Rh3DG357400

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003806
Physical Location & Seq
Reverse (-)
43643882 .. 43647042
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG357400.1

Sequence Viewer

Length: 804 bp
ATGGGGGAGGAAGACATAAAGAGGAAACTGCTGATAAAGGGTGAAGATGAACGTGAACACGATTTGGGTTTGCAATACAGAGTGTGGAATGAAAGCAAGAAGATTTGGGTGATAGCTGGACCTGCTATATTCACCAGATTCTCTACTTTTGGAACAAATGTGGTCAGTCAAGCCTTCATTGGTCACATTGGCTCTACTGAGTTAGCTGCATATTCACTCGTCTTTACTGTACTGGTCAGGTTCGCAAATGGCATCCTGCTGGGAATGGCTAGTGCGCTGGAAACTCTTTGTGGTCAATCATATGGTGCAAAACAATATGACATGCTTGGGGTACATCTTCAGAGATCATGGATAGTGTTGTTTGTCAGCGCATTCTTCCTTGTTCCTATTTGCATCTTTACAACTCCAATCTTAGAGGCCTTAGGACAGGAACATAATATTGCACAAGTGGCGGGCTATATTTCTCTCTGGGTAATCCCGGTGATTTTCGCCTTTGTTTTATCCTTTACCTGCCAAATGTACTTGCAAGCACAGAGCAAAAATATGATCATAGCTTACTTGTCAGCAATTTCAATTGCAATCCACATCCTCCTTTCATGGCTTTTGACTGTGAAATATCAGCTTGGGATTCCTGGCGCAATGGTGTCCACAATTTTAGCATTTTGGATTCCCAACATTGGTCAACTTTTATTTGTTATATGTGGAGGATGCCCACAGACATGGAAAGGCTTCTCGATGTTAGCTTTTAAAGATCTCTGGGATGTCGTCAAGCTTTCTCTGTCTTCTGGTGTTATGCTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

267

Amino Acids

29.74

Weight (kDa)

7.65

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 41 - 201 7.3e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 130, 518
AciI CCGC 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 3 cut(s) 231, 333, 521
AfiI CCNNNNNNNGG 1 cut(s) 677
AgsI TTSAA 1 cut(s) 573
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 6 cut(s) 116, 206, 554, 622, 743, 772
AluI AGCT 6 cut(s) 116, 206, 554, 622, 743, 772
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 728
AspLEI GCGC 3 cut(s) 277, 371, 638
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 4 cut(s) 53, 121, 124, 493
AvaII GGWCC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 421
BbsI GAAGAC 2 cut(s) 18, 774
BbvI GCAGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 479
BfaI CTAG 1 cut(s) 270
BfuAI ACCTGC 2 cut(s) 130, 518
BglII AGATCT 1 cut(s) 751
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 479, 633
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 479, 633
BmsI GCATC 3 cut(s) 261, 402, 698
BpiI GAAGAC 2 cut(s) 18, 774
BpuMI CCSGG 1 cut(s) 479
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 1 cut(s) 633
BseGI GGATG 4 cut(s) 252, 585, 713, 766
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 419
BsiSI CCGG 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 677
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 1 cut(s) 419
Bsp143I GATC 3 cut(s) 344, 546, 751
BspACI CCGC 1 cut(s) 452
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 1 cut(s) 190
BspMI ACCTGC 2 cut(s) 130, 518
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 1 cut(s) 237
BssMI GATC 3 cut(s) 344, 546, 751
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 2 cut(s) 229, 610
BstC8I GCNNGC 2 cut(s) 454, 528
BstDEI CTNAG 3 cut(s) 198, 412, 421
BstF5I GGATG 4 cut(s) 252, 585, 713, 766
BstHHI GCGC 3 cut(s) 277, 371, 638
BstKTI GATC 3 cut(s) 347, 549, 754
BstMBI GATC 3 cut(s) 344, 546, 751
BstMWI GCNNNNNNNGC 2 cut(s) 122, 449
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 477, 631
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 18, 774
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 720
BstYI RGATCY 1 cut(s) 751
Bsu36I CCTNAGG 1 cut(s) 421
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 4 cut(s) 252, 585, 713, 766
BveI ACCTGC 2 cut(s) 130, 518
Cac8I GCNNGC 2 cut(s) 454, 528
CfoI GCGC 3 cut(s) 277, 371, 638
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 230, 332, 520
CviAII CATG 4 cut(s) 322, 348, 597, 720
CviQI GTAC 3 cut(s) 230, 332, 520
DdeI CTNAG 3 cut(s) 198, 412, 421
DpnI GATC 3 cut(s) 346, 548, 753
DpnII GATC 3 cut(s) 344, 546, 751
DraI TTTAAA 1 cut(s) 748
Eco147I AGGCCT 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 631
FaeI CATG 4 cut(s) 325, 351, 600, 723
FatI CATG 4 cut(s) 321, 347, 596, 719
FauI CCCGC 1 cut(s) 445
FauNDI CATATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 4 cut(s) 239, 572, 720, 773
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 270
GlaI GCGC 3 cut(s) 276, 370, 637
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 419
HapII CCGG 1 cut(s) 479
HhaI GCGC 3 cut(s) 277, 371, 638
Hin1II CATG 4 cut(s) 325, 351, 600, 723
Hin6I GCGC 3 cut(s) 275, 369, 636
HinP1I GCGC 3 cut(s) 275, 369, 636
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 3 cut(s) 138, 628, 667
HpaII CCGG 1 cut(s) 479
HphI GGTGA 4 cut(s) 53, 121, 124, 493
Hpy166II GTNNAC 3 cut(s) 56, 648, 683
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 1 cut(s) 733
Hpy8I GTNNAC 3 cut(s) 56, 648, 683
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 229, 610
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 7 cut(s) 73, 209, 308, 393, 443, 526, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 449
HpyF3I CTNAG 3 cut(s) 198, 412, 421
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 4 cut(s) 325, 351, 600, 723
HspAI GCGC 3 cut(s) 275, 369, 636
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 3 cut(s) 344, 546, 751
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 3 cut(s) 261, 402, 698
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 346, 548, 753
MboI GATC 3 cut(s) 344, 546, 751
MboII GAAGA 6 cut(s) 23, 56, 112, 329, 367, 774
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 751
MluCI AATT 3 cut(s) 567, 573, 651
MnlI CCTC 4 cut(s) 15, 409, 599, 698
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 1 cut(s) 747
MslI CAYNNNNRTG 1 cut(s) 718
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 2 cut(s) 479, 633
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 2 cut(s) 122, 449
NciI CCSGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 301
NdeII GATC 3 cut(s) 344, 546, 751
NlaIII CATG 4 cut(s) 325, 351, 600, 723
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 325
PceI AGGCCT 1 cut(s) 419
PctI GAATGC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 3 cut(s) 138, 628, 667
PkrI GCNGC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 631
PspPI GGNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 3 cut(s) 231, 333, 521
RsaNI GTAC 3 cut(s) 230, 332, 520
RseI CAYNNNNRTG 1 cut(s) 718
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 344, 546, 751
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 479, 633
SfaNI GCATC 3 cut(s) 261, 402, 698
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 718
Sse9I AATT 3 cut(s) 567, 573, 651
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 1 cut(s) 452
SspI AATATT 1 cut(s) 439
SspMI CTAG 1 cut(s) 270
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 477, 631
TaaI ACNGT 2 cut(s) 229, 610
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 734
TasI AATT 3 cut(s) 567, 573, 651
TatI WGTACW 2 cut(s) 229, 519
TfiI GAWTC 3 cut(s) 138, 628, 667
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 63, 105, 166, 585
VpaK11BI GGWCC 1 cut(s) 119
XceI RCATGY 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.