Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Forward (+)

11985650 .. 11990520

Gene Structure 4871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGCGAGAAGAGAAGGAGAAGTGACGGAGACCCTTCTGAAAAAGTCGACGGAGAATCGCGGAGAAGATCGGGATGGGTTAGGGATGAAGGAGAAGGTTTGGAGGGAATCTAAAAAGCTATGGGTTGTGGCTGGGCCGGCGATCTTTACGAGGTTCTCCACGTCCGGACTATCTTTGATAAGTCAAGCTTTCATTGGCCATCTTGGCTCTACCGAGTTGGCCGCTTACTCCATCACTCTCACCGTTCTCCTCCGTTTTAGTAATGGTATCTTGTTAGGCATGGCTAGTGCGCTAGAAACACTATGTGGTCAAGCCTATGGAGCAAAACAATATCATATGCTTGGGATCTACCTCCAAAGATCATGGATCGTCCTCACAGGCTGTACCATTTGCCTTATGCCCATCTACATCTTTGCAGGCCCTATTCTCTTGGCTTTAGGTCAAGAGGAACGCCTTGTTCGTGTGGCTCGGATCATAGCTCTATGGGTCATAGGCATCAACATCTCCTTTGTGCCTTCCTTCACTTGCCAAATGTTCCTCCAAGCTCAGAGTAAGAACAAGATCATCGCCTACGTTGCTGCTGTTTCGTTAGGAGTCCATGTCTTCTTGTCGTGGCTTCTAGTGGTTCATTTTGATTTCGGGATCGCTGGTGCCATGACCTCTTCGCTCGTAGCACATTGGTTGCCTAACATTGCGCAGGTTTTATTTGTCACATGCGGTGGATGTACGGAAACGTGGAGAGGATTCTCTTGGTTGGCTTTCAAGGATCTTTGGCCCGTTTTTAAACTATCTGTATCTTCCGGTGGCATGATTTGCTTGGAGCTATGGTACAACTCGATCTTGATTCTGCTCACGGGAAACTTGAAAAACGCTGAGGTTGCTCTTAACGCACTTGCAATCTGCATCAATATAAATGCACTGGAGATGATGGTAGCCTTCGGCTTCATGGCAGCAGCAAGTGTAAGAGTTTCAAACGAGATCGGGAGTGGGAATTCTAATGGAGCCAAATTTGCAACAATGGTTGTGGTTTCGACATCACTTTCGATAGGAATCATCTTCTTCTTTATCTTCCTGTTTTTAAGAGAAAGGGTTTCATACATTTTTACAACAAGTGAAGCTGTTGCCACACAAGTAGCCGATCTTTCTCCACTCTTGGCCTTCTCCATTCTCTTGAACAGTATTCAACCAGTTCTCTCTGGAGTTGCTGTTGGAGCGGGATGGCAGAAATATGTTACGGTCGTTAACCTTGCTTGCTATTACCTTGTTGGAATTCCTTCCGGTCTTTTTCTTGGCTATGTCGTTGGTTTACAAGTCAAAGGTGTTTGGTTAGGAATGATTTTCGGAATCTTCGTTCAGACTTGCGTGCTTACAGTAATGACTATGAGAACAGACTGGGATCAACAGGTGTCTTCGTCGTTGAAACGTTTGAACCGTTGGGTTGAACCAGAATCCCCAAGTCGAAACCAAACTTTACAAAACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

494

Amino Acids

54.18

Weight (kDa)

8.85

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	46 - 206	1.3e-31	MatE
MatE	PF01554	270 - 426	5.1e-27	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	696
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	650
AccBSI	CCGCTC	1 cut(s)	1214
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	4 cut(s)	60, 222, 717, 1214
AclI	AACGTT	1 cut(s)	1423
AclWI	GGATC	6 cut(s)	353, 374, 479, 650, 774, 1404
AcoI	YGGCCR	2 cut(s)	196, 219
AcsI	RAATTY	3 cut(s)	991, 1007, 1269
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	385, 727, 830
AgsI	TTSAA	8 cut(s)	763, 865, 972, 1174, 1184, 1420, 1429, 1442
AjiI	CACGTC	1 cut(s)	162
AloI	GAACNNNNNNTCC	2 cut(s)	1335, 1367
AluBI	AGCT	6 cut(s)	118, 188, 479, 545, 823, 1118
AluI	AGCT	6 cut(s)	118, 188, 479, 545, 823, 1118
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	6 cut(s)	353, 374, 479, 650, 774, 1404
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	6 cut(s)	134, 196, 219, 418, 773, 1155
ApeKI	GCWGC	3 cut(s)	578, 950, 953
ApoI	RAATTY	3 cut(s)	991, 1007, 1269
ArsI	GACNNNNNNTTYG	2 cut(s)	1024, 1056
Asp700I	GAANNNNTTC	1 cut(s)	1273
AspLEI	GCGC	2 cut(s)	292, 697
AspS9I	GGNCC	3 cut(s)	134, 419, 774
AsuHPI	GGTGA	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	650
BbsI	GAAGAC	2 cut(s)	595, 1401
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	3 cut(s)	565, 962, 965
BccI	CCATC	6 cut(s)	68, 207, 239, 410, 922, 1212
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	3 cut(s)	285, 293, 620
BfuAI	ACCTGC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	4 cut(s)	222, 579, 951, 954
BlsI	GCNGC	4 cut(s)	223, 580, 952, 955
BmgBI	CACGTC	1 cut(s)	162
BmgT120I	GGNCC	3 cut(s)	134, 419, 774
BmiI	GGNNCC	2 cut(s)	652, 1003
BmrI	ACTGGG	1 cut(s)	1402
BmsI	GCATC	2 cut(s)	504, 912
BmuI	ACTGGG	1 cut(s)	1402
BpiI	GAAGAC	2 cut(s)	595, 1401
BpmI	CTGGAG	2 cut(s)	941, 1218
Bpu10I	CCTNAGC	1 cut(s)	873
BsaBI	GATNNNNATC	1 cut(s)	1049
BsaI	GGTCTC	1 cut(s)	23
BsaWI	WCCGGW	3 cut(s)	164, 800, 1277
BsaXI	ACNNNNNCTCC	6 cut(s)	585, 615, 812, 842, 1191, 1221
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	3 cut(s)	924, 1187, 1397
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	1049
BseAI	TCCGGA	1 cut(s)	164
BseGI	GGATG	4 cut(s)	79, 90, 728, 1223
BseJI	GATNNNNATC	1 cut(s)	1049
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	560, 864
BseNI	ACTGG	3 cut(s)	924, 1187, 1397
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	565, 962, 965
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	1239
BshFI	GGCC	6 cut(s)	136, 198, 221, 420, 775, 1157
BshNI	GGYRCC	1 cut(s)	650
BsiEI	CGRYCG	1 cut(s)	1239
BsiSI	CCGG	4 cut(s)	137, 165, 801, 1278
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	6 cut(s)	136, 198, 221, 420, 775, 1157
Bso31I	GGTCTC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	164
BspACI	CCGC	4 cut(s)	60, 222, 717, 1214
BspANI	GGCC	6 cut(s)	136, 198, 221, 420, 775, 1157
BspCNI	CTCAG	2 cut(s)	559, 865
BspEI	TCCGGA	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	652, 1003
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	6 cut(s)	353, 374, 479, 650, 774, 1404
BspT107I	GGYRCC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	1214
BsrDI	GCAATG	1 cut(s)	690
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	924, 1187, 1397
BssAI	RCCGGY	1 cut(s)	136
Bst4CI	ACNGT	5 cut(s)	244, 1178, 1237, 1372, 1433
Bst6I	CTCTTC	2 cut(s)	4, 667
BstAPI	GCANNNNNTGC	1 cut(s)	813
BstC8I	GCNNGC	4 cut(s)	138, 418, 1252, 1364
BstDEI	CTNAG	2 cut(s)	546, 873
BstF5I	GGATG	4 cut(s)	79, 90, 728, 1223
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	292, 697
BstMAI	GTCTC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	1239
BstMWI	GCNNNNNNNGC	9 cut(s)	137, 204, 320, 575, 813, 878, 887, 1010, 1211
BstNSI	RCATGY	1 cut(s)	717
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	565, 962, 965
BstV2I	GAAGAC	2 cut(s)	595, 1401
BstX2I	RGATCY	2 cut(s)	345, 766
BstYI	RGATCY	2 cut(s)	345, 766
BsuRI	GGCC	6 cut(s)	136, 198, 221, 420, 775, 1157
BtgZI	GCGATG	1 cut(s)	550
BtrI	CACGTC	1 cut(s)	162
BtsCI	GGATG	4 cut(s)	79, 90, 728, 1223
BtsIMutI	CAGTG	1 cut(s)	917
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	4 cut(s)	138, 418, 1252, 1364
CfoI	GCGC	2 cut(s)	292, 697
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	134, 419, 774
Csp6I	GTAC	3 cut(s)	384, 726, 829
CspCI	CAANNNNNGTGG	2 cut(s)	1005, 1040
CviAII	CATG	7 cut(s)	280, 363, 599, 655, 714, 808, 946
CviQI	GTAC	3 cut(s)	384, 726, 829
DdeI	CTNAG	2 cut(s)	546, 873
DraI	TTTAAA	1 cut(s)	784
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	2 cut(s)	196, 219
Eam1104I	CTCTTC	2 cut(s)	4, 667
EarI	CTCTTC	2 cut(s)	4, 667
Eco31I	GGTCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	2 cut(s)	991, 1269
FaeI	CATG	7 cut(s)	283, 366, 602, 658, 717, 811, 949
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FatI	CATG	7 cut(s)	279, 362, 598, 654, 713, 807, 945
FauI	CCCGC	1 cut(s)	1207
FauNDI	CATATG	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	222, 579, 951, 954
FokI	GGATG	4 cut(s)	86, 97, 735, 1230
Fsp4HI	GCNGC	4 cut(s)	222, 579, 951, 954
FspBI	CTAG	3 cut(s)	285, 293, 620
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	2 cut(s)	291, 696
GluI	GCNGC	4 cut(s)	222, 579, 951, 954
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	941, 1218
HaeIII	GGCC	6 cut(s)	136, 198, 221, 420, 775, 1157
HapII	CCGG	4 cut(s)	137, 165, 801, 1278
HhaI	GCGC	2 cut(s)	292, 697
Hin1II	CATG	7 cut(s)	283, 366, 602, 658, 717, 811, 949
Hin6I	GCGC	2 cut(s)	290, 695
HinP1I	GCGC	2 cut(s)	290, 695
HincII	GTYRAC	2 cut(s)	48, 1243
HindII	GTYRAC	2 cut(s)	48, 1243
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	8 cut(s)	55, 107, 594, 744, 844, 1050, 1344, 1448
HpaI	GTTAAC	1 cut(s)	1243
HpaII	CCGG	4 cut(s)	137, 165, 801, 1278
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	48, 1243, 1307
Hpy188I	TCNGA	5 cut(s)	39, 471, 549, 1343, 1356
Hpy188III	TCNNGA	8 cut(s)	71, 165, 443, 640, 841, 982, 1171, 1197
Hpy8I	GTNNAC	3 cut(s)	48, 1243, 1307
Hpy99I	CGWCG	2 cut(s)	52, 1417
HpyAV	CCTTC	9 cut(s)	8, 44, 82, 88, 525, 529, 946, 1168, 1284
HpyCH4III	ACNGT	5 cut(s)	244, 1178, 1237, 1372, 1433
HpyCH4IV	ACGT	4 cut(s)	161, 573, 734, 1423
HpyCH4V	TGCA	5 cut(s)	416, 896, 903, 917, 1013
HpyF10VI	GCNNNNNNNGC	9 cut(s)	137, 204, 320, 575, 813, 878, 887, 1010, 1211
HpyF3I	CTNAG	2 cut(s)	546, 873
HpySE526I	ACGT	4 cut(s)	161, 573, 734, 1423
Hsp92II	CATG	7 cut(s)	283, 366, 602, 658, 717, 811, 949
HspAI	GCGC	2 cut(s)	290, 695
Kpn2I	TCCGGA	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
KspAI	GTTAAC	1 cut(s)	1243
LmnI	GCTCC	4 cut(s)	320, 820, 1001, 1211
Lsp1109I	GCAGC	3 cut(s)	565, 962, 965
LweI	GCATC	2 cut(s)	504, 912
MaeI	CTAG	3 cut(s)	285, 293, 620
MaeII	ACGT	4 cut(s)	161, 573, 734, 1423
MaeIII	GTNAC	3 cut(s)	22, 709, 1231
MbiI	CCGCTC	1 cut(s)	1214
MflI	RGATCY	2 cut(s)	345, 766
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	3 cut(s)	991, 1007, 1269
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	2 cut(s)	1189, 1246
Mox20I	TGGCCA	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	1273
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	4 cut(s)	783, 885, 1079, 1242
Msp20I	TGGCCA	1 cut(s)	198
MspI	CCGG	4 cut(s)	137, 165, 801, 1278
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	9 cut(s)	137, 204, 320, 575, 813, 878, 887, 1010, 1211
NaeI	GCCGGC	1 cut(s)	138
NdeI	CATATG	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	7 cut(s)	283, 366, 602, 658, 717, 811, 949
NlaIV	GGNNCC	2 cut(s)	652, 1003
NmuCI	GTSAC	2 cut(s)	22, 709
NsbI	TGCGCA	1 cut(s)	696
NspI	RCATGY	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	3 cut(s)	457, 1347, 1429
PdiI	GCCGGC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	1273
PfeI	GAWTC	7 cut(s)	55, 107, 744, 844, 1050, 1344, 1448
PkrI	GCNGC	4 cut(s)	223, 580, 952, 955
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	1423
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	652, 1003
PspPI	GGNCC	3 cut(s)	134, 419, 774
PsuI	RGATCY	2 cut(s)	345, 766
RsaI	GTAC	3 cut(s)	385, 727, 830
RsaNI	GTAC	3 cut(s)	384, 726, 829
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	4 cut(s)	783, 885, 1079, 1242
SatI	GCNGC	4 cut(s)	222, 579, 951, 954
Sau96I	GGNCC	3 cut(s)	134, 419, 774
SchI	GAGTC	1 cut(s)	603
SfaNI	GCATC	2 cut(s)	504, 912
Sse9I	AATT	3 cut(s)	991, 1007, 1269
SsiI	CCGC	4 cut(s)	60, 222, 717, 1214
SspMI	CTAG	3 cut(s)	285, 293, 620
TaaI	ACNGT	5 cut(s)	244, 1178, 1237, 1372, 1433
TaiI	ACGT	4 cut(s)	164, 576, 737, 1426
TaqI	TCGA	5 cut(s)	47, 836, 1031, 1043, 1459
TasI	AATT	3 cut(s)	991, 1007, 1269
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	7 cut(s)	55, 107, 744, 844, 1050, 1344, 1448
Tru1I	TTAA	4 cut(s)	783, 885, 1079, 1242
Tru9I	TTAA	4 cut(s)	783, 885, 1079, 1242
TscAI	CASTG	1 cut(s)	924
TseFI	GTSAC	2 cut(s)	22, 709
TseI	GCWGC	3 cut(s)	578, 950, 953
Tsp45I	GTSAC	2 cut(s)	22, 709
TspDTI	ATGAA	5 cut(s)	101, 181, 617, 934, 1083
TspGWI	ACGGA	4 cut(s)	41, 65, 242, 743
TspRI	CASTG	1 cut(s)	924
XapI	RAATTY	3 cut(s)	991, 1007, 1269
XceI	RCATGY	1 cut(s)	717
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	1273
XspI	CTAG	3 cut(s)	285, 293, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.