Rmu_sc0032999.1_g000001

OPA3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032999.1
OG0004304
Physical Location & Seq
Reverse (-)
1 .. 927
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032999.1_g000001.1.cds

Sequence Viewer

Length: 219 bp
atgagcaaacctgtagccgccaggcttaaacaggcagctgggaagcaccccaggttccgccaaatcatcgtcaacatggctcaggcaaaccatcaaatcaccacgaaaatgcaaagacgcctctatagtcacgcaactgatgtcgagattcgtcccttgaatgaggagaaggctgtgcaggctgctgtggacctcatcggggagctctttgtcttcacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

73

Amino Acids

8.28

Weight (kDa)

10.27

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 58
AcyI GRCGYC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 20, 50
AluBI AGCT 2 cut(s) 38, 205
AluI AGCT 2 cut(s) 38, 205
Alw21I GWGCWC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 35, 182
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 47, 169
BccI CCATC 1 cut(s) 99
BciT130I CCWGG 2 cut(s) 22, 52
BfmI CTRYAG 2 cut(s) 12, 124
BisI GCNGC 3 cut(s) 18, 36, 183
BlsI GCNGC 3 cut(s) 19, 37, 184
Bme1390I CCNGG 2 cut(s) 22, 52
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 22, 52
BpiI GAAGAC 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 22, 52
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 47, 169
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 207
BspACI CCGC 2 cut(s) 18, 58
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 22, 52
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 22, 52
BstSCI CCNGG 2 cut(s) 20, 50
BstSFI CTRYAG 2 cut(s) 12, 124
BstV1I GCAGC 2 cut(s) 47, 169
BstV2I GAAGAC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 126
CviAII CATG 1 cut(s) 76
CviJI RGCY 7 cut(s) 17, 25, 38, 80, 173, 182, 205
CviKI_1 RGCY 7 cut(s) 17, 25, 38, 80, 173, 182, 205
DdeI CTNAG 1 cut(s) 81
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 20, 50
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 1 cut(s) 79
FaiI YATR 2 cut(s) 77, 126
FaqI GGGAC 1 cut(s) 138
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 18, 36, 183
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 18, 36, 183
GluI GCNGC 3 cut(s) 18, 36, 183
GsaI CCCAGC 1 cut(s) 42
HgaI GACGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 1 cut(s) 79
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 148
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 73, 190
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 73, 190
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 112, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 1 cut(s) 79
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 9 cut(s) 7, 17, 24, 24, 34, 37, 64, 68, 164
Lsp1109I GCAGC 2 cut(s) 47, 169
MaeIII GTNAC 1 cut(s) 128
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 207
MnlI CCTC 3 cut(s) 131, 157, 203
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 22, 52
MvaI CCWGG 2 cut(s) 22, 52
MwoI GCNNNNNNNGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 3 cut(s) 19, 37, 184
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 20, 50
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 2 cut(s) 20, 50
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 18, 36, 183
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 22, 52
SduI GDGCHC 1 cut(s) 207
SetI ASST 5 cut(s) 13, 40, 56, 195, 207
SfcI CTRYAG 2 cut(s) 12, 124
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 107
SsiI CCGC 2 cut(s) 18, 58
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 20, 50
TaqI TCGA 1 cut(s) 144
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 35, 182
Tsp45I GTSAC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.