Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004304

Physical Location & Seq

Genomic Coordinates Reverse (-)

11901761 .. 11906873

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G127400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTCCTTCCAGCGGTAAAGTTAGCAACCCTTGCCCTCAAAACCATCTCCAAACCCATTGCTAATCGGCTCAAGCGAGAGGCTGGCTTGCACCCGCGATTTAGGCAGTTCATCGTTAACATTGCCCAGGCAAATCATCGATTTACAACAAATGTGCAAAGACGGATTTATGGTCATGCAACTGATGTTGCAATACGCCCACTGAACGAGGAGAAAGCTGTCCAAGCTGCTGCAGATCTTCTCGGGGAGCTCTTTGTGTTCACGGTTGGAGGCGCTGCAGTTATTTTTGAAGTGCAAAGAAGCTCAAGATCAGAAGCAAGAAAGGAGGAGCTACGTAGACAGGAATTAGAGGCAATGAGACAAAGAGATGAAGATTTAGCAAGAGAAGTTGAGCTGCTGAAGAAAAAACTTGAAGAGCTGGAACAACTTGCCAAAGGACGAGGAATTGCCGGATATTTCAACTTCAGGAATGCTCAAGGCCCTGAGAATGAAAAGGCTAAAATCCCATTTGATCACAGCAAAAATGAAGTACAGCACGTAGTATTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPA3

Protein Analysis

184

Amino Acids

20.8

Weight (kDa)

9.81

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28510
fragaria_vesca	FvH4_3g08400 FvH4_6g26840
malus_domestica	MD05G1308400.v1.1 MD10G1287400.v1.1
prunus_persica	Prupe.3G127400_v2.0.a1 Prupe.3G127400_v2.0.a1 Prupe.4G054400_v2.0.a1 Prupe.4G054400_v2.0.a1
pyrus_communis	pycom05g28510 pycom10g24040
rosa_chinensis	RchiOBHm_Chr2g0128211 RchiOBHm_Chr5g0009501
rosa_laevigata	RLG00000031667
rosa_multiflora	Rmu_co8103552.1_g000001 Rmu_sc0032999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066630 Rroxscaffold_1G00067340 Rroxscaffold_2G00115490 Rroxscaffold_2G00115950
rosa_rugosa	Rorug04G0443700 Rorug04G0443700
rosa_samantha	Rh2AG331300 Rh2BG339500 Rh2CG317200 Rh2DG356400 Rh5AG074700 Rh5BG070500 Rh5CG082900 Rh5DG070700
rosa_wichuraiana	Rw2G026800 Rw5G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	1 cut(s)	97
AciI	CCGC	2 cut(s)	14, 95
AcuI	CTGAAG	2 cut(s)	419, 448
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	290, 413, 460
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	7 cut(s)	218, 227, 250, 303, 331, 394, 418
AluI	AGCT	7 cut(s)	218, 227, 250, 303, 331, 394, 418
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	4 cut(s)	227, 230, 275, 394
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	4, 479
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	214, 217, 262, 381
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	2 cut(s)	231, 276
BfoI	RGCGCY	1 cut(s)	276
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	4 cut(s)	228, 231, 276, 395
BlsI	GCNGC	4 cut(s)	229, 232, 277, 396
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	4, 479
BmrFI	CCNGG	1 cut(s)	128
BpuEI	CTTGAG	3 cut(s)	56, 289, 459
Bsa29I	ATCGAT	1 cut(s)	139
BsaAI	YACGTR	2 cut(s)	335, 538
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse3DI	GCAATG	3 cut(s)	57, 120, 360
BseBI	CCWGG	1 cut(s)	128
BseCI	ATCGAT	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMI	GCAATG	3 cut(s)	57, 120, 360
BseMII	CTCAG	1 cut(s)	474
BseRI	GAGGAG	2 cut(s)	224, 341
BseXI	GCAGC	4 cut(s)	214, 217, 262, 381
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	480
BshVI	ATCGAT	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	235, 308, 511
BspACI	CCGC	2 cut(s)	14, 95
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	475
BspDI	ATCGAT	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	97
BspMAI	CTGCAG	2 cut(s)	235, 280
BspQI	GCTCTTC	1 cut(s)	408
BsrDI	GCAATG	3 cut(s)	57, 120, 360
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	3 cut(s)	235, 308, 511
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	265, 549
Bst6I	CTCTTC	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	2 cut(s)	335, 538
BstC8I	GCNNGC	2 cut(s)	85, 89
BstDEI	CTNAG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	238, 311, 514
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	3 cut(s)	235, 308, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 103, 224
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	231, 276
BstSNI	TACGTA	1 cut(s)	335
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	4 cut(s)	214, 217, 262, 381
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	85, 89
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	4, 479
ClaI	ATCGAT	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	1 cut(s)	176
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	237, 310, 513
DpnII	GATC	3 cut(s)	235, 308, 511
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	250
Eco105I	TACGTA	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	419, 448
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	179
FaiI	YATR	2 cut(s)	171, 177
FatI	CATG	1 cut(s)	175
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	228, 231, 276, 395
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	4 cut(s)	228, 231, 276, 395
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	228, 231, 276, 395
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	450
Hpy166II	GTNNAC	3 cut(s)	118, 261, 338
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	306, 466
Hpy8I	GTNNAC	3 cut(s)	118, 261, 338
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	265, 549
HpyCH4IV	ACGT	2 cut(s)	334, 537
HpyCH4V	TGCA	7 cut(s)	91, 157, 179, 191, 233, 278, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 103, 224
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	334, 537
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	511
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	235, 308, 511
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	247, 328
LpnPI	CCDG	9 cut(s)	24, 69, 113, 140, 326, 404, 451, 463, 495
Lsp1109I	GCAGC	4 cut(s)	214, 217, 262, 381
MaeII	ACGT	2 cut(s)	334, 537
MalI	GATC	3 cut(s)	237, 310, 513
MboI	GATC	3 cut(s)	235, 308, 511
MboII	GAAGA	4 cut(s)	230, 383, 412, 425
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	344, 444
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	47, 73, 202, 263, 319, 343, 434
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	32, 103, 224
NdeII	GATC	3 cut(s)	235, 308, 511
NlaIII	CATG	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PctI	GAATGC	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	229, 232, 277, 396
Ppu21I	YACGTR	2 cut(s)	335, 538
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	4, 479
PstI	CTGCAG	2 cut(s)	235, 280
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	4 cut(s)	228, 231, 276, 395
Sau3AI	GATC	3 cut(s)	235, 308, 511
Sau96I	GGNCC	2 cut(s)	4, 479
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	9 cut(s)	220, 229, 252, 305, 333, 337, 396, 420, 540
SfcI	CTRYAG	2 cut(s)	231, 276
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	3 cut(s)	71, 304, 474
SmoI	CTYRAG	3 cut(s)	71, 304, 474
SnaBI	TACGTA	1 cut(s)	335
Sse9I	AATT	2 cut(s)	344, 444
SsiI	CCGC	2 cut(s)	14, 95
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	265, 549
TaiI	ACGT	2 cut(s)	337, 540
TaqI	TCGA	1 cut(s)	139
TasI	AATT	2 cut(s)	344, 444
TatI	WGTACW	1 cut(s)	529
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	4 cut(s)	227, 230, 275, 394
TspDTI	ATGAA	4 cut(s)	100, 384, 504, 540
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.