179
Kzo9I GATC 2 cut(s) 249, 394
LmnI GCTCC 2 cut(s) 272, 415
LpnPI CCDG 4 cut(s) 8, 462, 473, 489
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 5 cut(s) 63, 347, 377, 410, 489
MaeII ACGT 1 cut(s) 334
MalI GATC 2 cut(s) 251, 396
MbiI CCGCTC 1 cut(s) 450
MboI GATC 2 cut(s) 249, 394
MboII GAAGA 1 cut(s) 383
MflI RGATCY 2 cut(s) 249, 394
MhlI GDGCHC 1 cut(s) 29
MnlI CCTC 8 cut(s) 123, 202, 248, 283, 319, 343, 406, 434
MseI TTAA 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 224, 415
NdeII GATC 2 cut(s) 249, 394
NlaIII CATG 1 cut(s) 179
PfeI GAWTC 3 cut(s) 133, 141, 193
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PsuI RGATCY 2 cut(s) 249, 394
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 249, 394
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 29
SmlI CTYRAG 2 cut(s) 71, 398
SmoI CTYRAG 2 cut(s) 71, 398
SsiI CCGC 3 cut(s) 307, 450, 486
SspMI CTAG 5 cut(s) 63, 347, 377, 410, 489
StyD4I CCNGG 1 cut(s) 475
TaiI ACGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 139
TfiI GAWTC 3 cut(s) 133, 141, 193
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 187
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 32, 80, 384
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 476
XspI CTAG 5 cut(s) 63, 347, 377, 410, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.