Rh2DG356400

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004304
Physical Location & Seq
Forward (+)
50165427 .. 50170270
4844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG356400.1

Sequence Viewer

Length: 441 bp
ATGCTTAAATTTTGTTTTGTCATTTGGACATTGAATCAGGCAAATCATCGATTTACAACAAATGTGCAAAGACGGATTTATGGTCATTCAACTGATGTTGCTATTCGTCCACTGAACGAGGAGAAAGCTGTCCAAGCTGCTGCAGAACTTCTTGGGGAGCTCTTTGTGTTCACGGTTGCAGGGACTGCACTTATTTTTGAAGTCCAAAGAAGTTCAAGATCAGAAGCAAGAAAGGAGGAGCTGCGTAAACAGGAGTTACAGGCAATGAAACAAAGAGATGAAGAGCTAGAAAGAGAAGTTCAGCTGCTTAAGAAGAAGCTTGAAGAGCTGGAACAGCTTGCAAAAGGTAGAGGAATTGCTGGCCTTTTCAGTTTCAGGCATGCTCAAGCTACTGATAATGGAAACCGAAATCCCAGCTTGACCCCAGAAAAGATCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

146

Amino Acids

16.77

Weight (kDa)

9.16

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 7 - 96 8.3e-27 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 5 cut(s) 34, 90, 200, 216, 323
Alw21I GWGCWC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 4 cut(s) 137, 140, 241, 304
ApoI RAATTY 1 cut(s) 8
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 4 cut(s) 124, 127, 228, 291
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 4 cut(s) 138, 141, 242, 305
BlsI GCNGC 4 cut(s) 139, 142, 243, 306
BpuEI CTTGAG 1 cut(s) 369
Bsa29I ATCGAT 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 270
BseCI ATCGAT 1 cut(s) 49
BseMI GCAATG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 134, 251
BseXI GCAGC 4 cut(s) 124, 127, 228, 291
BseYI CCCAGC 1 cut(s) 413
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 363
BshVI ATCGAT 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 218, 432
BspANI GGCC 1 cut(s) 363
BspDI ATCGAT 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 145
BspQI GCTCTTC 2 cut(s) 276, 318
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 270
BssMI GATC 2 cut(s) 218, 432
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 276, 318
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 339, 361, 381
BstKTI GATC 2 cut(s) 221, 435
BstMBI GATC 2 cut(s) 218, 432
BstMWI GCNNNNNNNGC 4 cut(s) 134, 185, 325, 334
BstNSI RCATGY 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 124, 127, 228, 291
Bsu15I ATCGAT 1 cut(s) 49
BsuRI GGCC 1 cut(s) 363
BsuTUI ATCGAT 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 339, 361, 381
CaiI CAGNNNCTG 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 49
CviAII CATG 1 cut(s) 380
DpnI GATC 2 cut(s) 220, 434
DpnII GATC 2 cut(s) 218, 432
Eam1104I CTCTTC 2 cut(s) 276, 318
EarI CTCTTC 2 cut(s) 276, 318
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 383
FaiI YATR 2 cut(s) 81, 381
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 379
Fnu4HI GCNGC 4 cut(s) 138, 141, 242, 305
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 138, 141, 242, 305
FspBI CTAG 1 cut(s) 287
GluI GCNGC 4 cut(s) 138, 141, 242, 305
GsaI CCCAGC 1 cut(s) 417
HaeIII GGCC 1 cut(s) 363
Hin1II CATG 1 cut(s) 383
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 110, 171, 248
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 3 cut(s) 110, 171, 248
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 5 cut(s) 67, 143, 179, 188, 341
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 185, 325, 334
Hsp92II CATG 1 cut(s) 383
Kzo9I GATC 2 cut(s) 218, 432
LguI GCTCTTC 2 cut(s) 276, 318
LmnI GCTCC 2 cut(s) 157, 238
LpnPI CCDG 8 cut(s) 23, 165, 236, 245, 314, 345, 361, 427
Lsp1109I GCAGC 4 cut(s) 124, 127, 228, 291
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 255
MalI GATC 2 cut(s) 220, 434
MboI GATC 2 cut(s) 218, 432
MboII GAAGA 3 cut(s) 293, 325, 335
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 2 cut(s) 8, 354
MnlI CCTC 3 cut(s) 112, 229, 344
MseI TTAA 2 cut(s) 6, 309
MspA1I CMGCKG 1 cut(s) 304
MspCI CTTAAG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 134, 185, 325, 334
NdeII GATC 2 cut(s) 218, 432
NlaIII CATG 1 cut(s) 383
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PciSI GCTCTTC 2 cut(s) 276, 318
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 4 cut(s) 139, 142, 243, 306
Psp124BI GAGCTC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 304
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 2 cut(s) 276, 318
SaqAI TTAA 2 cut(s) 6, 309
SatI GCNGC 4 cut(s) 138, 141, 242, 305
Sau3AI GATC 2 cut(s) 218, 432
SduI GDGCHC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 308, 384
SmoI CTYRAG 2 cut(s) 308, 384
SphI GCATGC 1 cut(s) 383
Sse9I AATT 2 cut(s) 8, 354
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 162
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 49
TasI AATT 2 cut(s) 8, 354
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 6, 309
Tru9I TTAA 2 cut(s) 6, 309
TscAI CASTG 1 cut(s) 117
TseI GCWGC 4 cut(s) 137, 140, 241, 304
TspDTI ATGAA 2 cut(s) 281, 294
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 308
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 383
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.