Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Reverse (-)

4316869 .. 4320955

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGAAGAAGACATCACAAATAATCTTCTGATAAGAGAGGCAAGTGCACAAGGGAATCGTGTTGATGATAAGGATGAGGATTTGCCACTCAAAACCAGGGTATGGAATGAAAACAAGAAGCTGTGGGTGGTGGCTGGCCCTGCTATATTCACCAGAGTTTCCACCTTTGGAACAAATATCGTCAGTCAAGCCTTCATTGGTCACATTGGCTCTACTGAATTAGCTGCATTTTCACTTGTATTCACCGTACTTGTTCGGTTCGCAAATGGCCTCTTGCTGGGCATGGCTAGTGCGTTGGAAACTGTTTGTGGTCAATCATATGGTGCAAAGCAATACCACATGCTTGGGGTGCATCTTCAAAGGTCATGGATAGTACTGTTTGTGAGCACATTGTTCCTCATTCCTATTTGCATCTTCGCAACTCCGATTCTCGAGGCTTTAGGCCAAAAAGATAATATTGCAGAAGAGGCAGGATATATTTCTCTATGGGTGATCCCGGTGCTTTTCGCTTTTGTTGTATCCTTTACCTGTCAAATGTACTTACAATCACAGAGCAAAAATATGATCATTGCTTATGTGTCAGCAGTTTCAATTACAATCCACATCCTCCTTTCATGGCTTTTGACTGTGAAATTTAAGTTCGGGGTTGCTGGTGCAATGGTGTCAACGGTTATAGCGTATTGGCTACCAAACGTGTGTCAGCTTTTGTTTGTTCTATGTGGAGGATGCCCAGACACTTGGACCGGCTTCTCTACCTTAGCTTTTAAAGATCTATGGAATGTCGTCAAGCTTTCTCTGTCATCTGGTGTTATGCTTTGTCTCGAGCTTTGGTACAACACGATCTTGGTTCTTCTAACGGGAAACATGGAAGATGCTGAAGTTTCTATTGATGCTCTAGCTATTTGCCTCAACATCAATGGGTGGGAAATGATGATAGCCCTTGGTTTCCTGGCTACAGCAAGTGTACGAGTGTCGAATGAGCTTGGACGGGGTAGCGCAAAAGCGGCAAAGTTCTCTGTTGTGGTTATTGTGTTGACATCACTTTCCATTGGCTTTGTGCTCTTCTTGCTTTTCCTGTTCTTGAGGGAACGTCTTGCCTACATTTTCACCACCAACGACGAGGTAGCTAAGAAGGTTGCAGAGCTGTCACCTTTACTGGCCTTCTCCATATTGTTGAACAGTGTTCAGCCTGTGCTCTCTGGAGTTGCTATAGGAGCTGGATGGCAGAGTATTGTAGCATATGTCAACATAGCGTGCTATTATCTTATAGGGATTCCAATTGGAGCTGTGTTGGGTTTTCTTCTACATCTACAAGTCAAAGGTGTTTGGATTGGAATGTTGTTTGGAACATTTGTCCAAACTATTGTACTAGTCATACTCACTTGCAAAACTGATTGGGAGAAACAGGTAACAATAGCTCGTAACCGTGTTCGCAAGTGGAATGTTAGAGAAGATATTGGAGAACCAAACCCCAACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

494

Amino Acids

54.23

Weight (kDa)

6.54

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	102
AciI	CCGC	1 cut(s)	1004
AclWI	GGATC	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	897
AfaI	GTAC	6 cut(s)	249, 375, 539, 833, 966, 1368
AfiI	CCNNNNNNNGG	2 cut(s)	102, 277
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	3 cut(s)	359, 591, 1177
AhlI	ACTAGT	1 cut(s)	1369
AjnI	CCWGG	2 cut(s)	95, 948
Alw21I	GWGCWC	4 cut(s)	49, 389, 1062, 1197
Alw26I	GTCTC	1 cut(s)	824
Alw44I	GTGCAC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	2 cut(s)	431, 821
AoxI	GGCC	4 cut(s)	136, 268, 442, 1158
ApaLI	GTGCAC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	998
AspS9I	GGNCC	2 cut(s)	137, 741
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	5 cut(s)	142, 235, 502, 1099, 1140
AvaI	CYCGRG	2 cut(s)	431, 821
AvaII	GGWCC	1 cut(s)	741
BaeGI	GKGCMC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	4 cut(s)	49, 389, 1062, 1197
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	1215
BciT130I	CCWGG	2 cut(s)	97, 950
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	824
BcuI	ACTAGT	1 cut(s)	1369
BfaI	CTAG	3 cut(s)	288, 896, 1370
BfmI	CTRYAG	2 cut(s)	954, 1209
BfuI	GTATCC	1 cut(s)	529
BglII	AGATCT	1 cut(s)	769
BisI	GCNGC	2 cut(s)	225, 1005
BlsI	GCNGC	2 cut(s)	226, 1006
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	3 cut(s)	97, 497, 950
Bme18I	GGWCC	1 cut(s)	741
BmeT110I	CYCGRG	2 cut(s)	431, 821
BmgT120I	GGNCC	2 cut(s)	137, 741
BmrFI	CCNGG	3 cut(s)	97, 497, 950
BmsI	GCATC	5 cut(s)	361, 420, 716, 862, 880
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	1221
Bpu10I	CCTNAGC	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	1102
BpuMI	CCSGG	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	96, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 277
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	1 cut(s)	1161
Bse3DI	GCAATG	2 cut(s)	567, 663
BseBI	CCWGG	2 cut(s)	97, 950
BseDI	CCNNGG	2 cut(s)	96, 940
BseGI	GGATG	4 cut(s)	79, 603, 731, 1226
BseLI	CCNNNNNNNGG	2 cut(s)	102, 277
BseMI	GCAATG	2 cut(s)	567, 663
BseNI	ACTGG	1 cut(s)	1161
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	4 cut(s)	138, 270, 444, 1160
BsiHKAI	GWGCWC	4 cut(s)	49, 389, 1062, 1197
BsiHKCI	CYCGRG	2 cut(s)	431, 821
BsiSI	CCGG	2 cut(s)	497, 744
BslI	CCNNNNNNNGG	2 cut(s)	102, 277
BsmAI	GTCTC	1 cut(s)	824
BsnI	GGCC	4 cut(s)	138, 270, 444, 1160
BsoBI	CYCGRG	2 cut(s)	431, 821
Bsp1286I	GDGCHC	4 cut(s)	49, 389, 1062, 1197
Bsp143I	GATC	4 cut(s)	492, 564, 769, 840
BspACI	CCGC	1 cut(s)	1004
BspANI	GGCC	4 cut(s)	138, 270, 444, 1160
BspPI	GGATC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	1067
BsrDI	GCAATG	2 cut(s)	567, 663
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	1161
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	2 cut(s)	96, 940
BssMI	GATC	4 cut(s)	492, 564, 769, 840
BssT1I	CCWWGG	1 cut(s)	940
Bst2UI	CCWGG	2 cut(s)	97, 950
Bst4CI	ACNGT	7 cut(s)	247, 304, 378, 628, 670, 1181, 1427
Bst6I	CTCTTC	2 cut(s)	459, 1067
BstC8I	GCNNGC	2 cut(s)	136, 1255
BstDEI	CTNAG	2 cut(s)	757, 1128
BstF5I	GGATG	4 cut(s)	79, 603, 731, 1226
BstHHI	GCGC	1 cut(s)	998
BstKTI	GATC	4 cut(s)	495, 567, 772, 843
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	4 cut(s)	492, 564, 769, 840
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 349, 467, 1004, 1066, 1214
BstNI	CCWGG	2 cut(s)	97, 950
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	95, 495, 948
BstSFI	CTRYAG	2 cut(s)	954, 1209
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	2 cut(s)	344, 738
BstYI	RGATCY	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	138, 270, 444, 1160
BtsCI	GGATG	4 cut(s)	79, 603, 731, 1226
BtsIMutI	CAGTG	1 cut(s)	1186
Cac8I	GCNNGC	2 cut(s)	136, 1255
CfoI	GCGC	1 cut(s)	998
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	137, 741
Csp6I	GTAC	6 cut(s)	248, 374, 538, 832, 965, 1367
CviAII	CATG	5 cut(s)	283, 340, 366, 615, 865
CviQI	GTAC	6 cut(s)	248, 374, 538, 832, 965, 1367
DdeI	CTNAG	2 cut(s)	757, 1128
DpnI	GATC	4 cut(s)	494, 566, 771, 842
DpnII	GATC	4 cut(s)	492, 564, 769, 840
DraI	TTTAAA	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	459, 1067
EarI	CTCTTC	2 cut(s)	459, 1067
Eco130I	CCWWGG	1 cut(s)	940
Eco47I	GGWCC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	897
Eco88I	CYCGRG	2 cut(s)	431, 821
EcoRII	CCWGG	2 cut(s)	95, 948
EcoT14I	CCWWGG	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	940
FaeI	CATG	5 cut(s)	286, 343, 369, 618, 868
FatI	CATG	5 cut(s)	282, 339, 365, 614, 864
FauNDI	CATATG	2 cut(s)	319, 1240
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	225, 1005
FokI	GGATG	4 cut(s)	86, 590, 738, 1233
Fsp4HI	GCNGC	2 cut(s)	225, 1005
FspBI	CTAG	3 cut(s)	288, 896, 1370
GlaI	GCGC	1 cut(s)	997
GluI	GCNGC	2 cut(s)	225, 1005
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	1221
HaeIII	GGCC	4 cut(s)	138, 270, 444, 1160
HapII	CCGG	2 cut(s)	497, 744
HhaI	GCGC	1 cut(s)	998
Hin1II	CATG	5 cut(s)	286, 343, 369, 618, 868
Hin6I	GCGC	1 cut(s)	996
HinP1I	GCGC	1 cut(s)	996
HincII	GTYRAC	3 cut(s)	666, 1035, 1246
HindII	GTYRAC	3 cut(s)	666, 1035, 1246
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	3 cut(s)	55, 427, 1273
HpaII	CCGG	2 cut(s)	497, 744
HphI	GGTGA	5 cut(s)	142, 235, 502, 1099, 1140
Hpy166II	GTNNAC	5 cut(s)	47, 666, 965, 1035, 1246
Hpy188I	TCNGA	2 cut(s)	30, 426
Hpy188III	TCNNGA	4 cut(s)	431, 821, 1081, 1200
Hpy8I	GTNNAC	5 cut(s)	47, 666, 965, 1035, 1246
Hpy99I	CGWCG	1 cut(s)	1121
HpyAV	CCTTC	3 cut(s)	202, 1126, 1171
HpyCH4III	ACNGT	7 cut(s)	247, 304, 378, 628, 670, 1181, 1427
HpyCH4IV	ACGT	2 cut(s)	693, 1090
HpyCH4V	TGCA	9 cut(s)	47, 227, 326, 352, 411, 461, 656, 1139, 1386
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 349, 467, 1004, 1066, 1214
HpyF3I	CTNAG	2 cut(s)	757, 1128
HpySE526I	ACGT	2 cut(s)	693, 1090
Hsp92II	CATG	5 cut(s)	286, 343, 369, 618, 868
HspAI	GCGC	1 cut(s)	996
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	492, 564, 769, 840
LguI	GCTCTTC	1 cut(s)	1067
LmnI	GCTCC	2 cut(s)	1214, 1283
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	5 cut(s)	361, 420, 716, 862, 880
MaeI	CTAG	3 cut(s)	288, 896, 1370
MaeII	ACGT	2 cut(s)	693, 1090
MaeIII	GTNAC	4 cut(s)	200, 1146, 1408, 1421
MalI	GATC	4 cut(s)	494, 566, 771, 842
MboI	GATC	4 cut(s)	492, 564, 769, 840
MfeI	CAATTG	1 cut(s)	1278
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	4 cut(s)	49, 389, 1062, 1197
MluCI	AATT	4 cut(s)	218, 591, 632, 1278
MmeI	TCCRAC	1 cut(s)	276
MseI	TTAA	2 cut(s)	636, 765
MspI	CCGG	2 cut(s)	497, 744
MspR9I	CCNGG	3 cut(s)	97, 497, 950
MunI	CAATTG	1 cut(s)	1278
MvaI	CCWGG	2 cut(s)	97, 950
MwoI	GCNNNNNNNGC	6 cut(s)	140, 349, 467, 1004, 1066, 1214
NciI	CCSGG	1 cut(s)	497
NdeI	CATATG	2 cut(s)	319, 1240
NdeII	GATC	4 cut(s)	492, 564, 769, 840
NlaIII	CATG	5 cut(s)	286, 343, 369, 618, 868
NmuCI	GTSAC	2 cut(s)	200, 1146
NspI	RCATGY	1 cut(s)	343
PaeR7I	CTCGAG	2 cut(s)	431, 821
PciSI	GCTCTTC	1 cut(s)	1067
PcsI	WCGNNNNNNNCGW	1 cut(s)	674
PfeI	GAWTC	3 cut(s)	55, 427, 1273
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	226, 1006
Psp6I	CCWGG	2 cut(s)	95, 948
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	2 cut(s)	95, 948
PspPI	GGNCC	2 cut(s)	137, 741
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	6 cut(s)	249, 375, 539, 833, 966, 1368
RsaNI	GTAC	6 cut(s)	248, 374, 538, 832, 965, 1367
SapI	GCTCTTC	1 cut(s)	1067
SaqAI	TTAA	2 cut(s)	636, 765
SatI	GCNGC	2 cut(s)	225, 1005
Sau3AI	GATC	4 cut(s)	492, 564, 769, 840
Sau96I	GGNCC	2 cut(s)	137, 741
ScaI	AGTACT	1 cut(s)	375
ScrFI	CCNGG	3 cut(s)	97, 497, 950
SduI	GDGCHC	4 cut(s)	49, 389, 1062, 1197
SfaNI	GCATC	5 cut(s)	361, 420, 716, 862, 880
SfcI	CTRYAG	2 cut(s)	954, 1209
Sfr274I	CTCGAG	2 cut(s)	431, 821
SinI	GGWCC	1 cut(s)	741
SlaI	CTCGAG	2 cut(s)	431, 821
SmlI	CTYRAG	3 cut(s)	431, 821, 1081
SmoI	CTYRAG	3 cut(s)	431, 821, 1081
SpeI	ACTAGT	1 cut(s)	1369
Sse9I	AATT	4 cut(s)	218, 591, 632, 1278
SsiI	CCGC	1 cut(s)	1004
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	3 cut(s)	288, 896, 1370
StyD4I	CCNGG	3 cut(s)	95, 495, 948
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	7 cut(s)	247, 304, 378, 628, 670, 1181, 1427
TaiI	ACGT	2 cut(s)	696, 1093
TaqI	TCGA	3 cut(s)	432, 822, 974
TasI	AATT	4 cut(s)	218, 591, 632, 1278
TatI	WGTACW	3 cut(s)	373, 537, 1366
TauI	GCSGC	1 cut(s)	1007
TfiI	GAWTC	3 cut(s)	55, 427, 1273
Tru1I	TTAA	2 cut(s)	636, 765
Tru9I	TTAA	2 cut(s)	636, 765
TscAI	CASTG	1 cut(s)	1186
TseFI	GTSAC	2 cut(s)	200, 1146
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	2 cut(s)	200, 1146
TspDTI	ATGAA	3 cut(s)	123, 184, 603
TspRI	CASTG	1 cut(s)	1186
Van91I	CCANNNNNTGG	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	741
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	343
XhoI	CTCGAG	2 cut(s)	431, 821
XspI	CTAG	3 cut(s)	288, 896, 1370
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.