FvH4_6g26840

Optic atrophy 3 protein (OPA3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004304
Physical Location & Seq
Forward (+)
20524436 .. 20528042
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26840.t1

Sequence Viewer

Length: 435 bp
ATGATCCTACCAGCAGTGAAGTTAGGAACCCTTGCCCTGAAAACCTTGTGCAAACCCATTGCCAGTCGCCTCAAGAAGGAGGCTGGCTTGCACCCCAGGTTCAGGCACTTCATCATCAACATTGCCCAGGCGAATCATCGATTTACAACAAATGTGCAAAGACGGATATATGGTCATTCAACTGATGTTGCAATTCGTCCACTTAATGAGGAGAAAGCCGTCCAAACTGCTGCAGAACTTCTTGGGGAGCTGTTTGTGTTCACAGCGATGAAACAAAGAGATGAAGAGCTAGAAAGAGAAGTTCAGCTGCTTAAGAAGAAGCTTGAAGAGCTGGAACAGCTCGCAAAAGGTAGAGGGATTGGTGGCCTTTTCAGTTTCAGGCATGCTCAAGCTACTGATAATGGAAAGGGAAATCCCAGCTTGACCCCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

145

Amino Acids

16.18

Weight (kDa)

9.81

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 6 - 89 1.3e-29 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 76, 102
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 180, 326
AjnI CCWGG 2 cut(s) 95, 126
AluBI AGCT 8 cut(s) 250, 289, 307, 322, 331, 340, 392, 420
AluI AGCT 8 cut(s) 250, 289, 307, 322, 331, 340, 392, 420
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 230, 307
BbvI GCAGC 2 cut(s) 217, 294
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 97, 128
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 311
BisI GCNGC 2 cut(s) 231, 308
BlsI GCNGC 2 cut(s) 232, 309
Bme1390I CCNGG 2 cut(s) 97, 128
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 97, 128
BpuEI CTTGAG 2 cut(s) 56, 372
Bsa29I ATCGAT 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 95, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 102
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 2 cut(s) 57, 120
BseBI CCWGG 2 cut(s) 97, 128
BseCI ATCGAT 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 95, 126
BseLI CCNNNNNNNGG 2 cut(s) 76, 102
BseMI GCAATG 2 cut(s) 57, 120
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 217, 294
BseYI CCCAGC 1 cut(s) 416
BshFI GGCC 1 cut(s) 366
BshVI ATCGAT 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 76, 102
BsnI GGCC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 366
BspDI ATCGAT 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 235
BspQI GCTCTTC 2 cut(s) 279, 321
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 2 cut(s) 57, 120
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 95, 126
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 97, 128
Bst6I CTCTTC 2 cut(s) 279, 321
BstAFI CTTAAG 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 85, 89, 342, 384
BstENI CCTNNNNNAGG 1 cut(s) 74
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 328, 337
BstNI CCWGG 2 cut(s) 97, 128
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 95, 126
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 217, 294
Bsu15I ATCGAT 1 cut(s) 139
BsuRI GGCC 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 4 cut(s) 85, 89, 342, 384
ClaI ATCGAT 1 cut(s) 139
CviAII CATG 1 cut(s) 383
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 279, 321
EarI CTCTTC 2 cut(s) 279, 321
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 95, 126
FaeI CATG 1 cut(s) 386
FaiI YATR 3 cut(s) 169, 171, 384
FatI CATG 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 231, 308
Fsp4HI GCNGC 2 cut(s) 231, 308
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 231, 308
GsaI CCCAGC 1 cut(s) 420
HaeIII GGCC 1 cut(s) 366
Hin1II CATG 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 200, 261
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 2 cut(s) 200, 261
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 5 cut(s) 51, 91, 157, 191, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 337
Hsp92II CATG 1 cut(s) 386
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 2 cut(s) 279, 321
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 217, 294
MaeI CTAG 1 cut(s) 290
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 296, 328, 338
MluCI AATT 1 cut(s) 192
MnlI CCTC 4 cut(s) 73, 80, 202, 347
MseI TTAA 2 cut(s) 204, 312
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 307
MspCI CTTAAG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 97, 128
MvaI CCWGG 2 cut(s) 97, 128
MwoI GCNNNNNNNGC 2 cut(s) 328, 337
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PciSI GCTCTTC 2 cut(s) 279, 321
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 232, 309
Psp6I CCWGG 2 cut(s) 95, 126
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 2 cut(s) 95, 126
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 2 cut(s) 279, 321
SaqAI TTAA 2 cut(s) 204, 312
SatI GCNGC 2 cut(s) 231, 308
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 97, 128
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 71, 311, 387
SmoI CTYRAG 3 cut(s) 71, 311, 387
SphI GCATGC 1 cut(s) 386
Sse9I AATT 1 cut(s) 192
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 95, 126
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 204, 312
Tru9I TTAA 2 cut(s) 204, 312
TscAI CASTG 1 cut(s) 21
TseI GCWGC 2 cut(s) 230, 307
TspDTI ATGAA 3 cut(s) 100, 284, 297
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 74
XceI RCATGY 1 cut(s) 386
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.