Rh5BG070500

OPA3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004304
Physical Location & Seq
Forward (+)
5725702 .. 5728779
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG070500.1

Sequence Viewer

Length: 360 bp
ATGCAAAGACGCATCTATAGTCACGCAACTGATGTCGAGATTCGTCCCTTGAATGAGGAGAAGGCTGTGCAGGCTGCTGTGGACCTCATCGGGGAGCTCTTTGTCTTCACGGTTGCAGGAGTTGCTCTGATCTTTGAAGTTCAAAGAAGTGCCAGATCAGAAGCCAGAAAGGAGGAAGCACGAAAGCAAGAACTGGAGACAATGAAGCAAAGAGATGAAGAGTTATCTAGAGAAGTGGAGCTTCTAAGGAGCAAATATGAAGAACTGGAGAAGCTTGCTAAGGGACAAGGACTCAGTGGTATTTTTAATTTCAAGCGTGTTGCCGATACAGAAGGTGCAAAGTCAGTAAAGCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

119

Amino Acids

13.54

Weight (kDa)

5.97

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 1 - 75 3.5e-22 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 4 cut(s) 52, 137, 143, 313
AluBI AGCT 4 cut(s) 97, 241, 274, 356
AluI AGCT 4 cut(s) 97, 241, 274, 356
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 2 cut(s) 215, 287
Bpu10I CCTNAGC 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 198, 270
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 307
BseNI ACTGG 2 cut(s) 198, 270
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 99
BslFI GGGAC 2 cut(s) 30, 297
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 30, 297
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 129, 155
BspCNI CTCAG 1 cut(s) 306
BsrI ACTGG 2 cut(s) 198, 270
BssMI GATC 2 cut(s) 129, 155
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 72, 276, 354
BstDEI CTNAG 3 cut(s) 245, 279, 293
BstKTI GATC 2 cut(s) 132, 158
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 129, 155
BstMWI GCNNNNNNNGC 2 cut(s) 71, 122
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 72, 276, 354
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 18
CviJI RGCY 8 cut(s) 65, 74, 97, 164, 241, 274, 352, 356
CviKI_1 RGCY 8 cut(s) 65, 74, 97, 164, 241, 274, 352, 356
DdeI CTNAG 3 cut(s) 245, 279, 293
DpnI GATC 2 cut(s) 131, 157
DpnII GATC 2 cut(s) 129, 155
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
FaiI YATR 2 cut(s) 18, 258
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 2 cut(s) 30, 297
Fnu4HI GCNGC 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 2 cut(s) 215, 287
HgaI GACGC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 2 cut(s) 40, 291
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 129, 160
Hpy188III TCNNGA 2 cut(s) 37, 228
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 55, 326
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 4, 70, 116, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 122
HpyF3I CTNAG 3 cut(s) 245, 279, 293
Kzo9I GATC 2 cut(s) 129, 155
LmnI GCTCC 3 cut(s) 94, 238, 249
LpnPI CCDG 6 cut(s) 56, 102, 166, 178, 179, 251
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 131, 157
MboI GATC 2 cut(s) 129, 155
MboII GAAGA 3 cut(s) 97, 230, 272
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 307
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 3 cut(s) 49, 95, 166
MseI TTAA 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 71, 122
NdeII GATC 2 cut(s) 129, 155
NmuCI GTSAC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 82
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 129, 155
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 285
SduI GDGCHC 1 cut(s) 99
SetI ASST 6 cut(s) 87, 99, 243, 276, 337, 358
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 82
Sse9I AATT 1 cut(s) 307
SspMI CTAG 1 cut(s) 228
SstI GAGCTC 1 cut(s) 99
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 307
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 218, 231, 273
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 227
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.