Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8103552.1

Orthogroup ID

OG0004304

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 522

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8103552.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

gcaaaccatcaaatcaccacgaaaatgcaaagacgcctctatagtcacgcaactgatgtcgagattcgtcccttgaatgaggagaaggctgtgcaggctgctgtggacctcatcggggagctctttgtcttcacggtaatttttgaacctagctattcgtttgttgaacttctcaaagacatcttttcactgtttacatatacggtattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPA3

Protein Analysis

70

Amino Acids

8.14

Weight (kDa)

5.14

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28510
fragaria_vesca	FvH4_3g08400 FvH4_6g26840
malus_domestica	MD05G1308400.v1.1 MD10G1287400.v1.1
prunus_persica	Prupe.3G127400_v2.0.a1 Prupe.3G127400_v2.0.a1 Prupe.4G054400_v2.0.a1 Prupe.4G054400_v2.0.a1
pyrus_communis	pycom05g28510 pycom10g24040
rosa_chinensis	RchiOBHm_Chr2g0128211 RchiOBHm_Chr5g0009501
rosa_laevigata	RLG00000031667
rosa_multiflora	Rmu_co8103552.1_g000001 Rmu_sc0032999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066630 Rroxscaffold_1G00067340 Rroxscaffold_2G00115490 Rroxscaffold_2G00115950
rosa_rugosa	Rorug04G0443700 Rorug04G0443700
rosa_samantha	Rh2AG331300 Rh2BG339500 Rh2CG317200 Rh2DG356400 Rh5AG074700 Rh5BG070500 Rh5CG082900 Rh5DG070700
rosa_wichuraiana	Rw2G026800 Rw5G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	76, 146, 167
AluBI	AGCT	2 cut(s)	121, 153
AluI	AGCT	2 cut(s)	121, 153
Alw21I	GWGCWC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	34
Bst4CI	ACNGT	3 cut(s)	136, 192, 205
BstACI	GRCGYC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	42
CviJI	RGCY	4 cut(s)	89, 98, 121, 153
CviKI_1	RGCY	4 cut(s)	89, 98, 121, 153
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	123
FaiI	YATR	3 cut(s)	42, 199, 201
FaqI	GGGAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	106, 195
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	106, 195
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	3 cut(s)	136, 192, 205
HpyCH4V	TGCA	2 cut(s)	28, 94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	3 cut(s)	47, 73, 119
MslI	CAYNNNNRTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	4 cut(s)	111, 123, 151, 155
SfcI	CTRYAG	1 cut(s)	40
SgeI	CNNG	8 cut(s)	31, 59, 73, 85, 107, 127, 145, 162
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	136, 192, 205
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	106
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.