Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Forward (+)

1511347 .. 1514983

Gene Structure 3637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1014700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGGAGAAGAGATTAAAGGGAGTCTCTTGGTAAAAGAGACTGGTGTTGGAGAAGAAGAGGCTAGAATTATTGATGGCGATGAAGAATTGTCACTGAAAAGAAGAGTATGGATTGAAACCAAGAAGATGTGGGTGGTGGCTGGCCCTGCTATATTCACCAGAGTTGCGAGTTTCGGAACAAATGTTATCAGTCAAGCGTTTATCGGTCACATTGGTTCTGCGCAGCTAGCGGCTTTTTCACTCGTGTTCACCGTACTTGTCAGGTTCGCAAATGGCATCTTGCTTGGCATGGCAAGTGCGCTGGAAACTCTCTGTGGTCAATCGTATGGTGCAAAACAGTACAACATGCTTGGGATACATCTTCAGAGGTCATGGATAGTACTGTTTGTAAGCACATGCTTGCTTATTCCTCTTTTCGTCTTTACAACCCCGATTTTTGAGGCTTTAGGCCAAGCAGAAAACATTTCAGAAATTGCAGGACATATTTCTCTATGGGTAATCCCTGTGCTTTTTGCATTTGTGGTCTCATTTACTTGCCAAATGTACTTACAAGCGCAAAGCAAAAATATGATCATTGCATATGTGTCAGCGATTTCAATTGGAATCCACATCTTTCTTTGCTGGCTTTTGAGTGTGAAATTGAAGTTTGGGGTTCCCGGTGTAATGGTGTCAACGCTTATAGCATATTGGTTACCCAACCTGGGTCAGCTTTTGTTTGTTCTATGTGGAGGATGCCCCGAAACATGGACAGGCTTCTCTATGTTAGCTTTTACTGATCTCTGGGATGTCCTCAAGCTTTCTCTGTCATCTGGCGTTATGCTTTGTCTCGAGCTTTGGTACAACACAATCTTGGTCCTTTTAACGGGAAACATGGAAAATGCTGAAGTTTCTATCGATGCCCTATCTATTTGCCTTAACATCGTCGGGTGGGAAATGATGATATCTCTCGGTTTCCTCGCTGCAGCAAGTGTACGGGTGTCGAATGAGCTTGGAAGGGGTAGCTCAAAGGCGGCAAAGTTCTCGATTGTAGTTATTGTGTCGATCTCAGTAGGCATTGGATTGGTGCTTTTCGTGCTTTTCTTGTTCTTGAGGGAACAACTTGCATACATTTTCACCGACGATGAGGCTGTAGCTAAAATGGTGGCTGAGTTGTCTCCTTTGTTGGCCTTCTCCATACTGTTGAACAGCGTTCAACCCGTGCTCTCTGGAGTTGCTCTGGGAGCTGGATGGCAGAAATATGTAGCATATGTGAACCTAGCCTGCTATTACATCGTAGGGATTCCTGTTGGAGTTGTGCTTGGTTATCCTCTAAAAATGCAAGTCGAAGGTGTTTGGATTGGAATGTTGTTTGGAACATTGGTCCAAACTATTGTGCTAATCATACTCACCTACAAGACTGATTGGGATAAACAGGTAGAAATAGCTCGCAACCGTGTTAACAGGTGGGATCGAACAAATAACAGAGAATCGAACATCGACACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

495

Amino Acids

54.28

Weight (kDa)

5.56

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	49 - 209	3e-28	MatE
MatE	PF01554	271 - 431	8.4e-31	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	222
AciI	CCGC	2 cut(s)	230, 1010
AclWI	GGATC	1 cut(s)	1455
AcuI	CTGAAG	2 cut(s)	347, 903
AcvI	CACGTG	1 cut(s)	1482
AfaI	GTAC	6 cut(s)	255, 341, 381, 545, 839, 972
AfiI	CCNNNNNNNGG	3 cut(s)	701, 744, 862
AflIII	ACRYGT	1 cut(s)	1479
AgsI	TTSAA	5 cut(s)	116, 597, 643, 1183, 1193
AjnI	CCWGG	1 cut(s)	699
Alw21I	GWGCWC	1 cut(s)	1203
Alw26I	GTCTC	5 cut(s)	29, 32, 529, 830, 1158
AlwI	GGATC	1 cut(s)	1455
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	3 cut(s)	142, 448, 1164
ApeKI	GCWGC	3 cut(s)	223, 959, 962
AspLEI	GCGC	3 cut(s)	223, 301, 556
AspS9I	GGNCC	3 cut(s)	143, 853, 1360
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	4 cut(s)	148, 241, 1105, 1378
AsuNHI	GCTAGC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	853, 1360
BauI	CACGAG	1 cut(s)	242
BbrPI	CACGTG	1 cut(s)	1482
Bbv12I	GWGCWC	1 cut(s)	1203
BbvI	GCAGC	3 cut(s)	235, 946, 974
BccI	CCATC	2 cut(s)	68, 1221
BcgI	CGANNNNNNTGC	2 cut(s)	1002, 1036
BciT130I	CCWGG	1 cut(s)	701
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	5 cut(s)	29, 32, 529, 830, 1158
BfaI	CTAG	3 cut(s)	63, 227, 1256
BfmI	CTRYAG	2 cut(s)	960, 1128
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	5 cut(s)	224, 231, 960, 963, 1011
BlsI	GCNGC	5 cut(s)	225, 232, 961, 964, 1012
BmcAI	AGTACT	1 cut(s)	381
Bme1390I	CCNGG	2 cut(s)	657, 701
Bme18I	GGWCC	2 cut(s)	853, 1360
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	3 cut(s)	143, 853, 1360
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	2 cut(s)	657, 701
BmsI	GCATC	3 cut(s)	285, 722, 886
BmtI	GCTAGC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	1227
BpuEI	CTTGAG	2 cut(s)	776, 1108
BpuMI	CCSGG	1 cut(s)	657
Bsa29I	ATCGAT	1 cut(s)	894
BsaAI	YACGTR	1 cut(s)	1482
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	3 cut(s)	701, 744, 862
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	701
BseCI	ATCGAT	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	3 cut(s)	737, 790, 1232
BseLI	CCNNNNNNNGG	3 cut(s)	701, 744, 862
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	1059, 1137
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	235, 946, 974
BshFI	GGCC	3 cut(s)	144, 450, 1166
BshVI	ATCGAT	1 cut(s)	894
BsiHKAI	GWGCWC	1 cut(s)	1203
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	701, 744, 862
BsmAI	GTCTC	5 cut(s)	29, 32, 529, 830, 1158
BsnI	GGCC	3 cut(s)	144, 450, 1166
Bso31I	GGTCTC	1 cut(s)	529
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	1203
Bsp143I	GATC	4 cut(s)	570, 775, 1041, 1447
BspACI	CCGC	2 cut(s)	230, 1010
BspANI	GGCC	3 cut(s)	144, 450, 1166
BspCNI	CTCAG	2 cut(s)	1058, 1138
BspDI	ATCGAT	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	654
BspMAI	CTGCAG	1 cut(s)	964
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	1455
BspTNI	GGTCTC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	4 cut(s)	570, 775, 1041, 1447
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	5 cut(s)	253, 339, 384, 1179, 1433
Bst6I	CTCTTC	3 cut(s)	3, 51, 97
BstBAI	YACGTR	1 cut(s)	1482
BstC8I	GCNNGC	6 cut(s)	142, 228, 401, 623, 1261, 1426
BstDEI	CTNAG	2 cut(s)	1045, 1146
BstEII	GGTNACC	1 cut(s)	690
BstF5I	GGATG	3 cut(s)	737, 790, 1232
BstHHI	GCGC	3 cut(s)	223, 301, 556
BstKTI	GATC	4 cut(s)	573, 778, 1044, 1450
BstMAI	GTCTC	5 cut(s)	29, 32, 529, 830, 1158
BstMBI	GATC	4 cut(s)	570, 775, 1041, 1447
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 227, 1072, 1220
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	2 cut(s)	349, 399
BstPI	GGTNACC	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	655, 699
BstSFI	CTRYAG	2 cut(s)	960, 1128
BstV1I	GCAGC	3 cut(s)	235, 946, 974
Bsu15I	ATCGAT	1 cut(s)	894
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	144, 450, 1166
BsuTUI	ATCGAT	1 cut(s)	894
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	737, 790, 1232
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	6 cut(s)	142, 228, 401, 623, 1261, 1426
CfoI	GCGC	3 cut(s)	223, 301, 556
Cfr13I	GGNCC	3 cut(s)	143, 853, 1360
ClaI	ATCGAT	1 cut(s)	894
Csp6I	GTAC	6 cut(s)	254, 340, 380, 544, 838, 971
CviAII	CATG	6 cut(s)	289, 346, 372, 396, 744, 871
CviQI	GTAC	6 cut(s)	254, 340, 380, 544, 838, 971
DdeI	CTNAG	2 cut(s)	1045, 1146
DpnI	GATC	4 cut(s)	572, 777, 1043, 1449
DpnII	GATC	4 cut(s)	570, 775, 1041, 1447
Eam1104I	CTCTTC	3 cut(s)	3, 51, 97
EarI	CTCTTC	3 cut(s)	3, 51, 97
Eco31I	GGTCTC	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	942
Eco47I	GGWCC	2 cut(s)	853, 1360
Eco57I	CTGAAG	2 cut(s)	347, 903
Eco72I	CACGTG	1 cut(s)	1482
Eco88I	CYCGRG	1 cut(s)	827
Eco91I	GGTNACC	1 cut(s)	690
EcoO65I	GGTNACC	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	699
EcoRV	GATATC	1 cut(s)	942
FaeI	CATG	6 cut(s)	292, 349, 375, 399, 747, 874
FatI	CATG	6 cut(s)	288, 345, 371, 395, 743, 870
FauNDI	CATATG	2 cut(s)	580, 1246
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	5 cut(s)	224, 231, 960, 963, 1011
FokI	GGATG	3 cut(s)	744, 797, 1239
Fsp4HI	GCNGC	5 cut(s)	224, 231, 960, 963, 1011
FspBI	CTAG	3 cut(s)	63, 227, 1256
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	3 cut(s)	222, 300, 555
GluI	GCNGC	5 cut(s)	224, 231, 960, 963, 1011
GsuI	CTGGAG	1 cut(s)	1227
HaeIII	GGCC	3 cut(s)	144, 450, 1166
HapII	CCGG	1 cut(s)	657
HhaI	GCGC	3 cut(s)	223, 301, 556
Hin1II	CATG	6 cut(s)	292, 349, 375, 399, 747, 874
Hin6I	GCGC	3 cut(s)	221, 299, 554
HinP1I	GCGC	3 cut(s)	221, 299, 554
HincII	GTYRAC	2 cut(s)	672, 1438
HindII	GTYRAC	2 cut(s)	672, 1438
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	4 cut(s)	22, 603, 1279, 1466
HpaI	GTTAAC	1 cut(s)	1438
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	4 cut(s)	148, 241, 1105, 1378
Hpy166II	GTNNAC	5 cut(s)	249, 672, 971, 1252, 1438
Hpy188I	TCNGA	3 cut(s)	176, 366, 469
Hpy188III	TCNNGA	4 cut(s)	827, 1021, 1087, 1206
Hpy8I	GTNNAC	5 cut(s)	249, 672, 971, 1252, 1438
Hpy99I	CGWCG	2 cut(s)	926, 1121
HpyAV	CCTTC	3 cut(s)	987, 1177, 1319
HpyCH4III	ACNGT	5 cut(s)	253, 339, 384, 1179, 1433
HpyCH4IV	ACGT	1 cut(s)	1481
HpyCH4V	TGCA	7 cut(s)	332, 476, 515, 578, 962, 1103, 1318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 227, 1072, 1220
HpyF3I	CTNAG	2 cut(s)	1045, 1146
HpySE526I	ACGT	1 cut(s)	1481
Hsp92II	CATG	6 cut(s)	292, 349, 375, 399, 747, 874
HspAI	GCGC	3 cut(s)	221, 299, 554
Ksp22I	TGATCA	1 cut(s)	570
KspAI	GTTAAC	1 cut(s)	1438
Kzo9I	GATC	4 cut(s)	570, 775, 1041, 1447
LmnI	GCTCC	1 cut(s)	1220
Lsp1109I	GCAGC	3 cut(s)	235, 946, 974
LweI	GCATC	3 cut(s)	285, 722, 886
MaeI	CTAG	3 cut(s)	63, 227, 1256
MaeII	ACGT	1 cut(s)	1481
MaeIII	GTNAC	3 cut(s)	90, 206, 690
MalI	GATC	4 cut(s)	572, 777, 1043, 1449
MboI	GATC	4 cut(s)	570, 775, 1041, 1447
MboII	GAAGA	7 cut(s)	20, 65, 68, 95, 114, 136, 353
MfeI	CAATTG	1 cut(s)	597
MhlI	GDGCHC	1 cut(s)	1203
MluCI	AATT	5 cut(s)	66, 86, 471, 597, 638
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	28, 1267
MseI	TTAA	4 cut(s)	15, 860, 915, 1437
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	2 cut(s)	657, 701
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	4 cut(s)	146, 227, 1072, 1220
NciI	CCSGG	1 cut(s)	657
NdeI	CATATG	2 cut(s)	580, 1246
NdeII	GATC	4 cut(s)	570, 775, 1041, 1447
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	6 cut(s)	292, 349, 375, 399, 747, 874
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	2 cut(s)	90, 206
NsbI	TGCGCA	1 cut(s)	222
NspI	RCATGY	2 cut(s)	349, 399
PaeR7I	CTCGAG	1 cut(s)	827
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	603, 1279, 1466
PkrI	GCNGC	5 cut(s)	225, 232, 961, 964, 1012
PleI	GAGTC	1 cut(s)	30
PmaCI	CACGTG	1 cut(s)	1482
PmlI	CACGTG	1 cut(s)	1482
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	1482
Psp6I	CCWGG	1 cut(s)	699
PspCI	CACGTG	1 cut(s)	1482
PspEI	GGTNACC	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	3 cut(s)	143, 853, 1360
PstI	CTGCAG	1 cut(s)	964
RsaI	GTAC	6 cut(s)	255, 341, 381, 545, 839, 972
RsaNI	GTAC	6 cut(s)	254, 340, 380, 544, 838, 971
SaqAI	TTAA	4 cut(s)	15, 860, 915, 1437
SatI	GCNGC	5 cut(s)	224, 231, 960, 963, 1011
Sau3AI	GATC	4 cut(s)	570, 775, 1041, 1447
Sau96I	GGNCC	3 cut(s)	143, 853, 1360
ScaI	AGTACT	1 cut(s)	381
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	657, 701
SduI	GDGCHC	1 cut(s)	1203
SfaNI	GCATC	3 cut(s)	285, 722, 886
SfcI	CTRYAG	2 cut(s)	960, 1128
Sfr274I	CTCGAG	1 cut(s)	827
SinI	GGWCC	2 cut(s)	853, 1360
SlaI	CTCGAG	1 cut(s)	827
SmlI	CTYRAG	3 cut(s)	791, 827, 1087
SmoI	CTYRAG	3 cut(s)	791, 827, 1087
Sse9I	AATT	5 cut(s)	66, 86, 471, 597, 638
SsiI	CCGC	2 cut(s)	230, 1010
SspMI	CTAG	3 cut(s)	63, 227, 1256
StyD4I	CCNGG	2 cut(s)	655, 699
TaaI	ACNGT	5 cut(s)	253, 339, 384, 1179, 1433
TaiI	ACGT	1 cut(s)	1484
TaqI	TCGA	9 cut(s)	828, 894, 980, 1022, 1040, 1323, 1450, 1469, 1476
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	5 cut(s)	66, 86, 471, 597, 638
TatI	WGTACW	3 cut(s)	339, 379, 543
TauI	GCSGC	2 cut(s)	233, 1013
TfiI	GAWTC	3 cut(s)	603, 1279, 1466
Tru1I	TTAA	4 cut(s)	15, 860, 915, 1437
Tru9I	TTAA	4 cut(s)	15, 860, 915, 1437
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	2 cut(s)	90, 206
TseI	GCWGC	3 cut(s)	223, 959, 962
Tsp45I	GTSAC	2 cut(s)	90, 206
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	853, 1360
XceI	RCATGY	2 cut(s)	349, 399
XhoI	CTCGAG	1 cut(s)	827
XspI	CTAG	3 cut(s)	63, 227, 1256
ZrmI	AGTACT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.