Rw2G026800

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004304
Physical Location & Seq
Forward (+)
41694520 .. 41697417
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026800.1

Sequence Viewer

Length: 405 bp
ATGATCCTACCAGCGGTTAAGTTAGGAACCCTTGCCCTGAAAACCTTCTGCAAACCCATTGCCAATCGCCTCAAGAAAGAGGCTGGCTTGCACCCCAGGTTTAGGCAGTTCATCATCAACATTGCCCAGGCAAATCATCGATTTACAACAAATGTGCAAAGACGGATTTATGGTCATTCAACTGATGTTGCTATTCGTCCACTGAACGAGGAGAAAGCTGTCCAAGCTGCTGCAGAACTTCTTGGGGAGCTCTTTGTGTTCACGGTTGCAGGAACTGCACTTATTTTTGAAGTCCAAAGAAGTTCAAGATCAGAAGCAAGAAAGGAAGAGCTGCGTAAACAGGAATTACAGGTATGCATTGTTACCATTCTAGAAAACAGTAGAGCCATTTTTGGATCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

10.01

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 6 - 117 1.5e-42 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 13, 102
AgsI TTSAA 3 cut(s) 180, 290, 306
AjnI CCWGG 2 cut(s) 95, 126
AluBI AGCT 4 cut(s) 218, 227, 250, 331
AluI AGCT 4 cut(s) 218, 227, 250, 331
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 275
ApeKI GCWGC 3 cut(s) 227, 230, 331
Asp700I GAANNNNTTC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 214, 217, 318
BciT130I CCWGG 2 cut(s) 97, 128
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 3 cut(s) 228, 231, 332
BlsI GCNGC 3 cut(s) 229, 232, 333
Bme1390I CCNGG 2 cut(s) 97, 128
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 97, 128
BpuEI CTTGAG 1 cut(s) 56
Bsa29I ATCGAT 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 95, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 102
Bse3DI GCAATG 2 cut(s) 57, 120
BseBI CCWGG 2 cut(s) 97, 128
BseCI ATCGAT 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 95, 126
BseLI CCNNNNNNNGG 2 cut(s) 13, 102
BseMI GCAATG 2 cut(s) 57, 120
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 3 cut(s) 214, 217, 318
BsgI GTGCAG 1 cut(s) 261
BshVI ATCGAT 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 13, 102
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 3, 308, 395
BspACI CCGC 1 cut(s) 14
BspDI ATCGAT 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 57, 120
BssECI CCNNGG 2 cut(s) 95, 126
BssMI GATC 3 cut(s) 3, 308, 395
Bst2UI CCWGG 2 cut(s) 97, 128
Bst4CI ACNGT 2 cut(s) 265, 380
Bst6I CTCTTC 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 85, 89
BstKTI GATC 3 cut(s) 6, 311, 398
BstMBI GATC 3 cut(s) 3, 308, 395
BstMWI GCNNNNNNNGC 2 cut(s) 224, 275
BstNI CCWGG 2 cut(s) 97, 128
BstSCI CCNGG 2 cut(s) 95, 126
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 214, 217, 318
Bsu15I ATCGAT 1 cut(s) 139
BsuTUI ATCGAT 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 2 cut(s) 85, 89
CaiI CAGNNNCTG 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 139
CviJI RGCY 7 cut(s) 83, 87, 218, 227, 250, 331, 386
CviKI_1 RGCY 7 cut(s) 83, 87, 218, 227, 250, 331, 386
DpnI GATC 3 cut(s) 5, 310, 397
DpnII GATC 3 cut(s) 3, 308, 395
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 95, 126
EcoT22I ATGCAT 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 252
FaiI YATR 3 cut(s) 171, 355, 400
Fnu4HI GCNGC 3 cut(s) 228, 231, 332
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 228, 231, 332
FspBI CTAG 1 cut(s) 371
GluI GCNGC 3 cut(s) 228, 231, 332
Hpy166II GTNNAC 3 cut(s) 200, 261, 338
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 73, 306, 371
Hpy8I GTNNAC 3 cut(s) 200, 261, 338
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 265, 380
HpyCH4V TGCA 7 cut(s) 51, 91, 157, 233, 269, 278, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 275
Kzo9I GATC 3 cut(s) 3, 308, 395
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 3 cut(s) 214, 217, 318
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 361
MalI GATC 3 cut(s) 5, 310, 397
MboI GATC 3 cut(s) 3, 308, 395
MboII GAAGA 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 344
MnlI CCTC 3 cut(s) 73, 80, 202
Mph1103I ATGCAT 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 97, 128
MvaI CCWGG 2 cut(s) 97, 128
MwoI GCNNNNNNNGC 2 cut(s) 224, 275
NdeII GATC 3 cut(s) 3, 308, 395
NlaIV GGNNCC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 229, 232, 333
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 95, 126
PspGI CCWGG 2 cut(s) 95, 126
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 3 cut(s) 228, 231, 332
Sau3AI GATC 3 cut(s) 3, 308, 395
ScrFI CCNGG 2 cut(s) 97, 128
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 47, 101, 220, 229, 252, 333, 354
SfcI CTRYAG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 344
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 95, 126
TaaI ACNGT 2 cut(s) 265, 380
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 344
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 207
TseI GCWGC 3 cut(s) 227, 230, 331
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 1 cut(s) 371
Zsp2I ATGCAT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.