Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004304

Physical Location & Seq

Genomic Coordinates Forward (+)

2621815 .. 2625107

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTACTACCGCTCCTGAAGCTTGGGACTTTGCTCCTAAAAACTCTGAGCAAACCCGTAGCCGCCAGGCTCAAACAGCAAGCTGGGTTGCACCCAAGGTTCCGCCAGATCATCGTCAGCATGGCACAGGCAAACCATCAAGTCACCACAAGAATGCAAAGACGGCTCTATAGTCATGCAACTGATGTTGAGATTCGCCCTTTGAATGAGGAGAAGGCTGTGCAGGCTGCTGTGGACCTTATTGGGGAGCTCTTTGTTTTCTCGGTTGCAGTAGCTGTTTTGATCTTTGAAGTGCAAAGAAATTCTAGATCAGAAGCCAGAAAGGAGGAATTACGCAAGCAAGAACTGGAGACAATGAAGCAAAGAGATGAAGCCTTATCAAGAGAAGTAGTACTTCTTAGGGCAAAATTTGAAGAACTGGAGAAGCTTGCGAAGGGACGAGGACTTAGTGGTATCATCAACTTCAAGCGGGCTGAAACAGAAGGTGCAAAGACAGAAAAACCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPA3

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

10.04

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28510
fragaria_vesca	FvH4_3g08400 FvH4_6g26840
malus_domestica	MD05G1308400.v1.1 MD10G1287400.v1.1
prunus_persica	Prupe.3G127400_v2.0.a1 Prupe.3G127400_v2.0.a1 Prupe.4G054400_v2.0.a1 Prupe.4G054400_v2.0.a1
pyrus_communis	pycom05g28510 pycom10g24040
rosa_chinensis	RchiOBHm_Chr2g0128211 RchiOBHm_Chr5g0009501
rosa_laevigata	RLG00000031667
rosa_multiflora	Rmu_co8103552.1_g000001 Rmu_sc0032999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066630 Rroxscaffold_1G00067340 Rroxscaffold_2G00115490 Rroxscaffold_2G00115950
rosa_rugosa	Rorug04G0443700 Rorug04G0443700
rosa_samantha	Rh2AG331300 Rh2BG339500 Rh2CG317200 Rh2DG356400 Rh5AG074700 Rh5BG070500 Rh5CG082900 Rh5DG070700
rosa_wichuraiana	Rw2G026800 Rw5G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	13
AciI	CCGC	4 cut(s)	11, 63, 103, 469
AcsI	RAATTY	2 cut(s)	301, 407
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	6, 393
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	205, 290, 413, 466
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	5 cut(s)	22, 83, 250, 275, 427
AluI	AGCT	5 cut(s)	22, 83, 250, 275, 427
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	301, 407
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	169
BisI	GCNGC	2 cut(s)	63, 228
BlsI	GCNGC	2 cut(s)	64, 229
BmcAI	AGTACT	1 cut(s)	393
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	368, 440
BsaJI	CCNNGG	1 cut(s)	95
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	351, 423
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	351, 423
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	2 cut(s)	40, 450
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	2 cut(s)	40, 450
BsmI	GAATGC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	108, 282, 308
BspACI	CCGC	4 cut(s)	11, 63, 103, 469
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	351, 423
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	108, 282, 308
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	67
BstC8I	GCNNGC	5 cut(s)	81, 225, 338, 429, 471
BstDEI	CTNAG	3 cut(s)	47, 398, 446
BstKTI	GATC	3 cut(s)	111, 285, 311
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	108, 282, 308
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 76, 163, 224
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	214
Cac8I	GCNNGC	5 cut(s)	81, 225, 338, 429, 471
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	5, 392
CviAII	CATG	2 cut(s)	121, 176
CviQI	GTAC	2 cut(s)	5, 392
DdeI	CTNAG	3 cut(s)	47, 398, 446
DpnI	GATC	3 cut(s)	110, 284, 310
DpnII	GATC	3 cut(s)	108, 282, 308
EciI	GGCGGA	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	124, 179
FaiI	YATR	3 cut(s)	122, 171, 177
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	40, 450
FatI	CATG	2 cut(s)	120, 175
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	63, 228
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	63, 228
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	2 cut(s)	63, 228
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	2 cut(s)	368, 440
Hin1II	CATG	2 cut(s)	124, 179
HindIII	AAGCTT	2 cut(s)	20, 425
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	48, 313
Hpy188III	TCNNGA	3 cut(s)	16, 306, 381
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	208, 427, 476
HpyCH4V	TGCA	7 cut(s)	91, 157, 179, 223, 269, 295, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 76, 163, 224
HpyF3I	CTNAG	3 cut(s)	47, 398, 446
Hsp92II	CATG	2 cut(s)	124, 179
Kzo9I	GATC	3 cut(s)	108, 282, 308
LmnI	GCTCC	3 cut(s)	18, 39, 247
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	110, 284, 310
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	3 cut(s)	108, 282, 308
MboII	GAAGA	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	301, 329, 407
MnlI	CCTC	3 cut(s)	202, 319, 434
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	4 cut(s)	19, 76, 163, 224
NdeII	GATC	3 cut(s)	108, 282, 308
NlaIII	CATG	2 cut(s)	124, 179
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	142
PctI	GAATGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	64, 229
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	6, 393
RsaNI	GTAC	2 cut(s)	5, 392
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	252
SatI	GCNGC	2 cut(s)	63, 228
Sau3AI	GATC	3 cut(s)	108, 282, 308
Sau96I	GGNCC	1 cut(s)	235
ScaI	AGTACT	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	24, 85, 101, 240, 252, 277, 429, 487
SfcI	CTRYAG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	301, 329, 407
SsiI	CCGC	4 cut(s)	11, 63, 103, 469
SspMI	CTAG	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	95
TasI	AATT	3 cut(s)	301, 329, 407
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	371, 384
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	301, 407
XbaI	TCTAGA	1 cut(s)	305
XspI	CTAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.